Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  115  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32067613--32067703
45
2.0
45
95
0
164
27
19
9
42
1.83
32071639--32071671
14
2.3
15
94
5
59
45
12
0
42
1.41
32082601--32082732
10
13.8
10
71
22
65
35
3
0
60
1.15
32082618--32082661
17
2.6
18
89
7
65
31
6
0
61
1.22
32082618--32082668
17
2.9
18
82
5
52
35
7
0
56
1.28
32082601--32082750
29
5.3
28
74
13
103
35
4
0
60
1.15
32082595--32082750
9
16.6
9
74
12
109
34
3
0
60
1.19
32082698--32082760
18
3.5
18
85
12
85
31
3
0
65
1.09
32082700--32082766
9
7.1
9
86
13
50
32
4
0
62
1.15
32082782--32082854
32
2.3
32
88
4
103
52
5
4
38
1.44
32085534--32085724
49
3.9
49
84
2
256
25
18
25
30
1.98
32085541--32085723
100
1.8
100
95
0
330
25
18
25
31
1.97
32085541--32085766
100
2.3
100
86
3
285
27
17
25
30
1.97
32086385--32086493
26
4.2
26
94
2
166
34
5
22
36
1.78
32086385--32086493
51
2.1
52
89
1
166
34
5
22
36
1.78
32089607--32089728
58
2.1
58
98
1
237
31
7
13
47
1.71
32091138--32091194
29
1.9
30
92
3
98
54
14
5
26
1.61
32091228--32091276
22
2.2
22
81
0
62
59
8
12
20
1.58
32092455--32092494
19
2.1
19
95
0
71
65
5
7
22
1.38
32096357--32096401
19
2.4
19
100
0
90
44
33
11
11
1.75
32101245--32101323
42
1.9
41
94
2
140
32
2
15
49
1.58
32104929--32104971
22
2.0
22
82
13
54
13
27
6
51
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32106299--32106335
19
1.9
19
94
0
65
37
16
5
40
1.71
32108387--32108421
17
2.1
17
94
0
61
11
8
22
57
1.61
32111735--32111797
31
2.0
31
96
0
117
33
12
11
42
1.78
32117081--32117446
49
7.4
49
94
1
624
34
8
26
30
1.86
32117515--32117601
37
2.3
36
92
5
138
21
18
33
26
1.96
32122230--32122389
29
5.5
29
82
4
180
25
31
16
26
1.97
32130288--32130447
29
5.5
29
82
4
180
25
31
16
26
1.97
32135455--32135621
40
4.2
40
82
2
185
25
27
21
25
1.99
32135455--32135621
80
2.1
79
83
7
205
25
27
21
25
1.99
32136447--32136492
17
2.5
19
74
22
53
34
23
17
23
1.96
32138260--32138319
21
2.9
21
75
9
61
38
31
15
15
1.88
32142045--32142212
40
4.2
40
83
1
185
24
26
23
25
2.00
32156215--32156318
52
2.0
52
98
1
201
36
13
9
40
1.77
32158379--32158412
18
1.9
18
88
5
52
29
17
11
41
1.85
32159638--32159734
28
3.5
28
84
4
106
23
37
17
21
1.94
32165446--32165737
145
2.0
145
98
0
566
34
19
11
33
1.88
32166472--32166641
93
1.8
93
89
2
270
28
25
21
24
1.99
32166464--32166687
46
4.8
46
80
6
265
29
25
20
24
1.99
32171692--32171862
93
1.8
93
93
0
297
29
27
19
23
1.98
32171685--32171906
46
4.8
46
82
9
263
29
27
19
23
1.98
32175994--32176116
42
2.9
42
87
1
174
29
27
15
27
1.96
32176048--32176272
48
4.8
48
75
9
187
29
28
15
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32180599--32181024
35
12.1
35
76
6
295
33
30
3
32
1.76
32180626--32181024
70
5.7
69
79
5
377
33
30
3
32
1.76
32180807--32181053
108
2.2
112
80
2
277
33
29
4
32
1.76
32182419--32182585
40
4.2
40
82
2
185
25
27
21
25
1.99
32182419--32182585
80
2.1
79
83
7
205
25
27
21
25
1.99
32183410--32183455
17
2.5
19
74
22
53
34
23
17
23
1.96
32190420--32190586
40
4.2
40
82
2
185
25
27
21
25
1.99
32190420--32190586
80
2.1
79
83
7
205
25
27
21
25
1.99
32191411--32191456
17
2.5
19
74
22
53
34
23
17
23
1.96
32198992--32199128
40
3.5
40
85
5
172
25
28
19
26
1.99
32199124--32199291
40
4.2
40
82
6
191
26
20
26
26
1.99
32207219--32207395
79
2.2
80
82
5
200
25
20
27
25
1.99
32207219--32207395
40
4.5
40
80
9
184
25
20
27
25
1.99
32211947--32211983
18
2.1
18
100
0
74
27
10
16
45
1.80
32212079--32212294
107
2.0
107
97
0
405
28
18
21
31
1.97
32213745--32213803
29
2.0
29
100
0
118
49
6
16
27
1.71
32214278--32214424
41
3.5
42
75
12
133
25
19
23
31
1.98
32215149--32215191
11
4.1
10
80
11
50
16
2
27
53
1.55
32217738--32217912
46
3.8
47
77
11
166
27
18
30
24
1.98
32219132--32219170
21
1.9
21
89
5
62
10
35
30
23
1.88
32237419--32237463
16
2.6
18
89
10
67
71
2
4
22
1.15
32246612--32246720
34
3.2
33
85
6
137
43
0
15
41
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32246828--32247157
126
2.6
125
89
1
489
35
18
16
29
1.94
32249959--32250112
42
3.6
42
84
5
177
30
23
15
30
1.95
32252094--32252141
24
2.0
24
84
8
62
56
4
0
39
1.19
32253097--32253179
26
3.2
25
93
5
139
34
4
24
36
1.77
32254894--32255167
137
2.0
136
99
0
539
24
18
24
31
1.98
32258917--32258998
25
3.2
25
89
8
130
35
4
23
36
1.76
32260717--32260989
136
2.0
136
99
0
537
25
18
24
31
1.98
32267553--32267592
21
1.9
21
84
0
53
45
2
25
27
1.66
32267564--32267621
9
5.8
9
74
21
53
43
1
24
31
1.64
32267558--32267621
30
2.1
30
97
0
119
42
3
26
28
1.70
32270093--32270121
6
5.0
6
95
4
51
86
0
13
0
0.58
32275950--32276167
40
5.5
40
91
2
334
23
22
28
24
2.00
32279895--32280110
39
5.5
40
84
9
266
25
25
22
25
2.00
32279928--32280114
79
2.4
79
86
8
265
26
25
22
25
2.00
32283804--32283850
22
2.1
23
84
11
62
59
12
17
10
1.60
32297196--32297359
27
6.1
27
84
0
193
35
13
21
29
1.92
32297196--32297359
54
3.0
53
85
1
220
35
13
21
29
1.92
32298909--32298951
15
2.9
14
80
19
52
53
23
0
23
1.46
32303658--32303685
14
2.0
14
100
0
56
35
0
28
35
1.58
32315016--32315126
37
3.0
37
93
0
177
29
30
17
22
1.96
32315016--32315154
74
1.9
74
81
3
172
28
29
17
25
1.97
32315016--32315154
37
3.8
36
83
7
154
28
29
17
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32315230--32315659
47
9.3
47
88
6
565
25
29
12
32
1.92
32315342--32315419
25
3.2
25
68
17
83
29
32
8
29
1.88
32315455--32315530
37
2.1
37
100
0
152
25
27
13
34
1.93
32315408--32315577
84
2.0
84
93
0
286
25
30
12
31
1.93
32315361--32315622
131
2.0
131
94
1
463
24
30
12
31
1.93
32315492--32315667
98
1.8
94
85
4
244
25
28
13
32
1.94
32315492--32315696
98
2.1
94
82
3
239
26
29
11
32
1.92
32315492--32315696
47
4.3
47
86
4
212
26
29
11
32
1.92
32321729--32321831
29
3.6
28
82
5
125
21
15
33
30
1.94
32321738--32321863
58
2.2
58
81
7
141
23
14
30
31
1.94
32344522--32344579
20
2.9
20
81
0
80
31
8
13
46
1.74
32344495--32344579
40
2.1
40
85
8
111
28
9
15
47
1.76
32361381--32361427
22
2.2
22
84
3
60
19
31
31
17
1.94
32363109--32363169
30
2.0
30
100
0
122
37
32
13
16
1.87
32366377--32366584
40
5.2
40
84
2
249
25
21
26
26
1.99
32370079--32370114
17
2.1
17
90
10
56
30
11
8
50
1.67
32370795--32370889
39
2.4
39
76
16
99
44
4
1
50
1.28
32373790--32374899
228
4.9
227
82
2
1123
23
23
22
31
1.99
32373759--32374899
456
2.5
455
81
1
1293
23
23
22
30
1.99
32376413--32376443
16
2.0
15
93
6
53
58
0
0
41
0.98
32376456--32376509
26
2.1
26
92
0
90
57
5
7
29
1.49
32376783--32376836
26
2.0
27
82
3
65
42
0
1
55
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32384126--32384350
124
1.8
124
85
1
317
30
11
23
34
1.90
32384345--32384474
40
3.2
40
82
4
165
23
24
28
23
2.00
32384307--32384474
80
2.1
80
81
6
198
25
23
27
23
2.00
32393156--32393321
40
4.2
40
81
3
176
24
27
21
25
1.99
32393172--32393283
39
2.8
38
85
4
134
25
29
22
23
1.99
32393172--32393321
79
1.9
78
83
6
196
24
28
22
26
1.99
32394144--32394189
17
2.5
19
74
22
53
34
23
17
23
1.96
32401153--32401319
40
4.2
40
82
2
185
25
27
21
25
1.99
32401153--32401319
80
2.1
79
83
7
205
25
27
21
25
1.99
32402145--32402190
17
2.5
19
74
22
53
34
23
17
23
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378