genome.fa.s1.2.7.7.80.10.50.1000.224.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  224  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66333154--66333254	28	3.5	28	86	6	114	29	26	13	29	1.94
66348017--66348071	23	2.5	22	94	5	94	32	3	29	34	1.75
66358177--66358384	40	5.2	40	84	4	233	25	22	26	25	2.00
66366275--66366482	40	5.2	40	84	4	233	25	22	26	25	2.00
66369010--66369139	40	3.2	40	81	2	163	23	23	28	24	2.00
66376910--66377008	28	3.4	28	86	6	110	30	13	26	30	1.94
66380179--66380308	40	3.2	40	81	2	163	23	23	28	24	2.00
66385527--66385567	20	2.0	20	95	0	73	36	4	21	36	1.75
66391513--66391547	18	2.0	18	88	5	54	28	14	20	37	1.91
66392602--66392678	29	2.7	29	87	0	109	27	27	18	27	1.98
66393827--66394270	38	10.9	38	70	19	229	31	23	14	30	1.94
66393834--66394194	85	4.4	84	74	14	378	31	24	13	30	1.94
66393968--66394029	31	2.0	31	96	0	115	37	25	8	29	1.85
66393827--66394194	123	3.0	120	86	5	492	31	24	13	30	1.94
66394111--66394244	48	2.8	48	88	1	189	30	23	14	30	1.95
66400537--66400720	40	4.6	40	84	5	205	26	26	21	26	1.99
66403470--66403546	38	2.0	38	87	0	109	28	24	18	28	1.98
66403510--66403643	48	2.8	48	83	1	171	30	20	16	32	1.95
66405903--66405950	22	2.2	22	100	0	96	41	20	14	22	1.89
66407479--66407649	93	1.8	93	92	2	290	28	27	21	22	1.99
66407471--66407646	46	3.8	47	79	12	202	29	27	20	22	1.99
66408069--66408128	30	2.0	30	90	0	93	30	25	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66412570--66412601	16	2.0	16	100	0	64	56	0	18	25	1.42
66419578--66419609	16	2.0	16	93	0	55	34	18	0	46	1.49
66419809--66420046	50	4.7	50	78	7	275	28	26	18	26	1.98
66419870--66420051	101	1.8	101	90	0	292	30	26	17	25	1.97
66423011--66423053	15	2.8	16	79	10	54	53	13	18	13	1.73
66426308--66426339	16	2.0	16	93	0	55	34	18	0	46	1.49
66426539--66426934	50	7.9	50	76	5	368	30	24	17	27	1.97
66426539--66426934	101	3.9	100	77	6	298	30	24	17	27	1.97
66426542--66426933	151	2.6	151	89	0	586	30	24	17	27	1.97
66427987--66428148	26	6.3	26	86	3	224	29	21	19	29	1.98
66437686--66437755	27	2.5	28	93	2	115	27	14	28	30	1.95
66437686--66437767	27	3.0	27	84	8	69	28	15	25	30	1.96
66439206--66439367	26	6.3	26	89	3	242	27	23	20	28	1.99
66439196--66439368	78	2.3	74	90	7	274	26	23	21	27	1.99
66439420--66439491	20	3.7	20	90	7	105	33	18	9	38	1.83
66439434--66439472	11	3.7	11	80	13	55	33	20	10	35	1.86
66439434--66439490	9	5.8	10	76	15	57	33	19	8	38	1.82
66439519--66439566	25	1.9	25	86	0	69	27	14	22	35	1.93
66441515--66441555	19	2.1	20	86	4	57	51	14	0	34	1.43
66444462--66444573	42	2.7	42	83	5	129	33	15	24	26	1.95
66453982--66454168	29	6.5	29	91	4	272	27	25	13	33	1.93
66453982--66454168	57	3.2	58	90	4	281	27	25	13	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66458063--66458285	80	2.8	79	78	7	216	39	20	8	30	1.83
66458063--66458267	107	1.9	107	81	2	250	40	20	8	30	1.82
66458063--66458312	27	9.3	27	82	3	229	38	20	8	32	1.84
66458058--66458338	54	5.2	54	75	10	148	37	20	8	33	1.84
66458057--66458285	107	2.1	107	79	3	246	39	20	8	31	1.83
66458263--66458658	27	14.8	27	85	3	462	28	23	8	39	1.84
66458263--66458658	80	4.9	80	87	4	496	28	23	8	39	1.84
66458222--66458671	54	8.4	54	79	6	180	30	22	8	38	1.84
66458263--66458658	107	3.7	107	86	3	541	28	23	8	39	1.84
66459890--66459937	25	1.9	25	86	0	69	33	25	16	25	1.96
66459980--66460040	20	3.0	20	92	0	104	34	11	21	32	1.89
66460090--66460208	24	5.0	24	88	5	170	28	21	22	26	1.99
66460090--66460208	47	2.5	48	89	5	170	28	21	22	26	1.99
66460400--66460462	31	2.1	31	90	3	101	36	15	23	23	1.94
66463243--66463382	26	5.3	26	85	1	145	42	18	7	32	1.77
66463260--66463482	80	2.8	80	78	6	218	39	20	8	30	1.83
66463260--66463508	27	9.3	27	79	4	227	38	20	8	32	1.83
66463260--66463507	80	3.1	80	79	5	216	38	20	8	32	1.83
66463460--66463857	80	4.9	81	86	3	507	28	23	8	40	1.83
66463460--66463857	27	14.8	27	86	2	489	28	23	8	40	1.83
66465093--66465140	25	1.9	25	86	0	69	33	25	16	25	1.96
66465183--66465242	19	3.0	20	87	4	95	35	11	21	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66465293--66465386	47	2.0	49	87	8	140	27	21	23	27	1.99
66465292--66465386	24	4.0	24	87	5	131	28	21	23	27	1.99
66465578--66465641	31	2.1	31	90	0	101	35	15	25	23	1.94
66467094--66467254	42	3.8	42	80	8	175	31	14	23	30	1.95
66467420--66467449	15	1.9	16	93	6	53	33	0	26	40	1.57
66470105--66470183	6	12.8	6	77	15	81	49	15	17	17	1.80
66470105--66470183	31	2.5	31	91	0	122	49	15	17	17	1.80
66470110--66470156	25	1.9	24	95	4	85	46	17	19	17	1.84
66470302--66470359	27	2.1	28	83	3	73	32	20	24	22	1.98
66470290--66470439	67	2.2	67	90	2	239	29	22	29	19	1.98
66470665--66470862	27	7.3	27	76	11	190	25	19	17	37	1.94
66470665--66470853	54	3.5	54	83	5	222	24	20	17	36	1.95
66470669--66470860	81	2.4	81	85	6	239	25	20	17	36	1.94
66470844--66471158	27	11.7	27	79	6	160	30	9	21	38	1.86
66470950--66471158	54	3.9	53	86	4	249	29	10	21	38	1.86
66470893--66471158	81	3.3	80	80	4	221	30	10	21	38	1.86
66473332--66473520	40	4.7	40	79	7	186	25	14	25	34	1.94
66473332--66473523	81	2.4	80	80	7	208	26	14	26	33	1.94
66485276--66485301	13	2.0	13	100	0	52	46	7	15	30	1.74
66491968--66492136	43	4.0	42	76	9	171	27	14	24	33	1.95
66499628--66499792	43	3.8	43	79	3	170	25	18	25	30	1.98
66509527--66509636	40	2.7	39	87	2	139	23	29	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66509511--66509678	40	4.2	40	78	6	124	23	26	23	26	2.00
66511935--66512083	80	1.9	80	81	2	183	22	30	24	22	1.99
66511976--66512083	40	2.7	38	85	8	128	21	29	25	23	1.99
66520798--66520965	40	4.2	40	82	1	185	24	26	22	26	2.00
66527154--66527223	27	2.6	27	90	0	113	44	18	11	25	1.83
66527340--66527373	17	1.9	17	88	5	50	17	47	23	11	1.81
66530122--66530234	40	2.8	40	93	2	183	26	23	27	23	2.00
66530083--66530275	40	4.8	40	83	6	180	24	22	27	25	2.00
66530083--66530301	80	2.7	79	75	12	216	25	22	27	25	2.00
66538174--66538353	40	4.5	40	84	7	197	24	22	27	25	2.00
66538174--66538393	80	2.8	80	78	13	238	24	22	27	25	2.00
66539760--66539822	27	2.3	26	86	5	90	34	23	22	19	1.96
66540585--66540627	22	2.0	22	95	4	79	27	32	27	11	1.92
66547621--66547715	27	3.5	26	82	5	82	38	20	21	20	1.93
66547645--66547735	27	3.4	28	81	6	98	39	23	17	19	1.92
66552528--66552712	67	2.9	64	75	10	178	29	15	29	25	1.96
66556255--66556290	18	2.0	18	88	0	54	44	16	19	19	1.87
66556612--66556691	27	3.0	27	90	0	124	41	18	16	23	1.90
66557351--66557413	32	2.0	32	96	0	117	39	22	19	19	1.92
66559588--66559612	13	1.9	13	100	0	50	40	20	24	16	1.91
66563449--66563660	47	4.4	49	88	3	279	27	30	8	33	1.87
66563449--66563660	96	2.2	96	85	5	277	27	30	8	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66578423--66578456	17	1.9	17	88	5	50	14	32	29	23	1.94
66585068--66585171	29	3.6	29	93	0	163	17	21	27	33	1.95
66596419--66596635	40	5.5	40	92	2	341	25	27	22	24	2.00
66605819--66605934	27	4.3	26	84	7	142	18	21	22	37	1.94
66608470--66608579	24	4.5	24	76	14	82	26	29	13	30	1.94
66610467--66610495	2	14.5	2	100	0	58	51	0	0	48	1.00
66619946--66620010	31	2.1	31	100	0	130	40	21	13	24	1.90
66623241--66623424	40	4.6	39	75	6	138	26	23	27	22	2.00
66623281--66623469	80	2.4	81	77	4	186	23	24	29	22	1.99
66631341--66631524	40	4.6	39	75	6	138	26	23	27	22	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378