genome.fa.s1.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  117  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32609393--32609556	42	3.9	43	82	9	203	30	26	16	26	1.97
32609393--32609549	85	1.9	84	86	4	226	29	26	17	27	1.97
32613230--32613495	46	5.7	48	77	9	239	22	30	19	27	1.98
32613230--32613495	140	1.9	141	85	5	369	22	30	19	27	1.98
32620909--32621174	47	5.7	49	78	8	236	22	30	18	28	1.98
32620909--32621132	46	4.8	47	80	10	194	22	30	18	28	1.97
32620911--32621174	140	1.9	141	83	5	347	23	29	18	28	1.98
32622660--32622779	42	2.8	43	78	7	120	26	25	21	25	2.00
32625098--32625185	29	3.1	28	85	6	115	45	14	11	28	1.80
32625107--32625198	29	3.2	29	92	1	150	41	17	13	28	1.86
32633897--32634088	39	4.9	39	90	0	285	23	19	31	25	1.98
32633897--32634117	78	2.8	78	86	2	255	23	20	31	24	1.98
32642875--32642900	13	2.0	13	100	0	52	30	23	7	38	1.83
32650740--32650768	14	2.1	14	100	0	58	37	13	20	27	1.91
32653923--32654029	27	4.0	26	77	9	81	28	17	25	28	1.98
32653956--32654041	26	3.3	26	80	3	100	27	19	23	29	1.98
32654065--32654121	27	2.1	27	83	0	69	29	15	24	29	1.96
32653926--32654121	108	1.8	108	83	4	261	29	15	24	30	1.96
32658948--32659362	38	11.1	38	78	6	400	35	30	20	13	1.92
32659011--32659278	144	1.9	144	85	1	376	35	31	19	13	1.90
32659049--32659355	106	2.8	106	79	9	280	34	30	19	14	1.93
32658973--32659308	182	1.8	182	86	0	483	35	30	19	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32658948--32659355	220	1.9	220	86	2	595	35	30	20	14	1.92
32661451--32661486	2	18.0	2	100	0	72	50	0	0	50	1.00
32661650--32661808	43	3.7	43	78	10	173	22	16	27	32	1.96
32666179--32666361	66	2.8	64	77	9	194	30	17	29	22	1.97
32667441--32667465	2	12.5	2	100	0	50	48	0	0	52	1.00
32669937--32670105	40	4.2	39	78	6	153	26	26	22	24	2.00
32669937--32670105	80	2.1	80	84	4	216	26	26	22	24	2.00
32671874--32672045	43	4.0	42	74	14	129	31	25	19	24	1.98
32686122--32686213	42	2.2	42	84	5	123	30	20	19	29	1.97
32686111--32686261	43	3.5	42	81	8	137	30	24	19	25	1.98
32690122--32690157	17	2.1	18	89	5	56	11	36	36	16	1.84
32694748--32695065	40	8.0	40	89	0	458	27	29	20	22	1.98
32696327--32696435	37	2.9	37	95	0	191	26	31	19	22	1.98
32696582--32697263	48	14.0	48	92	4	1132	30	26	6	36	1.82
32696582--32697263	246	2.8	244	94	2	1185	30	26	6	36	1.82
32704660--32704794	29	4.7	29	85	5	157	24	31	15	28	1.96
32704635--32704793	57	2.8	58	81	1	176	23	33	15	27	1.95
32712668--32712719	25	2.1	25	100	0	104	44	3	25	26	1.71
32716097--32716255	23	6.9	23	85	5	187	30	25	20	23	1.98
32716097--32716255	46	3.5	46	89	1	230	30	25	20	23	1.98
32724905--32725574	27	24.8	27	85	4	823	27	22	9	40	1.85
32725579--32725774	27	7.3	27	85	0	257	35	19	19	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32725972--32726054	27	3.1	26	89	5	121	19	22	21	36	1.95
32726142--32726200	22	2.7	22	81	0	64	20	25	22	32	1.98
32726373--32726437	27	2.5	26	82	9	78	16	21	23	38	1.93
32726554--32726655	6	16.8	6	77	17	104	19	17	13	49	1.80
32726554--32726675	30	4.1	30	87	6	167	19	18	13	49	1.79
32728592--32729125	27	19.8	27	87	4	702	27	22	9	40	1.85
32729130--32729325	27	7.3	27	85	0	248	34	19	20	25	1.96
32729524--32729606	27	3.1	26	89	5	121	19	22	21	36	1.95
32729923--32729988	27	2.5	27	85	7	82	16	22	22	37	1.93
32730106--32730267	6	26.8	6	74	19	142	20	16	13	49	1.79
32730106--32730267	30	5.4	30	94	3	265	20	16	13	49	1.79
32731433--32731460	11	2.5	11	100	0	56	14	0	25	60	1.34
32735359--32735576	40	5.5	40	89	4	293	25	28	22	22	1.99
32741068--32741220	27	5.7	27	91	1	245	41	15	14	28	1.86
32745910--32746128	40	5.5	39	87	3	287	26	28	21	24	1.99
32745910--32746128	80	2.8	80	88	3	318	26	28	21	24	1.99
32745902--32746127	120	1.9	119	91	0	371	26	28	20	23	1.99
32749319--32749401	38	2.2	38	97	0	157	15	10	10	62	1.54
32754736--32754762	9	3.0	9	100	0	54	66	22	0	11	1.22
32759259--32759300	22	1.9	22	90	0	66	33	21	28	16	1.95
32761087--32761123	17	2.1	18	85	14	51	51	13	16	18	1.76
32774505--32774549	22	2.0	22	91	0	72	33	15	26	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32774534--32774590	29	1.9	30	82	3	71	42	22	21	14	1.88
32779412--32779579	40	4.2	40	82	2	196	25	27	22	25	2.00
32787600--32787762	40	4.2	40	78	7	172	27	26	20	25	1.99
32808859--32809113	40	6.4	40	89	4	342	26	23	27	23	2.00
32808854--32809080	79	2.9	80	91	1	377	25	22	27	24	2.00
32808854--32809080	119	1.9	119	91	3	377	25	22	27	24	2.00
32816987--32817215	40	5.7	40	95	0	395	25	23	27	24	2.00
32819554--32819583	6	4.8	6	92	8	51	86	0	0	13	0.57
32819554--32819583	13	2.4	12	94	5	51	86	0	0	13	0.57
32833743--32833790	21	2.3	20	80	16	53	47	4	0	47	1.21
32836423--32836546	48	2.6	48	93	2	205	27	30	17	24	1.97
32839459--32839511	22	2.4	22	72	12	54	33	22	22	20	1.97
32839655--32839777	41	3.0	41	89	0	192	25	30	22	21	1.98
32840036--32840141	27	3.9	27	78	7	106	33	10	16	39	1.83
32840127--32840230	27	3.9	26	82	5	136	29	21	15	33	1.94
32840127--32840230	54	1.9	53	88	1	154	29	21	15	33	1.94
32844511--32844678	40	4.2	39	79	5	160	24	27	22	25	1.99
32844511--32844678	80	2.1	80	83	3	205	24	27	22	25	1.99
32851214--32851385	93	1.8	93	96	0	317	27	30	22	20	1.98
32851206--32851381	46	3.8	46	81	10	232	28	29	21	20	1.98
32855441--32855606	40	4.2	40	80	4	178	25	27	21	25	1.99
32855432--32855606	79	2.2	78	80	7	192	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32858372--32858420	21	2.3	21	100	0	98	28	28	30	12	1.93
32862978--32863236	46	5.5	46	75	14	169	22	28	18	29	1.98
32864813--32864871	27	2.2	26	84	3	73	37	20	22	20	1.95
32864834--32864895	31	2.0	32	87	3	90	35	22	24	17	1.95
32864840--32864981	67	2.1	70	88	5	209	31	23	27	16	1.96
32865614--32865759	27	5.4	27	89	0	202	24	21	19	34	1.96
32872382--32872441	27	2.3	26	85	2	75	35	20	23	21	1.96
32872403--32872466	33	2.0	32	84	9	85	34	20	23	21	1.97
32872482--32872533	27	2.0	26	84	3	68	34	21	26	17	1.95
32873190--32873304	54	2.1	54	88	1	169	24	21	18	35	1.95
32873186--32873304	27	4.4	27	83	0	139	24	21	19	35	1.96
32876886--32876910	13	1.9	13	100	0	50	36	0	8	56	1.29
32878003--32878227	48	4.7	48	82	2	236	30	18	23	28	1.98
32878604--32878674	36	2.0	36	97	0	133	35	15	22	26	1.94
32880673--32880997	160	2.0	160	92	0	533	31	12	24	32	1.92
32885087--32885198	48	2.3	48	81	3	118	29	18	27	24	1.98
32891346--32891379	16	2.2	15	89	5	50	44	0	0	55	0.99
32894405--32894439	14	2.5	14	86	13	54	85	0	14	0	0.59
32896456--32896532	40	1.9	40	86	0	109	37	32	14	15	1.88
32901594--32901621	12	2.3	12	100	0	56	46	17	0	35	1.49
32902334--32902410	40	1.9	40	89	5	120	38	32	12	15	1.86
32902864--32902897	17	2.0	17	94	0	59	11	38	29	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32913091--32913170	28	2.8	28	80	1	79	26	16	33	23	1.95
32913470--32913754	27	10.7	27	85	4	366	38	19	9	32	1.84
32913733--32913796	27	2.4	27	89	0	92	40	15	15	28	1.88
32913470--32913783	107	2.9	104	83	6	378	37	19	10	32	1.86
32916617--32916697	28	2.9	28	81	1	90	27	16	33	23	1.95
32916997--32917077	27	3.0	27	90	3	137	35	19	13	30	1.91
32917005--32917077	26	2.8	26	91	4	103	34	20	15	30	1.93
32921604--32922265	48	13.8	48	92	0	1072	35	6	27	31	1.81
32922310--32922417	37	2.9	37	88	0	162	25	18	29	26	1.98
32930811--32930997	54	3.5	54	85	1	241	39	19	10	31	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378