Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  366  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109667528--109667574
15
3.1
15
76
14
51
29
6
19
44
1.75
109667960--109668070
55
2.0
55
100
0
222
25
33
10
30
1.90
109689021--109689059
19
2.1
19
100
0
78
48
15
10
25
1.76
109693250--109693579
131
2.6
129
87
3
468
28
18
19
33
1.95
109695929--109695959
16
2.0
15
93
6
53
25
12
3
58
1.50
109696776--109696826
7
6.9
7
75
20
50
43
0
0
56
0.99
109697620--109697652
15
2.2
15
89
10
50
75
0
6
18
1.00
109702077--109702107
9
3.3
9
91
8
53
77
0
3
19
0.90
109708187--109708243
24
2.3
25
79
11
73
10
15
22
50
1.74
109710687--109710722
14
2.5
14
90
4
54
30
2
0
66
1.06
109710742--109710789
17
2.5
20
83
12
66
29
0
2
68
1.01
109710693--109710797
18
5.5
18
73
16
86
33
0
1
63
1.11
109710744--109710797
27
2.0
28
82
10
69
29
0
1
68
1.00
109722807--109722843
18
2.1
18
94
0
65
37
18
8
35
1.81
109732904--109732935
1
32.0
1
100
0
64
0
0
0
100
0.00
109736700--109736759
31
1.9
31
93
0
102
28
5
10
56
1.53
109738398--109738447
25
2.0
25
96
0
91
28
6
24
42
1.78
109738971--109739188
121
1.8
121
84
4
305
37
16
17
28
1.92
109740017--109740049
14
2.4
14
90
10
50
72
9
9
9
1.28
109740506--109740551
24
1.9
24
95
0
83
19
4
52
23
1.64
109742215--109742604
177
2.2
176
92
0
654
19
23
18
38
1.93
109742215--109742654
177
2.5
175
86
4
639
20
23
17
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109748067--109748205
69
2.0
69
98
0
269
42
3
5
48
1.44
109752635--109752691
19
3.1
19
87
7
73
36
0
5
57
1.21
109753047--109753105
31
1.9
31
86
6
84
37
6
13
42
1.71
109764581--109764644
29
2.2
29
91
2
103
35
26
15
21
1.94
109778353--109778476
66
1.9
66
84
3
169
41
14
16
27
1.87
109781187--109781239
26
2.0
26
100
0
106
33
7
22
35
1.83
109781401--109781432
15
2.1
15
100
0
64
18
21
6
53
1.67
109785001--109785032
16
2.0
16
100
0
64
25
6
31
37
1.81
109787520--109787603
20
4.2
20
72
14
75
57
4
3
34
1.37
109787527--109787603
39
2.0
38
84
2
100
55
3
2
37
1.32
109787474--109787602
10
13.3
9
67
24
59
54
4
2
38
1.34
109788166--109788199
16
2.1
16
94
0
59
35
0
2
61
1.11
109790267--109790340
37
2.0
36
86
2
103
54
1
4
40
1.28
109790267--109790353
37
2.5
36
83
9
101
52
1
3
42
1.25
109790320--109790381
17
3.5
18
76
8
56
53
0
1
45
1.10
109799323--109799357
12
2.8
12
86
4
52
0
0
14
85
0.59
109799325--109799357
8
4.2
8
88
3
50
0
0
12
87
0.53
109805312--109805579
133
2.0
133
94
0
473
40
22
13
24
1.89
109810967--109811022
29
1.9
29
85
0
76
28
0
41
30
1.57
109811310--109811353
3
14.7
3
80
0
52
29
6
0
63
1.20
109811461--109811522
18
3.4
19
76
19
69
33
3
3
59
1.29
109811465--109811523
16
3.7
16
76
14
59
35
3
3
57
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109812236--109812317
30
2.7
30
92
0
128
17
48
8
25
1.75
109812633--109812665
16
2.1
16
94
0
57
51
3
6
39
1.42
109812742--109812787
21
2.2
21
84
3
58
76
0
4
19
0.96
109812740--109812787
15
3.3
15
82
5
53
75
0
4
20
0.97
109813205--109813286
30
2.7
30
96
0
146
24
7
51
17
1.70
109813233--109813285
18
3.3
18
65
29
55
24
7
52
15
1.68
109820324--109820564
120
2.0
119
93
2
412
30
14
12
41
1.84
109829860--109829905
18
2.8
16
81
15
58
56
4
6
32
1.45
109829860--109829905
17
2.9
15
81
15
56
56
4
6
32
1.45
109831091--109831116
11
2.4
11
100
0
52
30
0
15
53
1.42
109832257--109832285
15
2.0
15
93
6
51
31
6
6
55
1.53
109832346--109832376
13
2.4
13
94
0
53
74
0
0
25
0.82
109832653--109832707
23
2.5
21
85
5
74
47
3
1
47
1.30
109833941--109833987
22
2.1
22
96
0
85
38
0
19
42
1.51
109834688--109834736
17
2.8
18
78
12
57
77
0
0
22
0.77
109834701--109834756
9
5.7
10
78
17
55
73
3
0
23
0.99
109834697--109834756
11
6.4
9
81
12
52
75
3
0
21
0.95
109834846--109834924
31
2.5
31
85
4
97
32
10
13
43
1.78
109835386--109835610
108
2.1
108
92
1
371
27
33
12
26
1.92
109835575--109835640
30
2.2
30
89
5
98
18
42
10
28
1.83
109837275--109837336
30
2.1
30
90
0
97
59
9
1
29
1.38
109845202--109845263
31
2.0
31
100
0
124
6
32
19
41
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109847341--109847431
27
3.1
27
65
17
74
38
25
1
35
1.63
109854154--109854201
23
2.1
23
88
7
71
39
0
0
60
0.97
109855249--109855358
26
4.2
26
95
0
175
34
5
23
36
1.78
109856978--109857064
27
3.3
27
84
7
106
18
21
21
37
1.94
109860146--109860273
60
2.1
61
85
4
170
42
3
12
40
1.61
109861074--109861118
22
2.0
22
91
8
74
31
8
22
37
1.85
109864154--109864263
41
2.6
42
81
4
132
34
23
11
30
1.91
109864243--109864638
51
8.5
47
68
17
177
28
23
17
29
1.97
109864226--109864638
137
3.0
137
90
0
628
28
23
17
30
1.97
109864340--109864539
41
4.5
41
68
18
123
28
22
19
30
1.98
109864665--109864891
44
5.1
44
70
15
189
25
23
21
29
1.99
109864694--109864906
44
4.8
45
77
5
209
26
23
20
29
1.99
109864665--109864906
89
2.7
89
92
2
407
26
22
21
29
1.99
109864236--109864768
274
2.0
272
79
7
573
28
24
18
29
1.98
109866610--109866652
20
2.2
20
83
8
52
62
18
0
18
1.32
109867914--109867976
24
2.6
24
83
11
76
38
4
4
52
1.44
109867973--109868010
14
2.7
14
76
15
51
34
5
0
60
1.19
109867974--109868045
37
1.9
38
88
2
110
36
4
1
58
1.26
109867993--109868137
55
2.8
54
81
11
146
33
6
4
56
1.43
109867993--109868192
25
8.1
25
74
14
168
33
7
4
55
1.47
109867989--109868137
27
5.9
25
77
9
124
33
6
4
56
1.43
109868237--109868287
19
2.7
18
77
14
50
35
1
5
56
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109868233--109868292
20
2.9
22
76
14
65
35
1
6
56
1.35
109870946--109871044
31
3.2
30
67
13
85
42
4
13
40
1.62
109870933--109871110
61
2.9
61
82
4
180
42
3
14
39
1.64
109873254--109873411
79
2.0
79
89
0
244
32
29
21
15
1.95
109880248--109880291
14
3.4
14
76
23
60
27
0
31
40
1.56
109886339--109886436
49
2.0
49
92
4
162
31
11
21
35
1.89
109899520--109899546
6
4.5
6
100
0
54
0
0
29
70
0.88
109900186--109900261
30
2.5
31
77
12
77
42
5
9
43
1.59
109902450--109902526
31
2.5
30
81
6
91
37
7
15
38
1.77
109910301--109910471
85
2.0
85
94
0
297
29
17
11
42
1.84
109912143--109912184
22
1.9
23
90
9
70
50
0
2
47
1.14
109913752--109914044
43
6.9
43
92
1
466
23
19
30
25
1.98
109913752--109914044
85
3.4
85
92
1
464
23
19
30
25
1.98
109913753--109914063
42
7.3
42
85
7
369
24
20
29
25
1.99
109914113--109914193
31
2.5
31
80
4
81
61
18
3
16
1.48
109914439--109914484
21
2.2
21
84
0
56
2
50
19
28
1.60
109920116--109920341
9
24.6
9
75
9
143
38
1
13
46
1.51
109920116--109920341
18
12.3
18
76
9
161
38
1
13
46
1.51
109920169--109920341
27
6.2
27
77
10
159
38
1
13
45
1.54
109920092--109920313
114
1.9
114
85
3
304
38
1
13
46
1.51
109920456--109922174
372
4.6
372
99
0
3368
39
10
14
36
1.79
109924366--109924406
10
4.1
10
100
0
82
39
31
0
29
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109925606--109925633
2
14.0
2
100
0
56
50
0
0
50
1.00
109926161--109926417
41
6.3
41
88
1
356
18
22
24
34
1.96
109926453--109926479
13
2.1
13
100
0
54
48
29
14
7
1.71
109931219--109931266
24
2.0
23
84
11
62
37
4
4
54
1.39
109933523--109933591
29
2.3
30
73
9
70
37
14
8
39
1.77
109937347--109937439
37
2.5
37
77
8
100
36
4
6
52
1.47
109937527--109937559
2
16.5
2
93
0
57
45
0
3
51
1.16
109938217--109938447
109
2.1
109
95
0
419
31
25
12
30
1.93
109950810--109950856
20
2.3
20
96
0
85
12
4
19
63
1.44
109952819--109952852
17
1.9
18
88
5
52
44
23
20
11
1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378