genome.fa.s1.2.7.7.80.10.50.1000.354.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  354  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106219654--106219680	14	1.9	14	100	0	54	29	0	0	70	0.88
106220555--106220600	22	2.1	23	88	8	69	30	0	8	60	1.26
106223601--106224126	46	11.6	46	76	11	352	41	13	22	22	1.88
106223753--106224093	49	7.7	46	72	14	182	41	14	23	20	1.89
106223610--106223908	93	3.2	93	81	8	344	42	12	22	23	1.87
106223748--106224160	219	1.9	218	96	2	776	41	14	22	21	1.89
106224065--106224203	43	3.1	44	88	3	181	43	15	20	20	1.88
106223702--106224227	263	2.0	261	84	6	697	40	14	23	22	1.90
106228445--106228478	18	1.9	17	88	5	50	61	0	2	35	1.11
106228493--106228575	18	4.5	19	78	15	86	61	3	4	30	1.34
106228487--106228575	27	3.2	28	73	19	78	60	4	5	29	1.39
106228500--106228572	9	8.0	9	71	18	53	63	4	2	30	1.27
106228497--106228575	19	4.3	18	79	12	81	62	3	5	29	1.34
106228628--106228678	19	2.7	20	78	9	61	68	3	1	25	1.17
106237431--106237602	91	1.9	91	86	4	249	30	6	5	56	1.50
106245175--106245238	28	2.3	28	100	0	128	20	23	31	25	1.98
106245303--106245373	27	2.6	27	75	4	72	36	26	7	29	1.83
106245357--106245480	27	4.6	27	85	2	160	42	18	7	31	1.77
106245341--106245452	54	2.1	53	80	8	127	40	21	6	32	1.78
106245357--106245480	54	2.3	54	90	0	185	42	18	7	31	1.77
106245463--106245524	27	2.3	27	91	0	97	40	16	16	27	1.89
106245357--106245506	54	2.8	54	84	4	151	42	18	9	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106245357--106245509	81	1.9	81	83	5	202	41	18	9	31	1.82
106246132--106246187	25	2.1	27	90	9	89	41	23	17	17	1.90
106246169--106246217	21	2.6	18	82	17	71	48	24	8	18	1.75
106246175--106246216	21	2.0	21	100	0	84	47	23	9	19	1.78
106249465--106249535	27	2.6	27	75	4	72	36	26	7	29	1.83
106249519--106249642	27	4.6	27	85	2	169	41	20	7	30	1.79
106249503--106249642	54	2.6	53	85	6	138	40	21	7	30	1.80
106249519--106249671	81	1.9	81	86	5	220	40	19	9	30	1.83
106249625--106249686	27	2.3	27	91	0	97	40	16	16	27	1.89
106249519--106249669	54	2.8	54	85	4	162	41	19	9	29	1.83
106250306--106250390	28	3.0	28	94	0	152	45	24	9	20	1.80
106253599--106253669	27	2.6	27	75	4	72	36	26	7	29	1.83
106253653--106253776	27	4.6	27	85	2	169	41	20	7	30	1.79
106253637--106253776	54	2.6	53	85	6	138	40	21	7	30	1.80
106253653--106253805	81	1.9	81	86	5	220	40	19	9	30	1.83
106253759--106253820	27	2.3	27	91	0	97	40	16	16	27	1.89
106253653--106253803	54	2.8	54	85	4	162	41	19	9	29	1.83
106254441--106254536	28	3.5	28	88	7	144	45	25	8	20	1.79
106257166--106257212	19	2.5	19	89	6	69	27	21	8	42	1.81
106259991--106260020	6	5.0	6	100	0	60	50	16	33	0	1.46
106261212--106261338	66	1.9	66	96	0	236	33	19	11	35	1.88
106261402--106261953	43	12.6	44	75	9	407	35	21	22	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106261396--106261956	87	6.4	86	72	10	286	35	22	22	20	1.96
106261390--106261866	131	3.6	132	86	5	673	35	22	22	19	1.96
106261978--106262168	68	2.8	68	91	1	303	28	23	23	24	1.99
106262283--106263044	44	17.3	44	75	8	568	31	19	23	25	1.98
106262221--106263064	132	6.4	132	97	0	1562	32	19	23	25	1.98
106263409--106263450	22	1.9	22	85	9	59	23	52	9	14	1.71
106263522--106263568	23	2.2	23	88	11	73	10	2	31	55	1.46
106263522--106263589	23	3.2	20	80	15	57	10	1	29	58	1.40
106263926--106264007	3	27.3	3	70	16	55	31	3	1	63	1.19
106273213--106273269	28	2.0	28	96	0	105	28	8	3	59	1.44
106276721--106276887	43	3.9	42	81	3	183	27	15	26	30	1.96
106277833--106277874	20	2.1	20	90	0	66	11	28	23	35	1.91
106280628--106280685	18	3.0	18	72	16	53	32	20	17	29	1.95
106281305--106281373	28	2.5	28	75	0	75	55	7	14	23	1.64
106281350--106281393	22	1.9	24	86	9	65	65	4	13	15	1.41
106292552--106292593	14	2.7	16	75	17	52	47	11	0	40	1.40
106297789--106297900	58	1.9	58	87	0	161	28	22	15	33	1.94
106301222--106301252	2	15.5	2	100	0	62	0	48	0	51	1.00
106305665--106305706	22	2.0	21	86	13	59	28	4	9	57	1.51
106307417--106307451	12	2.8	12	91	4	52	0	20	2	77	0.90
106315014--106315054	14	3.0	14	83	16	59	87	12	0	0	0.53
106315014--106315054	19	2.3	18	91	8	66	87	12	0	0	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106317968--106318062	47	2.0	47	100	0	190	43	8	21	27	1.81
106321558--106321610	25	2.0	25	85	14	70	62	0	3	33	1.13
106321690--106321726	19	2.0	18	89	5	56	72	0	2	24	0.97
106321908--106321994	15	5.0	19	68	21	82	48	11	3	36	1.56
106321890--106321994	34	3.1	34	97	0	192	47	10	3	38	1.56
106324254--106324279	2	13.0	2	100	0	52	50	0	0	50	1.00
106329829--106329887	30	2.0	29	87	9	84	25	3	16	54	1.58
106329935--106329994	30	2.0	30	90	0	93	33	8	0	58	1.28
106330363--106330423	22	2.9	22	79	11	58	29	4	0	65	1.13
106330955--106330985	2	15.5	2	100	0	62	48	0	0	51	1.00
106333989--106334025	14	2.8	13	88	11	58	21	5	10	62	1.48
106348025--106348074	12	4.2	12	71	19	50	26	32	34	8	1.85
106348037--106348095	24	2.5	24	91	0	91	27	30	35	6	1.83
106359126--106359230	43	2.4	43	89	6	151	31	27	17	23	1.97
106359075--106359237	43	3.8	42	77	5	150	31	26	16	25	1.96
106366083--106366137	23	2.4	24	80	17	64	41	29	0	29	1.56
106369334--106369366	2	16.5	2	93	0	57	0	45	0	54	0.99
106372049--106372088	21	2.0	20	90	5	62	35	0	22	42	1.54
106372054--106372096	21	2.1	21	83	12	54	32	2	20	44	1.65
106384275--106384313	6	6.5	6	100	0	78	84	0	0	15	0.62
106389682--106389710	13	2.2	13	100	0	58	55	13	0	31	1.39
106395220--106395255	2	18.0	2	100	0	72	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106395345--106395370	13	2.0	13	100	0	52	38	15	30	15	1.88
106396519--106396552	16	2.1	17	88	5	52	29	23	5	41	1.78
106401486--106401586	28	3.5	29	86	6	125	29	27	13	28	1.95
106405183--106405235	18	2.9	18	91	0	88	32	26	15	26	1.95
106409247--106409516	38	7.1	38	91	0	434	32	25	21	20	1.98
106414046--106414142	34	2.6	39	77	15	132	39	25	6	28	1.80
106417301--106417449	76	1.9	77	87	4	221	37	17	24	20	1.93
106427720--106427850	30	4.5	30	86	8	171	28	25	13	32	1.94
106427719--106427850	58	2.3	58	85	4	176	28	26	13	31	1.94
106435676--106435806	30	4.5	30	86	8	171	28	25	13	32	1.94
106435675--106435806	58	2.3	58	85	4	176	28	26	13	31	1.94
106446389--106446420	2	16.0	2	100	0	64	50	0	0	50	1.00
106449461--106449512	27	2.0	27	84	3	70	34	5	5	53	1.49
106449492--106449535	23	2.0	22	81	4	52	36	4	2	56	1.32
106449514--106449608	25	3.8	26	80	5	106	31	8	2	57	1.40
106454004--106454066	24	2.6	24	100	0	126	20	17	26	34	1.95
106457225--106457306	43	1.9	43	84	0	110	35	20	4	39	1.74
106459939--106460621	132	5.2	131	91	1	1062	26	20	24	27	1.99
106460609--106460940	89	3.8	89	79	7	311	31	18	23	26	1.97
106459936--106461125	45	26.9	44	68	8	351	29	19	23	27	1.98
106460809--106460985	83	2.1	88	82	6	220	32	15	22	29	1.95
106463036--106463087	27	2.0	27	84	3	70	34	5	5	53	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106463067--106463110	23	2.0	22	81	4	52	36	4	2	56	1.32
106463089--106463185	25	3.8	25	71	12	79	28	7	4	59	1.42
106463140--106463189	14	3.6	14	71	17	50	28	6	0	66	1.15
106464107--106464216	26	4.2	26	92	0	175	33	5	23	37	1.78
106467398--106467428	12	2.6	12	100	0	62	9	25	51	12	1.70
106472293--106472402	26	4.2	26	92	0	175	33	5	23	37	1.78
106475052--106475362	129	2.4	130	79	4	357	28	17	16	37	1.91
106475963--106476107	19	7.9	19	87	9	221	38	9	13	37	1.78
106475984--106476039	18	3.5	15	81	18	60	37	10	16	35	1.83
106475963--106476107	54	2.7	54	93	1	245	38	9	13	37	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378