genome.fa.s1.2.7.7.80.10.50.1000.302.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  302  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91515193--91515384	47	4.0	47	89	4	287	29	22	21	26	1.99
91515193--91515383	71	2.7	72	90	4	298	29	22	21	26	1.99
91515574--91515637	31	2.1	31	90	0	101	35	15	23	25	1.94
91518334--91518684	27	12.6	27	79	8	310	28	22	8	40	1.83
91518334--91518684	81	4.2	81	78	9	373	28	22	8	40	1.83
91518334--91518684	54	6.3	54	81	8	357	28	22	8	40	1.83
91518514--91518595	38	2.2	38	90	0	128	23	31	7	37	1.82
91518486--91518621	65	2.1	65	84	0	173	26	26	8	38	1.84
91518404--91518667	146	1.8	146	88	1	404	27	23	7	40	1.82
91518432--91518668	119	2.0	119	86	1	332	27	23	7	40	1.82
91518636--91518859	27	8.3	27	73	12	147	38	19	8	33	1.82
91518552--91518711	81	2.0	81	82	2	196	32	20	7	40	1.80
91518904--91518981	27	2.9	27	77	11	88	35	21	20	21	1.96
91520133--91520180	25	1.9	25	86	0	69	37	25	12	25	1.91
91520219--91520295	9	7.9	9	72	16	64	35	9	20	35	1.85
91520213--91520299	20	4.3	20	97	0	165	35	12	19	32	1.89
91520354--91520520	24	7.0	24	91	3	248	29	23	21	25	1.99
91520713--91520776	31	2.1	31	90	0	101	35	15	23	25	1.94
91524516--91524723	40	5.2	40	82	2	202	25	23	25	25	2.00
91524518--91524723	80	2.6	80	83	3	236	25	23	26	24	2.00
91528856--91528973	41	3.1	41	60	28	98	32	17	28	21	1.96
91528824--91528987	71	2.3	71	100	0	328	35	17	28	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91535926--91536043	41	3.1	41	60	28	98	32	17	28	21	1.96
91535894--91536057	71	2.3	71	100	0	328	35	17	28	18	1.94
91541434--91541484	25	2.0	25	100	0	102	23	15	33	27	1.95
91541952--91542059	40	2.7	40	80	5	119	27	24	24	24	2.00
91544759--91544827	35	2.0	35	86	8	97	33	2	18	44	1.65
91545153--91545250	19	5.2	19	85	7	137	37	11	15	35	1.83
91545143--91545220	36	2.2	35	84	15	106	35	11	15	37	1.84
91545623--91545653	2	15.5	2	100	0	62	48	0	0	51	1.00
91550824--91550872	8	6.7	7	82	15	55	85	0	10	4	0.71
91550827--91550866	17	2.4	17	91	0	62	85	0	12	2	0.71
91551727--91552233	44	11.6	43	74	8	337	30	17	24	28	1.97
91551887--91552241	132	2.7	132	93	0	575	31	15	24	28	1.96
91551727--91552241	88	5.9	88	74	9	408	30	17	24	27	1.97
91552203--91553152	206	4.6	206	93	0	1508	31	17	22	28	1.97
91553528--91553578	19	2.9	17	81	13	59	37	9	17	35	1.83
91553538--91553580	19	2.1	21	91	8	72	37	9	18	34	1.83
91556275--91556330	21	2.6	21	80	2	67	50	16	7	26	1.70
91556957--91556996	14	2.9	14	84	0	53	25	7	32	35	1.84
91559120--91559154	17	2.2	15	90	10	52	62	0	2	34	1.10
91559210--91559242	12	2.8	12	100	0	66	75	0	24	0	0.80
91560058--91560192	40	3.4	39	78	9	141	26	18	23	31	1.98
91562075--91562143	33	2.1	33	83	2	86	39	15	4	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91574862--91574945	29	2.9	28	82	3	96	22	20	5	51	1.69
91596305--91596342	14	2.9	13	81	11	51	18	13	10	57	1.63
91598463--91598540	29	2.7	29	85	0	84	23	33	16	26	1.96
91606204--91606304	28	3.5	28	86	6	114	29	26	13	29	1.94
91616566--91616591	12	2.2	12	100	0	52	7	15	53	23	1.67
91626728--91626812	43	2.0	43	81	9	102	30	30	15	23	1.95
91627306--91627382	38	2.0	38	100	0	154	31	32	15	20	1.94
91628631--91628705	38	2.0	38	94	0	132	22	12	36	29	1.90
91631614--91631678	26	2.4	26	78	19	71	38	1	1	58	1.17
91635758--91635789	2	16.0	2	100	0	64	50	0	0	50	1.00
91640852--91640898	20	2.3	20	92	0	76	40	6	19	34	1.77
91640934--91641015	8	9.9	8	70	12	58	50	0	1	48	1.08
91640936--91641015	17	4.8	16	75	4	70	48	0	1	50	1.08
91640948--91641011	34	1.9	33	83	3	83	53	0	1	45	1.10
91643663--91643719	17	3.5	15	88	11	53	35	15	10	38	1.82
91643662--91643719	19	3.2	19	90	9	102	36	15	10	37	1.82
91644104--91644844	206	3.6	206	92	0	1182	29	21	17	31	1.96
91644806--91644970	44	3.8	42	70	9	116	26	23	18	32	1.97
91644822--91644993	88	2.0	88	89	0	263	27	22	18	31	1.97
91645888--91645941	21	2.5	21	82	14	74	3	12	0	83	0.78
91645888--91645964	36	2.1	36	85	4	102	2	14	0	83	0.76
91645911--91645962	11	4.9	11	81	6	63	1	15	0	82	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91645889--91645964	22	3.8	20	78	15	77	2	14	0	82	0.77
91648470--91648569	27	3.7	28	80	9	100	40	19	10	31	1.84
91648572--91648723	54	2.8	54	84	2	180	31	18	7	42	1.79
91648565--91648723	27	5.9	27	81	2	149	30	20	7	40	1.80
91648709--91648893	54	3.4	54	84	3	212	41	20	7	30	1.80
91648700--91648895	81	2.4	81	84	5	245	40	21	7	30	1.81
91648714--91648869	27	5.8	27	88	3	224	41	20	7	30	1.80
91648998--91649071	27	2.7	27	76	12	71	36	20	20	22	1.95
91649011--91649075	27	2.4	27	82	5	78	35	18	24	21	1.96
91650330--91650385	11	5.5	11	71	16	57	35	12	19	32	1.89
91650319--91650385	20	3.3	20	93	0	116	34	11	20	32	1.90
91650319--91650399	40	2.0	39	86	9	110	34	12	19	33	1.89
91650435--91650555	23	5.2	23	94	2	206	29	20	19	29	1.97
91650767--91650830	31	2.1	31	87	0	92	35	14	23	26	1.93
91655691--91655767	19	4.2	19	93	6	140	36	15	10	37	1.82
91655691--91655761	36	2.0	36	100	0	142	36	14	11	38	1.81
91658608--91658659	15	3.2	15	73	19	50	55	1	1	40	1.22
91664651--91664697	18	2.8	17	90	6	69	48	0	0	51	1.00
91665900--91665934	13	2.8	13	95	4	63	54	0	22	22	1.45
91666454--91666533	39	2.1	39	95	0	142	25	25	13	36	1.92
91675537--91675594	30	1.9	30	85	0	80	43	8	20	27	1.81
91676012--91676187	46	3.8	46	78	12	198	20	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91676009--91676180	93	1.8	93	94	0	308	20	21	29	27	1.98
91682958--91683002	18	2.5	18	100	0	90	35	8	6	48	1.61
91699559--91699729	43	4.0	43	80	3	166	32	25	13	28	1.93
91716544--91716644	40	2.5	40	83	8	114	3	22	2	70	1.18
91716621--91716669	19	2.6	19	78	15	57	2	20	2	75	1.00
91720378--91720492	50	2.3	49	83	5	140	27	23	22	26	2.00
91720376--91720492	25	4.7	25	76	4	103	28	23	23	25	1.99
91723938--91724101	43	3.9	43	76	13	153	22	16	26	34	1.95
91726093--91726124	16	2.0	16	100	0	64	43	12	12	31	1.80
91731529--91731699	43	4.0	43	79	8	179	23	15	26	33	1.95
91737190--91737243	22	2.5	20	77	11	54	12	29	27	29	1.94
91738948--91739172	60	3.8	60	79	3	238	13	30	20	35	1.91
91739105--91739191	40	2.2	40	83	4	104	10	34	20	34	1.87
91739105--91739191	20	4.4	19	76	11	59	10	34	20	34	1.87
91738943--91739171	120	1.9	120	81	1	280	13	30	20	35	1.91
91748564--91748595	2	16.0	2	100	0	64	50	0	0	50	1.00
91753664--91753727	24	2.7	24	80	0	65	21	15	35	26	1.94
91755073--91755192	60	2.0	60	98	0	231	49	10	17	23	1.77
91762029--91762128	53	1.9	52	87	6	148	27	13	26	34	1.93
91762273--91762356	41	2.0	41	100	0	168	39	7	27	26	1.82
91762277--91762369	41	2.3	41	92	3	152	40	8	25	24	1.83
91763145--91763203	30	1.9	31	93	3	102	18	35	30	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91765966--91766005	18	2.2	18	95	0	71	30	7	17	45	1.76
91766858--91767060	40	5.1	40	87	2	275	22	21	29	27	1.99
91774932--91775132	40	5.1	40	86	4	257	22	20	28	27	1.99
91774935--91775136	39	5.2	39	86	4	230	23	20	28	27	1.99
91781903--91782032	40	3.2	40	82	4	165	22	23	29	25	1.99
91784775--91784808	14	2.5	13	86	9	50	52	11	17	17	1.73
91785301--91785338	19	2.0	19	94	0	67	39	0	18	42	1.50
91787948--91787996	25	2.0	25	84	8	64	36	10	22	30	1.87
91790875--91790923	23	2.1	23	96	0	89	63	8	10	18	1.50
91792024--91792055	16	2.1	16	94	5	57	84	6	6	3	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378