Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  308  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93455572--93455741
92
1.8
93
93
1
297
28
28
21
21
1.98
93463116--93463285
93
1.8
93
89
0
268
29
27
20
23
1.99
93463110--93463282
46
3.7
46
75
13
174
30
26
20
23
1.99
93463160--93463301
46
3.1
45
70
18
114
29
27
19
23
1.98
93474023--93474076
28
2.0
28
85
10
76
64
0
29
5
1.16
93474054--93474087
13
2.5
14
90
9
61
73
0
20
5
1.04
93474027--93474087
28
2.2
28
82
8
72
68
0
26
4
1.09
93474518--93474566
22
2.2
22
100
0
98
14
30
30
24
1.94
93476533--93476574
21
2.0
21
100
0
84
14
23
9
52
1.71
93487677--93487749
15
4.9
15
84
3
76
10
15
17
56
1.67
93488335--93488402
33
2.1
33
97
0
127
19
20
20
39
1.92
93489818--93489842
3
8.3
3
100
0
50
32
0
0
68
0.90
93493986--93494015
14
2.1
14
100
0
60
30
0
0
70
0.88
93501644--93501688
19
2.4
19
85
14
58
35
0
4
60
1.17
93501646--93501689
20
2.3
19
80
11
54
31
0
4
63
1.14
93501624--93501701
29
2.5
31
80
12
81
32
0
5
62
1.17
93504892--93504937
2
23.5
2
95
4
85
50
0
0
50
1.00
93506888--93506923
16
2.2
16
90
0
54
75
2
11
11
1.16
93510614--93510714
29
3.6
29
74
6
91
68
0
1
28
1.07
93510616--93510812
9
21.0
9
63
21
50
62
2
5
29
1.30
93510741--93510807
20
3.4
19
76
19
59
61
2
7
28
1.38
93510735--93510810
21
3.7
21
76
18
63
60
2
6
30
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93510757--93510810
20
2.6
22
80
16
71
62
1
5
29
1.28
93510995--93511056
29
2.2
29
85
8
83
33
4
1
59
1.28
93511229--93511388
84
1.9
84
84
5
216
31
11
16
40
1.84
93512825--93513042
49
4.6
47
76
9
176
27
27
18
27
1.98
93512824--93513042
98
2.3
92
80
9
237
26
26
18
27
1.98
93516326--93516378
24
2.2
25
83
16
67
52
0
0
47
1.00
93516315--93516365
22
2.3
23
78
18
63
47
0
1
50
1.12
93516326--93516378
25
2.2
24
86
10
72
52
0
0
47
1.00
93521995--93522028
12
2.8
12
86
0
50
50
17
23
8
1.74
93529706--93529994
143
2.0
143
90
0
452
33
21
21
24
1.97
93529716--93530036
143
2.2
143
84
1
428
33
20
19
25
1.97
93531890--93531948
3
19.7
3
100
0
118
33
0
0
66
0.92
93533750--93533802
25
2.1
25
96
0
97
28
3
5
62
1.35
93534114--93534336
41
5.4
41
88
0
302
32
23
22
21
1.98
93535466--93535514
23
2.1
24
84
3
64
73
0
6
20
1.04
93535854--93535900
3
15.7
3
90
0
76
65
0
34
0
0.93
93540391--93540493
42
2.4
43
76
7
102
21
15
33
30
1.94
93540432--93540565
69
2.0
68
96
1
250
21
14
29
34
1.93
93542503--93542538
18
2.0
18
100
0
72
33
5
16
44
1.71
93543498--93543577
30
2.7
29
88
3
106
21
1
36
41
1.61
93548163--93548221
28
2.1
28
81
6
66
57
10
10
22
1.61
93551002--93551045
21
2.1
21
83
8
54
31
2
40
25
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93561363--93561446
41
2.0
42
90
2
134
28
19
29
22
1.98
93575062--93575105
22
2.0
22
90
0
70
22
27
18
31
1.97
93577450--93577509
30
2.0
30
100
0
120
20
30
6
43
1.77
93585387--93585414
11
2.5
11
100
0
56
7
14
0
78
0.95
93586436--93586477
3
14.3
3
95
5
77
69
0
0
30
0.89
93586519--93586571
21
2.4
23
81
15
67
79
0
11
9
0.94
93586652--93586703
22
2.5
20
85
11
77
76
0
0
23
0.78
93586656--93586698
15
2.9
14
83
13
50
76
0
0
23
0.78
93591055--93591115
30
2.0
30
83
0
77
14
22
36
26
1.93
93599363--93599415
27
2.0
25
85
7
70
20
15
9
54
1.68
93602674--93602782
28
3.9
28
75
2
103
27
24
13
33
1.93
93602656--93602786
56
2.4
56
79
5
142
25
25
13
34
1.93
93609416--93609448
5
6.8
5
96
3
59
0
15
0
84
0.61
93613970--93614387
81
5.2
81
92
0
683
22
20
20
35
1.96
93614429--93614678
84
3.0
82
80
9
254
19
22
16
42
1.89
93617950--93617993
14
3.0
14
86
6
52
72
2
0
25
0.96
93619478--93619515
18
2.1
18
95
0
67
28
0
7
63
1.23
93620906--93620964
31
1.9
31
82
0
73
33
8
11
45
1.71
93622339--93622404
17
3.3
20
70
21
66
66
1
0
31
1.01
93622339--93622420
39
2.3
36
82
17
100
67
1
0
31
0.99
93624902--93624944
20
2.2
20
100
0
86
32
20
0
46
1.51
93633294--93633322
2
14.5
2
100
0
58
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93636294--93636325
2
16.0
2
93
0
55
46
0
0
53
1.00
93637714--93637802
44
2.0
44
95
0
160
40
15
13
30
1.86
93642315--93642451
48
2.9
48
87
2
188
37
17
19
24
1.93
93645255--93645287
16
2.0
17
88
5
50
69
0
3
27
1.03
93645970--93646007
20
1.9
20
88
0
58
50
2
5
42
1.39
93646091--93646137
24
1.9
25
82
4
60
48
6
2
42
1.40
93647056--93647091
3
12.3
3
94
5
65
30
0
0
69
0.89
93647838--93647904
26
2.6
23
76
21
62
43
1
1
53
1.19
93647859--93647912
26
2.1
25
86
13
74
44
0
0
55
0.99
93647859--93647921
31
2.2
26
86
13
81
44
0
0
55
0.99
93647912--93647953
13
2.9
14
80
13
50
54
0
0
45
0.99
93647916--93647952
16
2.3
16
86
13
58
59
0
0
40
0.97
93647985--93648035
19
3.2
15
73
21
50
54
0
1
43
1.11
93663396--93663459
29
2.1
31
83
11
80
35
0
3
60
1.12
93663437--93663461
8
3.1
8
100
0
50
24
0
0
76
0.80
93666389--93666445
26
2.2
26
84
6
71
42
17
8
31
1.80
93667784--93667817
3
11.3
3
100
0
68
35
0
0
64
0.94
93670910--93670957
19
2.5
19
86
0
60
56
2
6
35
1.36
93670924--93671015
29
3.2
30
82
11
104
60
1
6
31
1.29
93671457--93671631
89
2.0
88
84
4
226
37
10
15
36
1.82
93671872--93671910
20
2.0
20
85
10
53
35
5
23
35
1.77
93677681--93677767
35
2.5
35
82
0
102
20
12
26
40
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93680681--93680807
50
2.7
46
85
7
148
28
17
30
23
1.97
93680777--93680905
48
2.6
48
82
4
152
29
19
25
25
1.98
93684650--93684683
16
2.1
16
100
0
68
32
35
5
26
1.81
93691679--93691729
25
2.0
26
88
3
77
49
3
3
43
1.39
93711505--93711592
23
3.9
22
76
16
74
36
18
21
23
1.95
93714896--93715062
35
4.6
35
85
7
201
33
24
10
31
1.90
93714891--93715062
75
2.4
73
84
8
226
33
23
11
31
1.90
93722388--93722554
35
4.6
35
85
7
201
33
24
10
31
1.90
93722383--93722554
75
2.4
73
84
8
226
33
23
11
31
1.90
93724408--93724473
10
6.5
10
72
16
55
57
15
19
7
1.61
93724408--93724458
20
2.5
20
100
0
102
54
15
19
9
1.68
93725665--93725733
30
2.3
30
85
5
86
42
23
10
24
1.85
93736393--93736441
21
2.3
21
79
6
64
20
38
18
22
1.93
93738851--93738897
23
2.0
23
100
0
94
36
8
17
38
1.80
93756163--93756221
3
19.7
3
100
0
118
67
0
0
32
0.91
93756932--93756971
20
2.0
21
85
5
55
45
5
7
42
1.54
93765917--93765963
22
2.1
22
100
0
94
31
12
8
46
1.72
93774791--93774835
23
2.0
23
86
8
65
11
13
2
73
1.19
93783829--93783883
27
2.1
27
86
3
76
67
5
1
25
1.22
93784798--93784863
30
2.2
30
83
5
80
57
1
1
39
1.17
93786224--93786254
2
15.5
2
100
0
62
48
0
0
51
1.00
93788395--93788442
25
1.9
25
95
0
87
18
18
18
43
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93790630--93790690
32
1.9
32
100
0
122
39
3
32
24
1.72
93791115--93791159
22
2.0
22
91
0
72
48
15
2
33
1.57
93795703--93795747
22
2.0
22
91
0
72
48
15
2
33
1.57
93798548--93798587
2
20.0
2
100
0
80
50
0
0
50
1.00
93798672--93798752
42
2.0
41
87
7
119
66
2
1
29
1.12
93799332--93799375
12
3.6
12
79
14
54
56
0
2
40
1.11
93804999--93805036
15
2.5
15
87
8
51
18
2
0
78
0.86
93805010--93805036
5
5.4
5
100
0
54
18
0
0
81
0.69
93809170--93809207
18
2.2
18
90
9
62
71
2
5
21
1.19
93811568--93811698
64
2.0
65
89
1
201
31
12
12
43
1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378