Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  116  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32412135--32412212
23
3.4
23
71
15
72
28
2
20
48
1.62
32412151--32412188
15
2.6
15
87
4
51
28
0
18
52
1.45
32419918--32419986
31
2.3
31
94
2
122
31
10
15
42
1.81
32423724--32423827
49
2.1
49
94
0
181
34
9
25
29
1.88
32423910--32423982
37
2.0
37
97
0
137
23
20
31
24
1.98
32426493--32426519
14
1.9
14
100
0
54
51
7
18
22
1.70
32432310--32432358
25
2.0
25
95
0
89
44
18
12
24
1.84
32435408--32435571
39
4.2
39
86
3
213
35
20
21
21
1.96
32439941--32439976
16
2.2
16
90
0
54
30
8
19
41
1.81
32444716--32444924
104
2.0
103
91
0
337
46
10
9
33
1.69
32444899--32444980
40
2.0
41
90
2
130
52
13
3
30
1.57
32445002--32445049
19
2.6
19
96
3
89
50
12
0
37
1.41
32445718--32445777
31
1.9
31
86
6
86
55
1
1
41
1.20
32449333--32449393
11
5.7
10
72
12
50
29
19
0
50
1.48
32449332--32449409
32
2.4
32
81
10
79
25
20
1
52
1.54
32450517--32450590
30
2.4
30
84
2
85
29
40
16
13
1.86
32454735--32454795
31
2.0
30
83
3
77
36
0
4
59
1.19
32456931--32457158
46
5.0
46
90
1
323
40
14
23
21
1.90
32458365--32458420
7
7.7
7
77
15
51
42
30
1
25
1.65
32458365--32458424
29
2.1
29
84
6
77
43
30
1
25
1.64
32458488--32458529
22
2.0
21
95
4
75
42
16
0
40
1.48
32458238--32458758
180
2.9
179
86
7
711
43
19
1
35
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32458545--32458595
22
2.3
22
80
6
59
45
29
0
25
1.54
32458664--32458707
22
2.0
22
91
8
72
40
18
0
40
1.50
32458238--32458762
175
3.0
174
87
5
709
43
19
1
35
1.62
32460140--32460181
2
21.5
2
95
4
77
50
0
0
50
1.00
32469889--32469952
18
3.6
18
91
0
101
43
14
20
21
1.87
32472486--32472512
2
13.5
2
100
0
54
48
0
0
51
1.00
32475103--32475223
39
3.1
39
98
0
233
54
4
17
23
1.62
32476049--32476113
3
21.7
3
75
6
60
36
6
0
56
1.24
32476047--32476107
21
2.9
21
82
0
77
37
6
0
55
1.26
32476041--32476113
21
3.6
20
70
19
62
38
5
0
56
1.23
32476097--32476142
21
2.1
22
84
11
60
32
0
8
58
1.28
32476166--32476406
69
3.1
80
70
23
251
29
3
4
62
1.32
32476228--32476906
24
29.8
22
66
24
99
30
3
4
61
1.32
32476237--32476571
14
24.9
13
67
21
69
30
2
4
62
1.29
32476522--32476906
3
129.7
3
70
20
174
31
3
4
61
1.31
32476697--32476742
22
2.1
22
84
15
60
34
0
8
56
1.30
32476924--32476954
12
2.6
12
94
0
53
38
0
6
54
1.26
32490738--32491036
77
4.0
75
83
5
370
29
18
20
32
1.96
32490755--32491048
152
1.9
150
88
2
437
31
18
20
30
1.96
32490755--32491097
77
4.5
76
80
7
313
30
17
20
32
1.95
32490976--32491228
133
1.9
133
85
4
348
31
15
16
35
1.91
32492699--32492765
12
5.0
12
72
21
53
37
7
0
55
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32492754--32492794
21
1.9
22
85
14
59
31
0
9
58
1.31
32492881--32493600
21
33.8
21
66
23
123
31
3
4
60
1.33
32492740--32493571
150
5.3
150
79
16
841
31
3
5
59
1.36
32493181--32493600
3
140.7
3
72
19
221
32
2
4
60
1.30
32493419--32493462
16
2.8
16
86
6
54
38
4
6
50
1.50
32493609--32493661
16
3.5
15
78
14
56
33
1
7
56
1.38
32493360--32493758
203
2.0
201
87
5
581
31
4
4
60
1.33
32495597--32495677
31
2.5
31
82
4
90
60
17
4
17
1.53
32495911--32496007
21
4.6
21
76
10
99
0
46
21
31
1.52
32496420--32496448
14
2.1
14
93
6
51
58
6
0
34
1.25
32499733--32499757
12
2.1
12
100
0
50
32
28
8
32
1.86
32501616--32501940
9
36.7
9
80
4
320
35
2
14
47
1.56
32501616--32501920
53
5.6
53
80
11
289
36
2
13
47
1.56
32501616--32501940
44
7.3
44
89
2
393
35
2
14
47
1.56
32501616--32501938
115
2.8
115
91
1
497
35
2
14
47
1.56
32501616--32501938
71
4.5
71
88
3
366
35
2
14
47
1.56
32502051--32502105
15
3.7
15
79
20
71
54
0
0
45
0.99
32502062--32502135
29
2.6
29
88
0
112
51
2
1
44
1.24
32502308--32502378
24
3.0
24
91
0
115
42
8
21
28
1.82
32502426--32502559
64
2.1
64
98
0
259
46
3
11
38
1.59
32503343--32503368
7
3.7
7
100
0
52
69
15
15
0
1.20
32505227--32505278
19
2.7
19
87
3
68
34
1
38
25
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32506498--32506548
14
3.6
14
75
15
59
21
3
33
41
1.72
32507119--32507272
41
3.8
41
86
6
192
25
18
18
37
1.93
32510172--32510238
36
1.9
34
93
6
116
46
17
0
35
1.49
32515046--32515088
15
2.9
15
89
3
61
46
0
0
53
1.00
32515032--32515088
7
7.9
7
79
13
53
42
1
0
56
1.10
32516910--32516953
22
2.0
22
81
0
52
52
6
2
38
1.41
32517188--32517367
88
2.0
88
92
2
299
49
17
16
16
1.80
32517206--32517425
88
2.5
88
87
3
293
47
17
18
16
1.83
32517195--32517425
44
5.3
44
81
6
238
47
17
19
15
1.83
32518261--32518347
43
2.0
43
95
0
156
45
5
5
42
1.51
32524472--32524514
19
2.2
20
87
4
61
25
0
0
74
0.82
32524473--32524529
22
2.6
22
81
13
64
24
0
1
73
0.92
32524474--32524531
29
2.0
29
80
12
66
27
0
1
70
0.97
32525375--32525402
2
14.0
2
100
0
56
50
0
0
50
1.00
32526213--32526268
21
2.7
20
81
13
60
33
0
7
58
1.25
32526213--32526263
22
2.3
21
83
12
59
27
0
7
64
1.21
32526225--32526274
21
2.4
21
82
0
64
38
0
6
56
1.24
32527215--32527298
26
3.2
26
96
0
150
33
4
25
36
1.77
32528774--32528826
26
2.0
26
85
7
72
37
22
15
24
1.92
32530135--32530290
77
2.0
77
98
0
303
40
17
17
24
1.91
32530637--32530679
19
2.3
19
84
4
61
60
0
2
37
1.10
32531405--32531478
10
7.7
10
69
24
52
55
2
0
41
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32539810--32539872
4
16.2
4
78
15
62
0
30
0
69
0.88
32539817--32539872
15
3.8
14
83
9
67
0
28
0
71
0.86
32539813--32539880
30
2.3
30
87
7
95
0
30
0
69
0.89
32539810--32539880
10
7.3
10
79
16
78
0
30
0
69
0.89
32541641--32541701
3
20.7
3
96
3
115
31
0
0
68
0.89
32543551--32543608
30
1.9
30
86
6
82
22
32
27
17
1.96
32545064--32545185
65
1.9
63
85
6
165
55
13
5
25
1.59
32547159--32547216
28
2.0
29
86
6
82
37
1
0
60
1.07
32547161--32547193
16
2.1
16
88
11
50
33
3
0
63
1.10
32547158--32547222
28
2.4
28
78
16
66
36
1
0
61
1.05
32548350--32548405
29
2.0
28
82
10
69
51
0
0
48
1.00
32548440--32548503
31
2.1
31
100
0
128
31
3
17
48
1.62
32549261--32549287
11
2.5
11
100
0
54
14
0
0
85
0.61
32549615--32549663
17
2.8
17
87
3
62
34
0
2
63
1.06
32551708--32551784
21
3.7
21
80
0
82
25
32
27
14
1.94
32554878--32554927
24
2.1
24
96
0
91
26
6
18
50
1.69
32556959--32557050
46
2.0
46
100
0
184
32
8
21
36
1.84
32557294--32557320
13
2.1
13
100
0
54
14
33
37
14
1.88
32558079--32558118
20
2.0
20
100
0
80
30
25
5
40
1.77
32562324--32562361
20
1.9
20
88
0
58
44
21
7
26
1.79
32564916--32564974
24
2.5
24
94
5
102
15
37
0
47
1.45
32565024--32565061
2
19.0
2
94
0
67
50
0
2
47
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32566420--32566503
27
3.2
27
69
3
73
44
0
0
55
0.99
32577469--32577521
20
2.7
20
79
2
63
62
5
0
32
1.19
32580264--32580546
61
4.6
61
79
0
269
22
13
23
40
1.89
32580362--32580521
31
5.2
31
70
8
105
21
13
24
40
1.90
32580379--32580494
30
3.8
30
71
8
99
20
15
23
40
1.91
32581939--32582069
41
3.2
41
92
2
210
51
4
20
22
1.65
32584757--32585015
86
3.0
86
88
2
371
33
5
10
49
1.61
32590759--32590926
40
4.2
40
84
3
196
26
27
20
25
1.99
32590749--32590926
80
2.2
80
83
3
216
25
27
20
25
1.99
32604879--32605008
66
1.9
67
84
10
174
33
16
30
20
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378