genome.fa.s1.2.7.7.80.10.50.1000.375.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  375  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112032614--112032649	12	3.0	12	87	0	54	25	22	5	47	1.73
112043032--112043057	2	13.0	2	100	0	52	50	0	0	50	1.00
112048128--112048260	71	1.9	71	90	3	214	30	14	22	33	1.93
112048297--112048560	71	3.7	69	83	6	332	25	14	22	37	1.92
112048439--112048685	122	2.0	124	90	3	392	24	13	22	39	1.90
112048130--112048754	263	2.4	257	93	2	1043	26	14	23	36	1.93
112048560--112048754	72	2.7	71	84	4	248	26	13	23	36	1.92
112048387--112048848	199	2.4	193	84	3	593	26	15	22	35	1.94
112048774--112049025	88	2.9	85	87	4	344	24	17	21	37	1.94
112048932--112049125	71	2.7	71	80	6	221	26	14	23	36	1.93
112049029--112049343	127	2.5	127	95	0	558	26	16	22	34	1.95
112049283--112049528	93	2.7	89	82	6	282	26	17	21	34	1.96
112049365--112049930	165	3.4	167	91	2	874	28	18	20	32	1.96
112049432--112050151	74	9.1	76	73	14	300	29	18	19	32	1.95
112049787--112050294	79	6.5	73	76	11	390	29	16	19	34	1.94
112049786--112050294	72	6.5	77	75	11	378	29	16	19	34	1.94
112049786--112050504	88	9.0	76	72	14	411	28	16	19	35	1.93
112050276--112050337	30	2.1	30	90	6	99	19	9	29	41	1.83
112049928--112050505	255	2.3	249	84	6	744	27	16	18	37	1.93
112051040--112051080	19	2.4	17	84	15	50	60	7	0	31	1.24
112055254--112055293	6	6.7	6	100	0	80	17	50	0	32	1.47
112066241--112066278	16	2.3	17	90	4	60	31	7	0	60	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112072365--112072503	67	2.1	67	97	0	260	27	10	17	44	1.81
112082548--112082910	181	2.0	181	93	0	627	34	18	17	29	1.94
112085588--112085657	23	3.0	23	82	2	86	27	8	18	45	1.78
112085606--112085673	23	2.9	23	80	6	66	30	5	17	45	1.72
112086696--112086777	43	1.9	42	97	2	155	36	28	7	28	1.84
112088984--112089022	20	2.1	18	85	9	51	53	5	17	23	1.63
112093884--112093915	14	2.3	14	100	0	64	46	18	9	25	1.79
112099211--112099256	24	1.9	24	90	0	74	34	8	8	47	1.65
112106516--112106561	10	4.2	11	79	20	51	30	0	2	67	1.03
112106506--112106557	10	4.9	10	77	13	50	28	0	5	65	1.16
112110590--112110657	34	2.0	34	100	0	136	32	20	14	32	1.93
112110846--112110903	28	2.1	28	96	0	107	12	17	15	55	1.70
112116106--112116153	25	1.9	25	83	8	62	52	2	4	41	1.32
112119702--112119749	13	3.8	12	78	10	51	43	0	16	39	1.48
112119697--112119751	26	2.1	26	86	6	76	45	0	14	40	1.45
112122116--112122170	27	2.0	27	100	0	110	25	25	34	14	1.94
112122967--112123042	6	12.7	6	77	0	80	40	34	25	0	1.56
112123119--112123391	45	6.2	45	89	3	410	58	7	30	3	1.42
112123121--112123386	132	2.0	135	90	2	421	59	7	29	3	1.43
112128059--112128122	6	10.7	6	75	0	65	40	35	23	0	1.55
112128059--112128122	18	3.6	18	97	0	119	40	35	23	0	1.55
112128201--112128345	45	3.3	45	87	5	215	59	8	28	3	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112128939--112128990	25	2.1	25	100	0	104	23	36	3	36	1.73
112131812--112131873	26	2.4	25	78	7	70	37	4	22	35	1.76
112132102--112132165	33	1.9	33	81	12	78	48	1	0	50	1.10
112132348--112132374	9	3.0	9	100	0	54	33	11	0	55	1.35
112134097--112134134	19	2.1	19	90	5	60	31	5	0	63	1.17
112134138--112134163	6	4.3	6	100	0	52	84	0	15	0	0.62
112134446--112134486	20	2.0	20	100	0	82	24	19	24	31	1.98
112134535--112134587	12	4.4	12	72	9	54	32	18	16	32	1.94
112140889--112140914	6	4.3	6	100	0	52	53	15	30	0	1.42
112148064--112148110	21	2.2	21	84	0	58	0	23	6	70	1.10
112156616--112156642	12	2.2	12	100	0	54	51	14	25	7	1.68
112163483--112163525	5	8.6	5	80	10	52	76	0	4	18	0.95
112163485--112163520	10	3.7	10	96	3	65	75	0	5	19	1.00
112184201--112184247	23	2.0	23	100	0	94	42	12	4	40	1.63
112184779--112184819	18	2.2	19	87	12	59	29	24	0	46	1.53
112184966--112185077	38	2.8	40	72	5	102	31	26	18	23	1.98
112185316--112185354	18	2.1	19	90	4	62	48	10	0	41	1.37
112186670--112186722	5	10.0	5	80	11	61	56	1	0	41	1.10
112186669--112186724	12	4.5	12	81	16	69	55	1	0	42	1.10
112190503--112190550	19	2.6	19	83	3	62	33	2	16	47	1.58
112190564--112190656	43	2.2	43	94	3	161	27	5	13	52	1.62
112195220--112195259	19	2.2	19	90	4	64	37	2	17	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112195220--112195267	19	2.6	19	83	3	62	33	2	16	47	1.58
112195277--112195373	43	2.3	43	91	5	153	30	5	11	52	1.59
112206971--112207023	26	2.0	26	96	0	97	45	11	13	30	1.78
112217150--112217192	15	2.9	15	79	6	52	74	2	2	20	1.04
112220679--112220723	24	1.9	24	86	4	65	44	0	2	53	1.13
112220677--112220729	24	2.3	23	78	15	63	43	0	1	54	1.11
112220917--112220967	13	3.9	13	78	0	66	35	25	7	31	1.85
112220915--112220969	26	2.1	26	89	0	83	34	23	7	34	1.83
112221952--112222057	48	2.2	48	93	0	176	33	5	27	33	1.80
112225247--112225297	24	2.1	24	82	7	59	41	3	1	52	1.31
112233614--112233652	21	1.9	21	89	5	62	56	7	0	35	1.28
112235081--112235144	27	2.3	29	81	5	69	50	29	9	10	1.69
112236888--112237129	35	7.0	35	71	13	162	27	27	11	33	1.91
112237024--112237089	18	3.7	18	68	11	55	22	27	15	34	1.94
112254535--112254592	21	2.8	21	84	5	73	12	20	17	50	1.78
112261904--112261941	7	5.4	7	100	0	76	26	13	15	44	1.83
112262324--112262353	15	2.1	15	93	6	53	60	0	0	40	0.97
112277299--112277364	31	2.1	31	100	0	132	33	19	21	25	1.97
112281101--112281179	37	2.1	37	88	0	113	50	13	17	17	1.78
112281090--112281270	12	14.7	12	68	17	95	48	13	17	20	1.81
112281112--112281220	37	2.9	37	82	8	125	48	14	18	18	1.81
112281113--112281270	62	2.5	62	88	0	235	48	13	17	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112281112--112281270	25	6.4	25	74	12	100	47	13	17	20	1.82
112281512--112281563	27	2.0	26	84	3	68	34	21	26	17	1.95
112281798--112282257	27	17.1	27	85	0	553	41	8	21	29	1.81
112282253--112282386	27	5.0	26	79	10	101	29	10	20	39	1.86
112282253--112282358	54	2.0	54	81	7	126	29	11	19	39	1.87
112282322--112282407	27	3.2	27	91	3	129	31	9	19	39	1.84
112282402--112282471	27	2.6	27	90	0	104	30	22	15	31	1.95
112282322--112282434	54	2.1	54	80	3	120	30	12	18	38	1.88
112283775--112283882	26	4.2	26	92	0	180	33	7	23	36	1.83
112288487--112288553	8	8.5	8	86	6	84	65	1	1	31	1.10
112288791--112288866	25	2.9	26	76	7	82	59	1	5	34	1.28
112289422--112289536	30	3.8	30	91	0	185	22	3	47	26	1.67
112289422--112289536	60	1.9	60	96	0	212	22	3	47	26	1.67
112290323--112290351	14	2.1	14	100	0	58	65	6	13	13	1.45
112290107--112290425	89	3.6	89	81	4	358	36	19	17	26	1.94
112290481--112290515	14	2.5	14	100	0	70	57	5	20	17	1.60
112290282--112291157	164	5.3	163	81	11	946	33	20	17	27	1.95
112290574--112290604	16	1.9	16	93	0	53	64	6	12	16	1.47
112290406--112290752	89	3.8	89	87	3	471	34	20	17	27	1.95
112290662--112290696	14	2.5	14	95	0	61	60	5	17	17	1.55
112290591--112291140	151	3.4	164	85	7	640	32	21	17	29	1.96
112290860--112291140	76	3.7	76	91	2	442	28	22	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112292684--112292742	28	2.1	28	100	0	118	16	11	25	45	1.82
112293363--112293424	27	2.3	27	91	0	97	27	16	16	40	1.89
112293380--112293530	54	2.8	54	86	2	160	29	9	19	41	1.83
112293378--112293530	81	1.9	81	86	5	220	30	9	19	40	1.83
112293407--112293530	27	4.6	27	85	2	169	30	7	20	41	1.79
112293514--112293584	27	2.6	27	75	4	72	29	7	26	36	1.83
112293407--112293530	54	2.3	54	92	0	203	30	7	20	41	1.79
112293404--112293557	81	1.9	81	79	2	175	31	7	21	38	1.82
112300093--112300137	11	3.8	12	82	11	58	57	4	0	37	1.19
112300837--112300871	10	3.5	10	84	0	52	82	2	14	0	0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378