genome.fa.s1.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  159  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46200893--46201052	49	3.3	49	96	1	288	32	6	29	31	1.84
46202871--46203102	40	5.8	40	94	1	378	23	23	27	25	2.00
46215273--46215311	18	2.2	18	100	0	78	17	5	12	64	1.46
46215902--46216171	46	5.8	46	77	11	203	27	19	30	22	1.98
46215907--46216171	140	1.9	140	82	7	333	27	19	30	23	1.98
46217246--46217288	22	2.0	22	86	13	63	16	39	25	18	1.91
46219004--46219034	3	10.3	3	100	0	62	67	0	0	32	0.91
46221620--46221658	13	3.0	13	76	0	51	38	7	17	35	1.79
46224112--46224145	17	2.1	17	88	5	52	44	2	11	41	1.56
46229264--46229493	123	1.9	123	99	0	451	29	10	25	34	1.89
46229546--46229692	40	3.7	40	83	0	170	25	21	26	25	2.00
46229579--46229708	40	3.3	38	80	6	143	23	20	28	27	1.99
46236462--46236691	123	1.9	123	100	0	460	29	10	26	34	1.89
46236593--46236775	98	1.9	98	90	0	294	26	11	26	35	1.90
46236744--46236946	79	2.6	79	83	3	221	24	21	26	27	1.99
46236744--46236946	40	5.1	40	85	1	228	24	21	26	27	1.99
46240271--46240326	19	2.9	19	79	12	69	28	0	3	67	1.07
46251619--46251687	36	1.9	36	82	11	88	34	5	2	56	1.38
46267603--46267654	26	2.0	26	85	7	70	19	0	7	73	1.07
46273880--46273936	30	1.9	30	88	0	87	26	15	19	38	1.92
46284734--46284762	15	1.9	15	100	0	58	34	27	6	31	1.83
46289231--46289291	30	2.0	30	100	0	122	39	19	3	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46289535--46289599	27	2.4	27	80	7	80	26	7	0	66	1.19
46291421--46291552	29	4.6	29	83	1	149	25	32	16	25	1.96
46298767--46298898	29	4.6	29	84	1	149	26	32	15	25	1.96
46308331--46308388	30	1.9	30	89	0	89	32	13	24	29	1.94
46308729--46308996	49	5.7	48	75	13	227	29	22	25	22	1.99
46310274--46310355	42	1.9	42	82	7	103	34	26	18	20	1.96
46310295--46310404	44	2.6	42	82	7	123	32	25	21	20	1.97
46312440--46312480	16	2.3	18	84	12	50	78	2	14	4	1.03
46315699--46315756	30	1.9	30	96	0	107	24	39	25	10	1.87
46317893--46318069	40	4.4	40	81	4	207	27	28	21	23	1.99
46317893--46318069	80	2.2	79	87	5	241	27	28	21	23	1.99
46319464--46319648	40	4.7	40	86	5	234	26	27	21	24	1.99
46319431--46319614	79	2.3	80	81	10	227	26	27	20	26	1.99
46319464--46319648	79	2.3	80	82	8	216	26	27	21	24	1.99
46331338--46331396	30	2.0	30	96	0	109	28	30	25	15	1.96
46331346--46331409	30	2.1	30	91	0	101	34	31	20	14	1.92
46336058--46336131	30	2.5	30	86	4	96	44	2	8	44	1.47
46336612--46336644	3	11.0	3	100	0	66	66	0	0	33	0.92
46337269--46337320	23	2.3	24	77	12	65	51	0	0	48	1.00
46337895--46337989	31	3.1	30	71	14	79	38	9	8	43	1.68
46340277--46340324	2	24.0	2	100	0	96	50	0	0	50	1.00
46343851--46344006	49	3.2	47	75	5	141	26	26	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46343871--46344054	49	3.8	49	78	6	187	25	26	20	28	1.99
46343877--46344061	98	1.9	97	84	5	248	23	27	20	29	1.99
46343875--46344109	49	4.9	45	76	12	159	23	27	19	29	1.98
46344028--46344149	46	2.7	45	83	10	142	24	30	16	28	1.96
46358220--46358328	40	2.7	40	94	2	184	22	28	22	25	1.99
46358223--46358358	40	3.4	40	87	4	123	25	27	22	24	2.00
46366224--46366362	40	3.5	40	88	3	183	24	25	23	27	2.00
46378335--46378404	5	12.0	6	72	24	53	48	1	1	48	1.19
46378335--46378404	11	6.5	11	68	28	53	48	1	1	48	1.19
46378336--46378411	17	4.4	16	81	14	89	48	1	2	47	1.24
46382189--46382221	2	16.5	2	100	0	66	51	0	0	48	1.00
46382285--46382386	29	3.5	29	97	0	186	28	30	12	28	1.93
46382256--46382386	58	2.3	58	86	5	176	27	30	14	27	1.95
46387330--46387360	2	15.5	2	100	0	62	51	0	0	48	1.00
46387394--46387525	29	4.6	29	81	5	90	25	32	15	25	1.96
46391470--46391507	3	12.7	3	100	0	76	31	0	0	68	0.90
46402157--46402197	20	2.0	20	100	0	82	24	29	14	31	1.95
46405115--46405163	25	2.0	25	95	0	89	48	14	20	16	1.80
46420382--46420556	46	3.8	44	77	10	163	22	20	28	29	1.98
46426269--46426317	17	2.8	18	74	22	50	24	18	22	34	1.96
46427139--46427305	40	4.2	40	79	6	169	25	21	27	25	1.99
46434273--46434321	17	2.8	18	74	22	50	24	18	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46435143--46435309	40	4.2	40	79	6	169	25	21	27	25	1.99
46438052--46438092	13	3.2	13	82	0	55	17	31	29	21	1.96
46463218--46463435	40	5.6	39	83	6	205	26	22	27	23	2.00
46463254--46463405	40	3.9	38	88	7	216	26	22	27	23	1.99
46463255--46463435	78	2.3	80	84	3	242	25	22	28	23	2.00
46463254--46463475	118	1.9	118	80	3	259	23	23	28	23	1.99
46468203--46468344	40	3.5	40	83	1	124	27	23	26	22	1.99
46468242--46468370	40	3.2	39	84	6	152	24	22	27	25	2.00
46476211--46476352	40	3.5	40	83	1	124	27	23	26	22	1.99
46476250--46476378	40	3.2	39	84	6	152	24	22	27	25	2.00
46478434--46478465	12	2.7	12	90	0	55	25	46	18	9	1.79
46487396--46487439	22	2.0	21	82	4	52	54	9	2	34	1.44
46498465--46498500	15	2.3	16	90	4	56	19	0	2	77	0.88
46498588--46498976	210	1.9	210	97	0	733	20	14	17	48	1.81
46501234--46501307	29	2.6	29	95	0	139	27	14	31	27	1.95
46501291--46501366	29	2.6	29	78	0	89	22	19	35	22	1.96
46501234--46501366	58	2.3	58	80	2	133	24	17	33	24	1.96
46509117--46509190	29	2.6	29	95	0	139	27	14	31	27	1.95
46509174--46509249	29	2.6	29	78	0	89	22	19	35	22	1.96
46509117--46509249	58	2.3	58	80	2	133	24	17	33	24	1.96
46513550--46513584	17	2.1	17	100	0	70	22	17	37	22	1.94
46525568--46525632	6	10.5	6	73	12	51	13	6	1	78	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46530732--46530898	40	4.2	40	81	2	176	24	27	22	25	2.00
46530748--46530898	80	1.9	79	83	6	198	23	27	22	25	2.00
46532093--46532198	55	1.9	55	84	7	144	30	16	18	34	1.93
46538729--46538895	40	4.2	40	81	2	176	24	27	22	25	2.00
46538745--46538895	80	1.9	79	83	6	198	23	27	22	25	2.00
46545823--46545989	40	4.2	40	81	2	176	24	27	22	25	2.00
46545839--46545989	80	1.9	79	83	6	198	23	27	22	25	2.00
46547177--46547291	55	2.1	55	82	8	135	26	14	17	40	1.88
46553821--46553987	40	4.2	40	81	2	176	24	27	22	25	2.00
46553837--46553987	80	1.9	79	83	6	198	23	27	22	25	2.00
46555181--46555288	56	1.9	56	83	7	139	29	16	18	35	1.93
46584176--46584238	33	1.9	33	93	0	108	50	17	3	28	1.61
46597490--46597547	28	2.1	28	100	0	116	58	24	0	17	1.38
46599130--46599214	35	2.4	37	81	15	106	65	3	1	29	1.16
46602213--46602369	43	3.7	43	74	9	151	24	17	28	29	1.97
46602822--46602847	2	13.0	2	100	0	52	50	0	0	50	1.00
46604493--46604538	22	2.1	22	95	0	83	34	21	23	19	1.96
46609956--46609993	18	2.1	18	90	0	58	76	0	10	13	1.02
46610589--46610639	19	2.7	20	82	14	63	17	35	27	19	1.94
46614871--46614928	30	1.9	30	89	6	91	17	29	32	20	1.95
46615361--46615398	20	1.9	20	94	0	67	36	5	7	50	1.54
46617671--46617710	21	1.9	21	94	0	71	12	15	15	57	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46623253--46623316	32	2.1	32	91	5	105	59	0	0	40	0.97
46623362--46623447	16	5.6	16	68	13	54	45	2	0	52	1.13
46623319--46623383	21	2.9	23	72	21	66	46	0	1	52	1.10
46623341--46623413	26	2.8	27	75	10	80	46	0	0	53	1.00
46623318--46623457	61	2.3	58	90	4	208	45	1	0	52	1.14
46641378--46641412	17	2.1	16	89	5	52	20	22	31	25	1.98
46643250--46643305	6	9.5	6	88	3	87	80	1	0	17	0.80
46644978--46645015	8	4.8	8	81	12	51	73	0	10	15	1.09
46644970--46645038	24	2.7	24	84	8	84	72	0	8	18	1.10
46644974--46645030	12	4.9	12	74	19	50	71	0	8	19	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378