Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  202  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59750369--59751000
324
2.0
324
97
0
1183
30
13
22
32
1.93
59755364--59755412
17
2.8
18
74
22
50
24
18
22
34
1.96
59756235--59756401
40
4.2
40
79
6
169
25
21
27
25
1.99
59766637--59766685
17
2.8
18
74
22
50
24
18
22
34
1.96
59767506--59767672
40
4.2
40
79
6
169
25
21
27
25
1.99
59774948--59775144
54
3.6
54
85
4
263
36
17
23
21
1.95
59777600--59777691
27
3.5
26
86
7
123
38
19
20
21
1.94
59783541--59783601
30
2.0
31
83
3
79
36
6
21
36
1.79
59785304--59785590
27
10.6
27
88
0
385
39
21
8
30
1.83
59785304--59785643
27
12.6
27
79
7
192
39
21
8
30
1.84
59785304--59785643
81
4.2
81
82
5
366
39
21
8
30
1.84
59785686--59785900
27
8.0
27
90
1
308
35
18
21
24
1.95
59786554--59786655
27
3.8
26
83
5
105
21
22
19
36
1.95
59786553--59786655
54
1.9
53
82
2
125
22
22
19
35
1.96
59786815--59786939
6
20.3
6
68
16
60
22
20
12
44
1.85
59786792--59786934
31
4.6
31
86
4
162
22
18
12
46
1.83
59787595--59787744
55
2.8
53
80
6
185
36
18
26
19
1.95
59787593--59787754
53
3.0
54
81
5
193
35
17
25
20
1.95
59789868--59789901
17
2.0
17
100
0
68
47
0
29
23
1.52
59792555--59792657
29
3.6
28
81
5
116
21
16
33
29
1.95
59800352--59800454
29
3.6
28
81
5
116
21
16
33
29
1.95
59803269--59803445
27
6.6
27
83
0
192
24
15
18
41
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59803249--59803412
54
3.0
54
82
3
188
27
16
17
38
1.91
59803271--59803445
81
2.2
81
84
0
215
24
16
18
41
1.90
59803722--59803783
18
3.5
18
80
4
72
22
19
12
45
1.84
59803739--59803774
17
2.1
17
89
0
54
25
19
8
47
1.77
59806923--59807080
27
5.9
27
84
0
181
25
14
18
41
1.88
59818773--59818885
48
2.4
48
92
3
183
35
23
18
22
1.96
59818773--59818906
48
2.8
47
88
4
180
37
23
17
21
1.94
59818889--59818924
18
2.0
18
100
0
72
55
16
11
16
1.68
59818845--59818970
66
1.9
66
86
3
182
40
24
14
20
1.90
59819539--59819577
21
1.9
20
89
5
60
56
20
0
23
1.42
59821547--59821718
67
2.6
66
81
7
170
31
16
29
22
1.96
59821571--59821754
67
2.8
64
78
8
203
28
16
30
23
1.96
59824417--59824467
25
2.0
25
96
0
93
43
11
13
31
1.80
59827325--59827373
21
2.3
21
96
0
89
38
28
12
20
1.89
59829046--59829243
71
2.8
70
92
3
294
33
17
28
20
1.95
59829112--59829229
41
3.1
41
60
28
98
32
17
28
21
1.96
59829080--59829243
71
2.3
71
100
0
328
35
17
28
18
1.94
59833272--59833343
36
2.0
36
100
0
144
36
30
11
22
1.89
59842103--59842140
18
2.1
18
100
0
76
39
10
0
50
1.37
59842333--59842400
28
2.4
28
82
7
75
48
8
4
38
1.54
59842359--59842428
28
2.5
28
88
4
97
48
10
7
34
1.64
59842445--59842557
32
3.5
34
73
20
107
39
16
2
40
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59842447--59842526
36
2.2
37
84
10
103
37
17
2
42
1.63
59843822--59843851
15
2.0
15
93
0
51
23
6
3
66
1.30
59843886--59844016
65
2.0
65
95
0
235
27
22
10
39
1.87
59844605--59844712
51
2.1
51
84
6
148
45
15
6
32
1.72
59844682--59844714
17
1.9
17
93
0
57
51
15
6
27
1.66
59845061--59845098
20
2.0
19
90
10
60
47
5
5
42
1.48
59847420--59847634
40
5.5
40
93
5
359
23
23
28
24
1.99
59855400--59855535
40
3.5
40
92
5
208
24
23
28
23
1.99
59859135--59859319
79
2.3
82
83
7
229
24
24
27
23
2.00
59859136--59859327
40
4.8
40
79
7
151
24
24
28
22
2.00
59859135--59859352
79
2.7
79
79
6
183
24
23
27
24
2.00
59864883--59864947
29
2.2
29
94
0
112
30
16
27
24
1.97
59871555--59871616
25
2.5
24
80
10
72
74
1
17
6
1.11
59872782--59872846
29
2.2
29
94
0
112
30
16
27
24
1.97
59875107--59875151
23
2.0
21
84
16
56
40
6
0
53
1.27
59875080--59875150
31
2.3
31
83
13
85
40
5
0
53
1.24
59877079--59877152
28
2.6
28
89
8
123
27
35
13
24
1.93
59891214--59891249
18
2.1
18
89
5
56
27
22
11
38
1.88
59894454--59894509
11
5.5
11
71
16
57
35
12
19
32
1.89
59894443--59894509
20
3.3
20
93
0
116
34
11
20
32
1.90
59894559--59894750
24
8.0
24
90
4
271
30
22
20
26
1.98
59902778--59902816
20
2.0
20
100
0
78
35
12
20
30
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59902866--59903034
24
7.0
24
91
4
243
28
23
21
26
1.99
59911949--59912057
42
2.6
43
75
4
114
27
22
20
29
1.98
59913320--59913393
28
2.6
28
89
8
123
27
36
13
22
1.92
59916763--59916980
40
5.5
40
92
2
334
25
27
22
24
2.00
59918692--59918730
20
2.0
20
89
0
60
46
20
0
33
1.51
59923009--59923073
29
2.2
29
94
0
112
30
16
27
24
1.97
59927467--59927497
16
1.9
16
93
0
53
54
16
0
29
1.42
59928764--59928798
3
11.7
3
93
0
61
68
28
0
2
1.04
59930164--59930196
16
2.1
16
88
11
50
42
6
0
51
1.26
59932640--59932670
4
7.8
4
100
0
62
22
0
0
77
0.77
59936296--59936367
37
2.2
30
74
25
74
13
15
6
63
1.49
59937247--59937292
22
2.1
22
88
11
69
32
0
2
65
1.05
59937316--59937355
21
2.0
20
90
5
62
42
0
2
55
1.13
59937265--59937423
61
2.6
59
82
4
185
43
0
3
52
1.24
59937596--59937665
32
2.2
32
86
0
104
28
25
4
41
1.74
59937613--59937665
16
3.3
16
81
0
70
30
28
1
39
1.67
59941307--59941344
14
2.7
15
88
8
53
23
21
5
50
1.69
59947469--59947520
26
2.0
26
96
0
95
30
13
30
25
1.94
59949570--59949696
44
2.8
45
79
3
141
26
18
25
29
1.98
59949584--59949694
45
2.5
44
80
4
125
28
18
27
26
1.98
59949523--59950082
189
3.0
184
80
7
640
31
19
20
27
1.97
59950186--59950216
11
2.8
11
100
0
62
58
22
19
0
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59952175--59952298
46
2.7
47
74
10
112
26
4
7
62
1.40
59953708--59953732
12
2.1
12
100
0
50
48
8
0
44
1.32
59956339--59956384
18
2.6
18
100
0
92
15
30
39
15
1.88
59961684--59961716
18
1.9
17
88
11
50
42
12
15
30
1.83
59963449--59963670
40
5.6
40
90
2
333
23
22
25
27
2.00
59971493--59971714
40
5.6
40
89
1
322
24
21
26
28
1.99
59973800--59973834
17
2.0
18
88
5
54
14
31
0
54
1.40
59988839--59988863
10
2.5
10
100
0
50
0
24
12
64
1.27
59988846--59988883
11
3.5
11
85
3
51
0
26
15
57
1.38
59990715--59990747
6
5.5
6
96
0
57
81
0
3
15
0.80
59996135--59996163
13
2.2
13
100
0
58
55
13
0
31
1.39
59997647--59997697
2
26.0
2
88
4
77
47
0
3
49
1.20
60004505--60004564
30
2.0
29
83
3
75
31
21
8
38
1.83
60005524--60005567
22
2.0
22
90
0
70
75
2
2
20
1.03
60008229--60008304
34
2.2
34
83
2
89
32
23
17
26
1.96
60011654--60011905
47
5.3
47
91
1
378
28
30
8
31
1.87
60019703--60019755
23
2.3
24
78
12
58
60
0
30
9
1.28
60020297--60020343
10
4.7
10
94
0
76
61
8
0
29
1.25
60024259--60024465
40
5.2
40
88
2
285
27
28
20
23
1.99
60032358--60032525
40
4.2
40
82
5
180
28
28
19
23
1.98
60035424--60035574
40
3.8
40
77
11
141
26
24
27
21
2.00
60035461--60035590
40
3.2
40
79
2
154
23
23
28
23
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60035423--60035590
80
2.1
80
82
6
207
26
23
27
22
2.00
60037809--60037859
26
1.9
27
84
11
70
19
11
13
54
1.69
60040198--60040383
49
3.8
49
84
2
214
26
19
28
25
1.99
60040260--60040568
48
6.6
48
75
7
213
27
18
25
27
1.98
60040450--60040615
90
1.9
89
82
3
208
27
19
25
26
1.99
60042294--60042356
25
2.5
24
80
7
72
74
1
17
6
1.10
60043523--60043587
29
2.2
29
94
0
112
30
16
27
24
1.97
60050183--60050252
19
3.7
19
77
7
63
72
1
15
10
1.17
60051413--60051477
29
2.2
29
94
0
112
30
16
27
24
1.97
60055377--60055439
28
2.2
29
78
18
71
55
0
11
33
1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378