genome.fa.s1.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  127  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35643156--35643250	47	2.0	47	100	0	190	36	2	29	31	1.69
35643157--35643230	23	3.2	23	65	24	64	35	1	31	32	1.66
35646286--35646447	29	5.5	29	96	2	297	24	24	14	37	1.92
35646286--35646477	59	3.2	59	94	0	321	25	24	14	35	1.93
35646925--35646957	2	16.5	2	100	0	66	48	0	0	51	1.00
35647801--35647836	18	1.9	18	88	5	54	11	25	0	63	1.27
35651943--35652091	80	1.9	80	81	2	183	22	30	24	22	1.99
35651984--35652091	40	2.7	38	85	8	128	21	29	25	23	1.99
35665835--35666020	40	4.7	40	89	5	245	26	26	21	25	1.99
35673974--35674156	40	4.6	39	85	6	219	25	27	21	25	2.00
35676412--35676641	40	5.8	40	95	1	390	26	27	20	26	1.99
35677873--35678017	37	3.9	37	92	0	236	24	32	18	24	1.97
35678062--35678589	48	11.0	48	90	0	804	30	27	6	35	1.82
35696861--35696917	24	2.3	25	85	11	73	59	0	29	10	1.31
35698953--35698994	22	1.9	22	85	9	59	30	14	23	30	1.94
35701337--35701568	27	8.6	27	85	0	286	40	20	8	30	1.81
35701337--35701629	27	10.9	27	78	7	233	39	20	8	30	1.83
35701520--35701677	81	2.0	81	81	5	185	37	21	9	31	1.86
35701552--35701677	27	4.7	27	76	3	110	37	23	8	30	1.85
35701661--35701890	27	8.5	27	87	0	298	36	18	20	25	1.94
35702312--35702452	31	4.6	31	91	2	187	19	17	14	48	1.81
35702312--35702457	6	23.8	6	77	12	145	19	17	13	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35710362--35710422	19	2.9	22	71	28	60	47	0	4	47	1.23
35715292--35715343	25	2.1	26	82	13	65	30	3	23	42	1.72
35721687--35721820	27	5.0	27	84	0	160	26	14	14	43	1.85
35722152--35722202	18	2.8	18	90	0	75	19	19	11	49	1.79
35725071--35725125	27	2.0	27	96	0	101	49	27	3	20	1.65
35727916--35727973	23	2.4	25	77	11	66	22	20	18	37	1.94
35729634--35729718	39	2.2	39	91	0	134	38	22	24	14	1.91
35729636--35729700	21	3.2	21	72	12	55	41	20	24	13	1.88
35730561--35730590	14	2.1	14	93	0	51	40	20	16	23	1.91
35730702--35730789	42	2.1	42	97	0	167	34	18	14	32	1.91
35732417--35732587	93	1.8	93	96	0	315	28	28	21	21	1.99
35732412--35732584	46	3.7	47	79	13	214	28	27	21	21	1.99
35733011--35733070	30	2.0	30	90	0	93	30	25	8	36	1.85
35734699--35734750	27	1.9	27	88	7	79	34	11	13	40	1.81
35734764--35734912	27	5.5	27	84	4	176	28	7	21	42	1.80
35734764--35734912	81	1.8	81	88	2	228	28	7	21	42	1.80
35734787--35734945	54	2.9	54	81	1	167	30	10	20	38	1.87
35734944--35735114	27	6.3	27	84	2	200	39	8	23	28	1.84
35734944--35735114	54	3.2	54	86	1	227	39	8	23	28	1.84
35734932--35735114	81	2.3	81	84	4	237	39	9	22	28	1.86
35734932--35735136	81	2.5	81	81	4	209	38	10	21	29	1.86
35741018--35741241	122	1.9	120	85	7	310	41	10	19	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35746552--35746639	28	3.2	28	64	23	78	30	17	4	47	1.67
35746536--35746645	54	2.0	54	100	0	220	30	16	5	47	1.69
35750955--35751032	39	2.0	39	100	0	156	17	23	33	25	1.96
35753348--35753520	40	4.4	40	88	1	242	26	26	22	24	2.00
35761528--35761743	40	5.5	40	91	1	321	25	26	23	24	2.00
35763129--35763153	11	2.3	11	100	0	50	0	12	0	88	0.53
35773706--35773838	49	2.7	49	78	9	146	27	28	17	27	1.97
35774628--35774678	20	2.7	18	82	14	59	37	21	0	41	1.54
35781470--35781622	40	3.8	39	82	3	146	25	22	28	23	2.00
35785145--35785194	25	2.0	26	84	11	68	36	14	4	46	1.63
35788411--35788466	23	2.4	23	80	14	62	42	19	14	23	1.88
35788808--35788847	20	2.0	20	90	0	62	25	32	20	22	1.98
35794025--35794310	140	2.0	141	87	2	405	35	13	21	29	1.92
35797503--35797548	22	2.1	22	100	0	92	34	21	13	30	1.91
35799403--35799454	25	2.0	26	85	3	70	30	17	15	36	1.91
35804313--35804393	6	13.5	6	69	19	53	3	17	0	79	0.88
35804311--35804393	12	7.0	11	72	14	67	3	16	0	79	0.87
35804311--35804389	22	3.6	21	74	12	70	3	16	0	79	0.87
35810578--35810706	67	1.9	66	85	4	179	23	30	14	31	1.94
35810556--35810808	68	3.8	65	78	8	219	26	28	15	30	1.96
35814979--35815039	28	2.2	28	91	2	97	19	19	22	37	1.94
35815316--35815513	27	7.3	27	89	0	270	29	25	7	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35815316--35815513	81	2.4	81	93	0	324	29	25	7	38	1.82
35815545--35815722	27	6.6	27	87	3	243	41	22	7	28	1.81
35815370--35815779	54	7.6	54	77	6	190	37	22	8	32	1.84
35815734--35815785	27	1.9	27	88	7	79	40	13	11	34	1.81
35815826--35815899	27	2.7	27	76	12	71	37	20	20	21	1.94
35815839--35815903	27	2.4	27	82	5	78	35	18	24	21	1.96
35816711--35816783	25	3.0	23	80	9	74	27	23	23	26	2.00
35816904--35816995	42	2.2	42	96	0	166	31	14	20	33	1.92
35817019--35817133	31	3.7	31	94	1	196	28	15	26	28	1.96
35829475--35829649	77	2.2	78	82	8	205	25	21	27	25	1.99
35829471--35829652	39	4.7	40	81	10	216	24	21	27	25	2.00
35833952--35834114	39	4.2	39	91	0	263	22	20	33	23	1.97
35833952--35834145	39	4.9	39	89	0	253	22	21	32	23	1.98
35841871--35842033	39	4.2	39	91	0	263	22	20	33	23	1.97
35841871--35842064	39	4.9	39	89	0	253	22	21	32	23	1.98
35848649--35848831	40	4.6	39	83	6	219	24	21	28	25	1.99
35848649--35848828	78	2.3	79	84	5	222	25	21	28	25	1.99
35855991--35856042	16	3.2	16	88	2	77	46	26	7	19	1.77
35857140--35857182	8	5.4	8	78	10	52	51	20	20	6	1.71
35857140--35857182	16	2.7	16	88	0	68	51	20	20	6	1.71
35857392--35857502	29	3.9	28	84	2	132	27	12	28	31	1.93
35859264--35859427	71	2.3	71	100	0	328	18	28	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35859264--35859461	71	2.8	70	91	3	258	20	28	17	33	1.95
35866818--35866932	40	3.1	40	59	31	92	21	28	15	33	1.94
35866792--35866953	70	2.3	71	96	3	310	19	27	17	35	1.94
35867405--35867534	40	3.3	39	83	4	163	23	28	25	23	1.99
35875456--35875585	40	3.3	39	83	4	163	23	28	25	23	1.99
35889933--35889976	3	14.7	3	100	0	88	65	0	0	34	0.93
35896184--35896346	40	4.1	40	77	0	146	29	20	15	34	1.93
35896447--35896548	37	2.7	38	84	4	118	40	13	15	30	1.86
35904462--35904501	21	2.0	21	85	5	55	10	32	25	32	1.89
35908938--35909080	26	5.5	26	90	0	223	30	14	24	30	1.95
35942113--35942178	31	2.1	31	94	0	114	51	22	10	15	1.73
35942113--35942197	31	2.7	31	87	1	98	57	20	8	14	1.62
35942914--35942942	13	2.1	14	93	6	51	55	10	0	34	1.34
35944276--35944324	17	2.8	18	74	22	50	24	18	22	34	1.96
35945147--35945297	40	3.8	40	79	6	155	26	23	27	23	2.00
35945183--35945313	40	3.3	40	79	4	149	24	22	26	25	2.00
35950849--35951033	40	4.6	39	85	4	217	28	22	25	23	2.00
35950848--35951054	80	2.6	80	83	4	247	26	22	26	25	2.00
35950847--35951054	40	5.2	39	83	5	211	26	22	25	25	2.00
35953389--35953504	61	1.9	59	82	6	144	42	4	2	50	1.35
35967936--35968107	93	1.8	93	96	0	317	27	29	21	20	1.98
35967929--35968104	46	3.8	46	79	12	216	28	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35971583--35971638	21	2.7	21	91	0	94	19	44	14	21	1.86
35976537--35976696	29	5.5	30	88	8	222	33	13	25	27	1.94
35976537--35976696	59	2.8	57	89	4	223	33	13	25	27	1.94
35984453--35984611	29	5.5	30	86	9	213	33	13	25	27	1.94
35984453--35984611	59	2.8	56	88	5	212	33	13	25	27	1.94
35990243--35990288	18	2.6	18	89	0	65	17	6	13	63	1.50
35990998--35991160	43	3.8	43	69	9	125	28	15	23	32	1.95
35992758--35992810	22	2.4	22	96	0	97	16	28	35	18	1.93
35996170--35996200	10	3.1	10	100	0	62	51	9	0	38	1.35
36011565--36011605	17	2.4	17	91	0	64	17	4	0	78	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378