Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  357  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107059497--107059804
155
2.0
152
94
1
494
32
12
20
35
1.90
107063207--107063273
24
2.8
24
83
0
80
41
2
41
13
1.59
107073163--107073192
7
4.3
7
100
0
60
40
0
0
60
0.97
107073504--107073539
19
1.9
19
88
5
56
61
5
0
33
1.19
107075002--107075066
28
2.3
27
79
10
67
29
7
1
61
1.33
107081774--107081913
39
3.6
39
94
0
226
35
24
27
12
1.92
107099298--107099328
8
3.9
8
95
0
53
41
0
0
58
0.98
107110542--107110580
21
1.9
20
84
5
51
69
10
7
12
1.37
107119647--107119822
46
3.8
46
81
10
232
20
21
29
28
1.98
107119643--107119814
93
1.8
93
96
0
317
20
22
30
27
1.98
107121762--107121796
16
2.2
16
90
10
54
25
2
8
62
1.38
107122185--107122215
15
2.1
15
93
0
53
22
12
9
54
1.67
107123455--107123498
6
7.3
6
92
0
61
15
4
2
77
1.04
107128996--107129136
38
3.7
38
80
3
149
31
24
21
21
1.98
107132309--107132364
28
2.0
28
92
0
94
23
12
1
62
1.39
107134797--107134828
6
5.3
6
92
0
55
50
12
18
18
1.78
107137979--107138005
10
2.7
10
100
0
54
44
0
7
48
1.31
107144882--107144982
49
2.1
49
92
0
166
26
24
4
43
1.74
107145580--107145639
30
2.0
30
96
0
111
28
30
5
36
1.78
107145671--107145724
23
2.2
24
84
12
67
50
22
9
18
1.75
107146255--107146296
16
2.8
15
79
10
50
21
21
4
52
1.65
107150208--107150254
13
3.5
13
77
5
58
63
0
2
34
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107151119--107151156
2
19.0
2
100
0
76
50
0
0
50
1.00
107151442--107151489
22
2.1
23
81
11
55
52
2
4
41
1.32
107151736--107151764
12
2.3
13
94
5
51
51
0
6
41
1.28
107154430--107154455
13
2.0
13
100
0
52
30
30
15
23
1.95
107157980--107158020
22
1.9
21
85
5
55
51
7
0
41
1.30
107160966--107161023
25
2.5
22
74
15
62
15
50
13
20
1.78
107161104--107161150
23
2.2
23
81
11
55
14
2
27
55
1.51
107161104--107161196
22
4.1
21
75
10
60
13
1
27
56
1.44
107161127--107161173
21
2.2
22
88
3
69
8
0
25
65
1.20
107161504--107161586
3
27.3
3
73
20
59
30
3
1
65
1.17
107161504--107161586
18
4.4
18
79
13
87
30
3
1
65
1.17
107161503--107161590
27
3.3
26
73
12
81
30
3
1
64
1.17
107161661--107161714
12
4.2
13
76
17
51
33
0
5
61
1.19
107161626--107161803
92
1.9
92
80
16
206
28
10
3
57
1.48
107161837--107161976
39
3.4
40
70
20
101
30
3
6
59
1.40
107161789--107162012
124
1.8
122
82
9
292
30
4
6
58
1.42
107164403--107164449
19
2.5
19
89
6
69
27
21
8
42
1.81
107167226--107167255
6
5.0
6
100
0
60
50
16
33
0
1.46
107167253--107167313
1
61.0
1
80
0
68
90
9
0
0
0.46
107168436--107168562
66
1.9
66
96
0
236
33
19
11
35
1.88
107168626--107169176
43
12.6
44
76
8
414
35
21
22
20
1.96
107168620--107169179
87
6.4
86
72
11
286
35
22
22
20
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107168614--107169089
130
3.6
131
85
5
669
35
22
22
19
1.96
107169200--107169390
68
2.8
68
91
1
303
28
23
23
24
1.99
107169437--107170087
44
15.0
44
73
11
474
31
20
23
24
1.98
107169503--107170088
87
6.8
86
73
11
407
31
19
23
25
1.98
107169442--107170088
131
5.0
132
96
2
1174
31
19
23
25
1.98
107176156--107176743
70
8.2
70
91
5
971
32
15
19
31
1.94
107176350--107176721
77
5.0
77
92
5
594
31
15
19
32
1.93
107176156--107176743
216
2.7
217
96
2
1084
32
15
19
31
1.94
107176793--107176946
54
3.0
52
80
12
185
29
16
18
34
1.94
107177653--107177723
35
2.0
35
97
0
133
15
47
12
23
1.80
107178130--107178197
15
4.6
14
67
25
50
61
19
5
13
1.51
107178124--107178198
32
2.4
31
82
10
98
62
18
6
12
1.50
107178456--107178493
11
3.3
12
89
10
62
0
50
0
50
1.00
107179004--107179139
2
71.0
2
69
16
65
38
4
5
50
1.47
107187471--107187744
46
6.0
46
92
0
424
22
24
15
37
1.92
107187471--107187744
138
2.0
138
95
1
496
22
24
15
37
1.92
107190144--107190211
30
2.3
29
87
5
91
29
17
4
48
1.67
107191543--107191608
31
2.2
32
83
8
84
37
4
10
46
1.59
107192763--107192805
20
2.2
20
83
8
52
18
41
0
39
1.51
107192359--107192874
258
2.0
258
96
0
960
34
25
5
34
1.79
107192930--107192969
20
2.0
20
85
9
55
22
30
0
47
1.52
107193228--107193265
18
2.1
18
85
9
51
36
2
0
60
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107201274--107201300
14
1.9
14
100
0
54
14
0
0
85
0.61
107201397--107201436
9
4.4
9
87
6
55
67
0
0
32
0.91
107201394--107201437
8
5.1
8
86
13
61
61
0
0
38
0.96
107202522--107202589
23
2.9
23
82
8
75
38
0
0
61
0.96
107202527--107202611
23
3.5
26
76
15
74
38
3
0
57
1.16
107202519--107202578
31
1.9
31
83
6
77
38
0
0
61
0.96
107203242--107203289
24
2.0
24
87
4
69
39
0
2
58
1.10
107203481--107203531
15
2.9
16
76
23
50
27
3
1
66
1.20
107204423--107204482
26
2.2
28
80
11
72
68
0
0
31
0.90
107204422--107204481
28
2.1
28
84
6
77
66
0
0
33
0.92
107204428--107204474
16
2.9
16
81
12
51
70
0
0
29
0.88
107204423--107204487
15
4.4
16
70
20
52
67
0
0
32
0.91
107205553--107205875
107
3.0
107
98
0
610
42
9
5
43
1.60
107211270--107211319
24
2.3
22
83
16
68
36
0
10
54
1.34
107211477--107211529
20
2.6
21
82
11
65
50
0
0
49
1.00
107211468--107211527
21
2.8
21
85
12
70
46
0
0
53
1.00
107212160--107212199
17
2.3
18
82
4
55
12
7
5
75
1.18
107212983--107213143
60
2.7
60
93
0
259
40
11
4
42
1.62
107213786--107213836
16
3.1
17
78
18
63
62
0
0
37
0.95
107220656--107220686
2
15.5
2
100
0
62
51
0
0
48
1.00
107224669--107224718
23
2.1
24
82
10
59
64
0
2
34
1.05
107225822--107225864
19
2.3
18
84
4
59
58
4
2
34
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107229344--107229411
22
3.1
22
76
0
73
14
8
13
63
1.52
107229366--107229402
11
3.4
11
88
0
56
18
10
8
62
1.52
107231589--107231631
17
2.5
17
96
0
77
6
32
44
16
1.74
107231728--107231934
63
3.3
62
78
8
213
26
24
26
23
2.00
107234213--107234243
2
15.5
2
100
0
62
51
0
0
48
1.00
107235853--107236237
132
2.9
130
83
8
458
34
17
18
29
1.94
107241261--107241285
13
1.9
13
100
0
50
80
0
0
20
0.72
107242067--107242101
2
17.5
2
100
0
70
51
0
0
48
1.00
107248860--107249023
90
1.8
90
81
7
208
23
26
19
30
1.98
107248949--107249255
133
2.3
132
85
2
407
27
24
19
28
1.99
107260852--107261232
132
2.9
132
82
6
400
35
17
18
28
1.94
107262331--107262365
2
17.5
2
100
0
70
51
0
0
48
1.00
107263910--107263953
22
2.0
22
100
0
88
18
0
31
50
1.47
107269116--107269156
21
2.0
21
90
0
64
29
21
29
19
1.98
107274892--107275615
362
2.0
363
94
0
1270
28
12
16
43
1.84
107277103--107277190
43
2.0
43
97
0
167
27
13
13
45
1.81
107285632--107285660
15
2.0
15
93
6
51
41
6
0
51
1.28
107286935--107286987
24
2.1
26
82
6
65
20
11
1
66
1.33
107291366--107291406
21
2.0
21
85
0
55
43
24
17
14
1.86
107299133--107299493
135
2.7
133
81
5
386
30
20
22
26
1.98
107303352--107303431
41
1.9
42
82
7
101
28
6
15
50
1.68
107306250--107306318
34
2.0
34
94
0
120
30
10
7
52
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107324519--107324614
34
2.9
33
76
3
102
40
15
16
27
1.89
107328479--107328522
22
2.0
20
87
12
61
63
0
0
36
0.95
107333388--107333431
21
2.2
21
88
8
65
13
15
0
70
1.17
107338296--107338344
22
2.4
20
78
15
55
16
40
22
20
1.91
107338434--107338458
11
2.3
11
100
0
50
64
0
36
0
0.94
107338450--107338483
3
11.7
3
93
6
61
64
0
35
0
0.94
107338587--107338642
27
2.1
27
83
6
69
42
0
10
46
1.38
107338994--107339019
13
2.0
13
100
0
52
53
0
0
46
1.00
107339017--107340329
146
9.1
141
88
5
1799
58
7
5
27
1.49
107340263--107340297
12
2.9
12
86
0
52
74
2
0
22
0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378