Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  208  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61471384--61471452
15
4.7
15
80
8
79
59
17
14
8
1.60
61474348--61474521
46
3.8
45
81
12
219
28
28
21
21
1.98
61474356--61474526
92
1.8
93
94
1
308
28
29
21
21
1.98
61477847--61477907
20
3.2
20
68
17
67
31
27
21
19
1.97
61480289--61480377
30
3.0
30
80
8
101
57
15
16
10
1.65
61480289--61480368
15
5.4
15
80
7
92
58
13
17
10
1.62
61480300--61480377
15
5.2
15
78
9
79
56
15
16
11
1.67
61483336--61483462
47
2.7
47
97
0
245
28
29
19
22
1.98
61490421--61490451
2
15.5
2
100
0
62
51
0
0
48
1.00
61491541--61491717
63
2.8
63
76
13
157
24
29
16
28
1.96
61513151--61513219
30
2.3
30
100
0
138
15
24
39
20
1.92
61515756--61515806
22
2.3
22
89
0
75
13
17
27
41
1.87
61518743--61518885
3
46.7
3
80
5
117
55
6
1
37
1.34
61525853--61525963
27
4.1
27
96
0
195
45
31
6
16
1.72
61527445--61527495
24
2.1
24
100
0
102
37
11
3
47
1.59
61527484--61527553
22
3.1
22
78
15
56
41
17
1
40
1.58
61528997--61529036
21
2.0
21
95
5
73
75
0
20
5
0.99
61529003--61529047
21
2.1
21
84
8
56
80
0
13
6
0.91
61534657--61534686
11
2.7
11
94
0
51
40
6
3
50
1.45
61535225--61535252
4
7.0
4
100
0
56
25
0
0
75
0.81
61536942--61537104
70
2.3
70
87
0
218
33
23
12
31
1.91
61536942--61537104
35
4.7
35
85
1
175
33
23
12
31
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61540385--61540471
43
2.0
43
90
0
138
28
29
19
21
1.98
61540448--61540548
43
2.4
42
81
5
114
34
27
15
21
1.94
61543061--61543110
26
2.0
24
88
7
73
30
0
6
64
1.18
61545782--61545846
32
2.0
32
100
0
130
35
18
12
33
1.88
61549274--61549444
46
3.7
44
80
9
182
23
29
20
26
1.99
61552506--61552690
79
2.3
81
83
7
227
23
27
24
24
2.00
61552499--61552690
40
4.8
39
76
8
163
23
28
23
24
2.00
61560535--61560719
79
2.3
81
83
7
227
23
27
24
24
2.00
61560528--61560719
40
4.8
39
76
8
163
23
28
23
24
2.00
61563685--61563721
15
2.3
17
86
9
51
40
10
18
29
1.85
61564047--61564091
23
2.0
23
95
0
81
26
31
28
13
1.94
61575245--61575282
20
1.9
20
88
0
58
44
21
7
26
1.79
61587945--61588046
51
2.0
51
100
0
204
29
19
15
35
1.93
61588086--61588156
35
2.0
35
100
0
142
50
11
11
26
1.72
61592267--61592364
40
2.5
40
98
0
187
32
14
19
33
1.92
61592700--61592734
17
2.1
17
94
0
61
31
8
11
48
1.69
61593753--61593800
16
3.0
16
79
17
55
52
0
2
45
1.12
61593713--61593797
26
3.1
25
73
15
71
48
0
2
49
1.14
61593713--61593811
29
3.5
27
76
16
87
48
0
3
48
1.17
61594446--61594505
23
2.7
22
72
20
54
35
0
1
63
1.05
61594436--61594501
31
2.1
31
86
5
89
36
0
3
60
1.12
61597585--61598634
132
8.0
132
89
0
1611
26
24
20
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61597585--61598634
263
4.0
264
89
0
1604
26
24
20
28
1.99
61597585--61598634
395
2.7
394
93
0
1731
26
24
20
28
1.99
61598702--61598829
64
2.0
64
86
3
177
35
13
18
32
1.90
61599539--61599613
28
2.4
32
72
27
79
56
12
10
21
1.66
61599557--61599622
28
2.4
28
92
5
109
57
10
12
19
1.63
61599982--61600021
13
3.1
13
82
10
55
0
25
0
75
0.81
61602695--61602742
19
2.5
19
87
9
71
43
10
22
22
1.84
61604804--61604899
26
3.6
27
78
9
74
59
4
4
32
1.36
61605053--61605118
27
2.5
25
77
15
71
51
0
13
34
1.41
61605248--61605304
25
2.3
25
78
6
62
61
3
5
29
1.35
61606302--61606367
25
2.6
25
76
9
62
30
4
3
62
1.30
61606487--61606545
27
2.2
27
81
6
66
35
11
0
52
1.38
61606562--61606645
29
3.0
28
81
8
100
34
3
1
60
1.21
61606693--61606788
26
3.6
26
77
13
72
32
4
4
59
1.36
61610757--61610789
10
3.3
10
91
0
57
0
42
0
57
0.98
61611108--61611162
18
2.8
19
83
10
67
52
5
0
41
1.24
61614038--61614064
1
27.0
1
100
0
54
0
0
0
100
0.00
61616736--61616777
6
7.0
6
83
0
57
66
2
16
14
1.35
61616733--61616777
18
2.5
18
85
0
63
62
2
20
15
1.43
61617986--61618055
30
2.3
30
87
2
104
41
12
20
25
1.88
61622805--61622879
30
2.6
30
89
4
109
30
22
12
34
1.91
61632899--61632945
21
2.2
21
85
7
60
38
19
14
27
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61633030--61633077
24
2.0
24
91
0
78
31
18
27
22
1.97
61635791--61635848
29
2.0
29
100
0
116
31
13
27
27
1.94
61635794--61635855
29
2.1
29
93
0
106
32
17
24
25
1.97
61640371--61640548
51
3.6
48
78
9
187
30
25
18
25
1.98
61656535--61656574
15
2.6
16
84
4
55
0
27
7
65
1.20
61657054--61657093
13
3.1
13
96
0
71
27
30
35
7
1.84
61661599--61661745
75
2.0
75
94
0
258
32
15
16
35
1.90
61669645--61669744
51
2.0
51
84
4
130
31
25
20
24
1.98
61669703--61669788
43
2.0
43
84
4
111
31
29
18
20
1.97
61674834--61675018
40
4.7
40
81
7
200
25
22
26
24
2.00
61685693--61685729
2
18.5
2
100
0
74
0
0
48
51
1.00
61688777--61688888
27
4.2
26
86
7
143
37
24
23
15
1.93
61688777--61688888
54
2.1
54
89
3
172
37
24
23
15
1.93
61690278--61690329
25
2.1
25
92
0
86
23
42
3
30
1.72
61690278--61690341
25
2.6
25
87
2
76
20
43
3
32
1.67
61696597--61696705
27
4.1
26
85
5
137
37
22
22
16
1.93
61698081--61698139
25
2.4
24
86
5
82
22
40
1
35
1.64
61698083--61698146
25
2.6
25
85
2
76
20
43
1
34
1.61
61708161--61708246
43
2.0
43
90
0
136
23
25
2
48
1.62
61713689--61713874
40
4.7
40
88
5
252
23
20
27
27
1.99
61725980--61726081
40
2.5
40
78
12
102
26
23
27
22
2.00
61730458--61730730
50
5.6
50
81
6
287
23
30
18
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61730411--61730733
95
3.3
95
82
5
303
23
29
18
27
1.98
61730405--61730739
145
2.3
144
85
7
437
24
29
18
27
1.98
61736482--61736645
71
2.3
71
100
0
328
18
28
17
35
1.94
61744052--61744214
70
2.3
71
98
1
319
19
28
17
34
1.94
61744052--61744248
70
2.8
69
91
4
265
20
28
17
33
1.95
61749564--61749685
49
2.5
49
81
9
135
27
13
31
27
1.93
61750974--61751023
20
2.7
18
77
22
59
50
2
2
46
1.24
61754842--61754868
5
5.4
5
100
0
54
77
0
0
22
0.76
61759515--61759584
27
2.5
28
86
2
97
32
25
14
27
1.94
61759592--61759698
42
2.5
42
96
0
196
22
33
14
28
1.94
61774298--61774360
16
3.9
16
78
0
63
44
19
22
14
1.86
61774584--61774685
29
3.6
29
84
6
127
26
16
29
27
1.97
61774967--61775022
27
2.1
27
86
0
76
48
23
14
14
1.80
61785257--61785443
71
2.7
68
93
5
281
18
28
18
34
1.95
61785280--61785443
71
2.3
71
100
0
328
18
28
17
35
1.94
61785280--61785477
71
2.8
70
92
3
276
20
28
17
33
1.95
61792823--61793009
71
2.7
68
93
5
281
18
28
18
34
1.95
61792846--61793009
71
2.3
71
100
0
328
18
28
17
35
1.94
61792846--61793043
71
2.8
70
92
3
276
20
28
17
33
1.95
61797400--61797448
24
1.9
27
88
12
77
36
4
10
48
1.56
61798493--61798524
15
2.0
17
88
11
50
25
0
31
43
1.55
61799828--61799870
13
3.1
14
87
9
54
18
6
0
74
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61799829--61799939
40
3.0
36
69
20
86
20
7
1
70
1.21
61801528--61801572
6
7.2
6
81
18
56
15
0
4
80
0.87
61801512--61801572
26
2.3
26
82
5
68
14
1
4
78
0.99
61803041--61803203
43
3.8
42
77
5
141
30
23
16
28
1.96
61815630--61815802
40
4.3
41
79
5
185
26
25
21
26
2.00
61815621--61815802
80
2.3
80
80
2
206
25
25
21
26
2.00
61821626--61821724
28
3.5
28
81
9
112
29
25
16
29
1.96
61829287--61829385
28
3.5
28
81
9
112
29
25
16
29
1.96
61837157--61837340
40
4.6
40
81
2
172
28
22
26
22
1.99
61837197--61837385
80
2.4
80
77
5
184
24
22
29
23
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378