Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  164  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47904297--47904433
43
3.2
43
76
13
122
26
16
24
33
1.95
47912606--47912709
43
2.4
43
82
6
122
27
15
22
34
1.94
47916425--47916458
13
2.5
13
90
9
50
35
2
14
47
1.60
47917763--47918013
40
6.3
40
91
0
371
23
20
26
29
1.99
47923597--47923829
48
4.8
48
83
2
306
27
18
29
24
1.98
47923597--47923829
96
2.4
97
93
1
387
27
18
29
24
1.98
47925416--47925504
27
3.3
27
87
0
115
31
15
14
38
1.88
47925485--47925794
27
11.6
25
80
11
266
30
10
20
38
1.86
47925485--47925795
53
5.8
54
83
3
380
30
10
19
38
1.86
47925495--47925795
80
3.8
81
82
1
374
31
10
19
38
1.87
47935744--47935835
28
3.3
28
81
6
114
28
34
14
22
1.93
47939668--47939730
19
3.2
20
84
13
85
42
7
4
44
1.54
47940030--47940070
22
1.9
22
95
5
75
43
7
2
46
1.44
47941981--47942031
10
4.9
11
83
11
56
54
1
5
37
1.36
47941958--47942031
31
2.4
30
82
10
80
55
1
6
36
1.35
47942694--47942950
40
6.4
40
87
2
318
36
23
16
23
1.94
47942937--47942974
19
2.0
19
94
0
67
44
23
10
21
1.83
47942956--47943122
40
4.1
41
87
6
234
31
23
17
26
1.97
47942855--47943050
100
2.0
101
84
3
261
36
23
13
25
1.92
47942775--47943122
181
1.9
180
85
2
475
33
23
16
26
1.95
47943426--47943492
21
3.2
21
73
0
62
52
23
0
23
1.48
47943411--47943477
28
2.4
28
85
7
82
50
23
0
25
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47943650--47943736
43
2.1
41
85
10
117
25
5
25
43
1.76
47943660--47943745
43
2.0
42
86
4
120
24
8
27
39
1.83
47944816--47944916
40
2.5
41
82
4
125
34
12
21
30
1.91
47947080--47947404
161
2.0
161
100
0
650
39
9
21
29
1.85
47948862--47948926
16
4.4
16
75
16
68
15
10
13
60
1.60
47948866--47948930
28
2.3
28
91
0
103
15
13
12
58
1.64
47949146--47949237
9
10.0
9
70
15
55
43
15
2
39
1.59
47954318--47954346
13
2.1
14
93
6
51
37
0
6
55
1.27
47955365--47955739
191
2.0
191
100
0
750
30
16
15
37
1.90
47961145--47961227
27
3.1
27
87
0
121
18
21
22
37
1.94
47970326--47970397
12
6.2
12
75
24
75
16
1
0
81
0.75
47970328--47970398
22
3.2
21
81
16
81
18
1
0
80
0.79
47970334--47970398
16
4.2
16
78
21
77
18
1
0
80
0.80
47970322--47970393
35
2.0
36
87
12
105
15
2
0
81
0.79
47970501--47970602
41
2.5
41
87
7
138
30
33
11
24
1.91
47971385--47971595
117
1.8
116
94
1
377
22
17
31
28
1.96
47974889--47974930
22
1.9
21
85
9
57
4
28
7
59
1.44
47976100--47976209
27
4.1
27
88
1
141
16
22
22
38
1.93
47990171--47990204
16
2.0
18
88
11
54
44
2
0
52
1.16
47994577--47994633
21
2.7
21
83
0
69
24
14
26
35
1.93
47995297--47995350
27
2.1
27
86
6
76
59
14
11
14
1.62
48005214--48005298
43
2.0
44
97
2
163
58
9
5
25
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48013875--48013973
29
3.4
29
87
5
148
33
9
31
26
1.87
48013965--48014077
33
3.4
34
75
6
115
37
9
24
28
1.87
48013964--48014077
32
3.5
33
72
9
115
36
9
24
28
1.87
48014085--48014198
33
3.5
32
82
5
120
29
16
23
29
1.96
48014014--48014198
98
1.9
98
81
6
223
32
14
23
29
1.94
48014138--48014205
33
2.1
33
85
0
91
33
19
22
25
1.97
48015866--48016083
40
5.5
40
89
2
307
25
28
22
23
1.99
48035213--48035260
10
4.5
10
81
7
51
50
0
10
39
1.37
48038291--48038388
25
3.9
25
85
5
110
33
16
11
38
1.84
48040834--48040923
27
3.3
27
77
14
96
31
17
26
24
1.97
48040992--48041048
27
2.1
27
83
6
71
42
7
26
24
1.80
48056547--48056593
8
6.0
8
90
5
78
12
2
0
85
0.70
48056547--48056598
15
3.4
15
86
5
77
13
3
0
82
0.80
48057726--48057812
45
1.9
45
82
13
108
20
0
35
43
1.52
48057768--48057821
27
2.0
28
92
3
92
24
0
35
40
1.55
48058291--48058672
126
3.0
126
91
1
615
35
19
19
26
1.95
48060606--48060842
50
4.7
50
83
5
282
29
27
18
24
1.98
48060609--48060842
101
2.3
99
85
4
292
29
26
18
24
1.98
48065669--48065742
34
2.2
34
92
0
121
35
28
10
25
1.90
48065797--48065861
27
2.4
27
92
0
103
21
26
13
38
1.91
48065959--48066067
31
3.5
31
91
2
157
26
26
17
29
1.97
48066060--48066171
33
3.4
33
82
4
129
26
22
12
38
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48067855--48067917
31
2.0
31
84
0
81
58
3
0
38
1.14
48068066--48068102
18
2.1
18
94
0
65
27
18
8
45
1.77
48071889--48071914
9
2.9
9
100
0
52
0
42
0
57
0.98
48081240--48081304
9
7.4
9
79
6
80
40
21
10
27
1.87
48081240--48081309
26
2.7
26
84
8
97
40
21
11
27
1.87
48081240--48081301
17
3.6
17
88
2
88
40
22
11
25
1.87
48081303--48081443
37
4.0
37
82
14
199
47
12
5
34
1.65
48081352--48081411
29
2.1
29
96
0
111
51
8
6
33
1.58
48081315--48081446
66
2.0
65
95
1
237
49
11
6
33
1.63
48085509--48085553
20
2.3
20
92
3
74
24
15
8
51
1.72
48087087--48087146
17
3.4
18
75
6
52
31
16
6
45
1.74
48088349--48088381
6
5.7
6
92
7
59
51
0
0
48
1.00
48090405--48090505
40
2.6
40
85
3
134
48
9
4
36
1.58
48095068--48095369
35
8.6
35
86
0
388
31
11
24
31
1.91
48096972--48097069
49
2.0
49
95
0
178
31
27
15
25
1.95
48107447--48107484
20
1.9
20
89
10
60
55
2
0
42
1.14
48107479--48107518
20
2.0
21
85
9
57
57
10
0
32
1.32
48111729--48111813
9
9.4
9
82
5
91
42
18
9
29
1.82
48111831--48111871
6
6.5
6
89
10
64
17
0
2
80
0.82
48111830--48111868
20
2.0
20
94
0
69
17
0
2
79
0.84
48111896--48111920
13
1.9
13
100
0
50
12
0
48
40
1.40
48111897--48111934
18
2.1
18
95
0
67
7
2
47
42
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48124706--48124743
18
2.1
18
85
9
51
36
0
0
63
0.95
48124705--48124753
16
3.1
17
77
11
50
42
0
0
57
0.99
48126222--48126356
39
3.4
38
76
10
112
28
26
20
23
1.99
48127919--48127954
5
7.0
5
93
6
63
61
0
0
38
0.96
48133395--48133599
102
2.0
102
92
1
340
29
12
23
34
1.91
48135903--48135930
14
2.0
14
100
0
56
28
7
28
35
1.84
48140750--48140887
72
2.0
72
87
5
203
42
3
3
50
1.37
48141626--48141831
75
2.7
75
90
0
322
19
18
16
45
1.85
48141647--48142410
36
20.6
36
69
14
168
22
18
14
44
1.86
48141634--48141859
75
3.0
75
86
2
303
20
18
15
45
1.85
48141902--48142426
147
3.6
147
82
4
403
22
19
13
44
1.85
48141906--48142426
75
7.0
75
76
5
407
22
19
13
44
1.86
48142060--48142426
147
2.5
146
87
3
522
21
19
14
44
1.86
48142471--48142633
36
4.4
36
77
6
157
22
20
14
42
1.88
48142464--48142605
75
1.9
75
89
0
221
21
20
14
42
1.88
48142891--48143092
85
2.4
85
81
6
241
31
17
11
38
1.86
48143154--48143368
10
22.0
9
66
22
62
64
1
4
29
1.22
48143199--48143295
22
4.5
22
73
19
78
65
0
3
30
1.07
48143153--48143368
19
10.9
19
72
15
95
64
1
4
29
1.22
48143209--48143295
22
4.0
22
80
15
85
67
0
3
28
1.06
48143274--48143304
9
3.3
9
95
4
53
58
0
0
41
0.98
48143527--48143564
19
2.0
19
100
0
76
31
5
15
47
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48144773--48144800
2
14.0
2
100
0
56
50
0
0
50
1.00
48149079--48149115
2
18.5
2
100
0
74
51
0
0
48
1.00
48151800--48151833
17
1.9
17
88
5
50
35
0
0
64
0.94
48152075--48152180
15
6.7
15
71
19
56
32
5
1
60
1.31
48152094--48152148
17
3.3
17
79
2
67
30
7
1
60
1.35
48152135--48152178
18
2.5
18
77
3
54
38
2
0
59
1.10
48162989--48163640
87
7.5
87
89
4
924
27
14
25
32
1.95
48163073--48163726
44
15.0
44
66
19
293
27
14
25
31
1.95
48165338--48165371
17
1.9
17
88
5
50
35
0
0
64
0.94
48165605--48165649
23
2.0
23
100
0
90
26
2
4
66
1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378