genome.fa.s1.2.7.7.80.10.50.1000.360.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  360  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107922032--107922117	27	3.3	27	72	18	74	65	1	3	30	1.17
107922398--107922517	20	5.3	22	73	19	88	55	28	2	13	1.51
107922409--107922457	25	2.0	25	91	0	80	53	26	2	18	1.56
107922437--107922478	19	2.2	19	91	4	66	64	26	0	9	1.24
107922442--107922507	19	3.2	20	79	12	55	60	27	1	10	1.38
107923406--107923432	14	1.9	14	100	0	54	74	0	0	25	0.83
107924394--107924502	26	4.2	26	91	1	166	33	5	22	37	1.78
107924795--107924822	13	2.2	13	100	0	56	35	0	39	25	1.56
107926278--107926552	136	2.0	137	96	0	507	25	18	24	31	1.98
107929315--107929341	5	5.4	5	100	0	54	40	0	0	59	0.98
107929601--107929645	21	2.2	20	88	4	63	44	2	17	35	1.62
107937901--107937934	17	1.9	18	88	5	52	50	32	0	17	1.47
107940777--107940810	2	17.0	2	100	0	68	50	50	0	0	1.00
107942373--107942512	3	46.7	3	75	13	110	65	5	2	26	1.27
107943865--107943975	47	2.4	47	81	6	145	35	24	16	24	1.95
107946447--107946505	30	1.9	30	82	3	73	27	22	0	50	1.49
107946712--107946854	62	2.3	62	87	0	196	25	24	23	26	2.00
107947427--107947453	12	2.2	12	100	0	54	59	0	40	0	0.98
107947722--107947771	26	2.0	27	84	11	70	42	4	4	50	1.40
107948116--107948163	18	2.7	18	81	9	62	54	0	4	41	1.20
107948140--107948200	31	1.9	32	83	9	81	50	1	1	45	1.21
107948179--107948217	16	2.5	16	83	4	53	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107948432--107948488	26	2.2	25	84	3	69	31	1	1	64	1.13
107948478--107948511	18	1.9	17	88	5	50	32	0	5	61	1.20
107955296--107955328	16	2.0	17	88	5	50	36	0	0	63	0.95
107957280--107957339	32	1.9	32	82	3	77	41	10	8	40	1.69
107958121--107958159	20	2.0	19	90	5	60	33	7	0	58	1.26
107958105--107958212	55	2.0	55	81	7	130	30	3	1	63	1.22
107958197--107958237	21	2.0	21	90	0	64	21	14	0	63	1.30
107958300--107958381	29	2.8	28	78	12	85	34	1	4	59	1.26
107958300--107958391	10	9.4	9	72	20	53	34	2	4	58	1.30
107958300--107958382	20	4.2	20	75	13	68	33	1	4	60	1.26
107958300--107958391	29	3.1	27	71	22	71	34	2	4	58	1.30
107958661--107958719	31	1.9	31	86	3	84	66	6	0	27	1.17
107959025--107959061	14	2.7	15	88	12	53	32	2	0	64	1.07
107971589--107971629	3	14.0	3	94	5	75	34	0	0	65	0.93
107972764--107972802	14	2.8	14	88	7	53	41	33	7	17	1.79
107975698--107975733	17	2.1	18	89	5	56	33	0	0	66	0.92
107978150--107978212	18	3.3	20	71	13	60	57	4	1	36	1.30
107978309--107978336	1	28.0	1	100	0	56	100	0	0	0	0.00
107984960--107985006	16	2.9	16	78	9	51	38	14	14	31	1.87
107993351--107993380	3	10.0	3	92	0	51	63	0	36	0	0.95
107993659--107993696	17	2.2	17	90	9	60	28	0	2	68	1.03
107994272--107994304	17	1.9	17	88	11	50	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108003372--108003431	21	2.8	22	90	7	97	28	5	35	31	1.79
108006786--108006848	30	2.1	30	91	5	101	25	4	11	58	1.51
108007316--108007367	2	26.0	2	100	0	104	50	0	0	50	1.00
108008489--108008576	29	2.8	32	79	15	110	43	20	12	23	1.86
108008685--108008727	21	2.0	21	100	0	86	39	18	4	37	1.72
108011006--108011045	2	20.0	2	100	0	80	50	0	0	50	1.00
108011297--108011332	14	2.6	14	91	4	56	50	0	11	38	1.38
108012701--108012749	22	2.2	22	81	0	53	28	6	4	61	1.38
108015942--108015977	13	2.8	14	84	16	51	27	25	0	47	1.52
108015929--108015969	18	2.2	19	87	12	59	29	24	0	46	1.53
108016092--108016226	39	3.4	38	73	8	92	28	28	20	22	1.98
108016466--108016504	18	2.1	19	90	4	62	48	10	0	41	1.37
108017822--108017874	5	10.0	5	80	11	61	56	1	0	41	1.10
108017821--108017876	12	4.5	12	81	16	69	55	1	0	42	1.10
108018218--108018297	40	2.0	40	100	0	160	35	5	7	52	1.51
108041357--108041387	2	15.5	2	93	0	53	45	0	51	3	1.17
108043574--108043608	18	1.9	18	88	0	52	57	0	0	42	0.99
108046058--108046099	2	21.0	2	100	0	84	50	0	0	50	1.00
108047735--108047768	15	2.4	14	95	5	59	5	0	29	64	1.17
108047764--108047799	17	2.1	17	90	10	56	0	8	2	88	0.59
108047764--108047797	12	2.9	11	91	8	50	0	8	2	88	0.62
108048613--108048674	30	2.1	30	90	6	99	41	29	9	19	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108048770--108048803	13	2.6	13	90	0	50	52	2	14	29	1.56
108048821--108049350	72	6.8	73	75	13	420	32	19	18	30	1.95
108049018--108049493	164	2.9	167	90	4	741	31	20	18	28	1.97
108049190--108049350	74	2.1	75	85	8	222	31	21	18	28	1.97
108049266--108049439	90	2.0	87	87	6	251	32	20	20	27	1.97
108049354--108049493	74	1.9	75	89	3	219	27	23	20	28	1.99
108049558--108049722	71	2.3	71	87	6	244	41	21	15	22	1.90
108049722--108049984	70	3.8	70	84	5	345	38	22	14	25	1.91
108049561--108050151	262	2.3	256	94	2	1031	36	22	14	25	1.93
108049722--108049984	141	1.9	140	89	2	411	38	22	14	25	1.91
108058906--108058947	19	2.2	20	86	4	59	26	19	7	47	1.74
108066806--108066971	66	2.5	66	84	1	219	31	17	10	40	1.84
108067330--108067479	42	3.5	42	72	7	149	34	18	22	24	1.96
108067284--108067557	86	3.2	86	86	4	356	35	19	22	22	1.96
108067286--108067422	44	3.2	44	70	8	136	35	19	21	22	1.96
108067284--108067600	86	3.7	85	85	3	316	35	19	23	22	1.96
108069312--108069345	17	2.0	17	88	11	52	20	8	5	64	1.43
108069473--108069518	3	15.3	3	95	0	83	32	2	0	65	1.05
108069889--108069930	3	14.3	3	80	5	50	30	4	2	61	1.29
108069893--108069933	14	2.9	15	89	7	59	31	4	2	60	1.30
108072038--108072151	53	2.1	53	81	13	128	45	3	7	42	1.50
108072889--108072913	6	4.2	6	100	0	50	16	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108073129--108073158	7	4.4	7	95	4	53	60	0	40	0	0.97
108077165--108077271	56	2.0	54	85	7	146	21	18	22	37	1.94
108086317--108086359	20	2.2	20	100	0	86	30	13	9	46	1.75
108094825--108094853	4	7.2	4	100	0	58	27	0	0	72	0.85
108095073--108095108	18	2.0	18	100	0	72	44	0	5	50	1.25
108099444--108099548	51	2.1	51	100	0	210	45	15	20	19	1.85
108121525--108121558	10	3.3	10	91	4	50	70	0	8	20	1.13
108123658--108123690	16	2.1	16	94	0	57	51	18	21	9	1.73
108124545--108124697	19	8.2	19	89	7	233	36	15	8	39	1.78
108124534--108124697	36	4.4	37	85	8	199	37	15	9	37	1.79
108124545--108124697	55	2.7	55	93	2	261	36	15	8	39	1.78
108125698--108125854	79	2.0	79	85	0	215	44	15	9	29	1.79
108129112--108129144	16	2.1	16	88	11	50	48	0	3	48	1.17
108130935--108131007	36	2.0	36	100	0	146	42	16	19	21	1.89
108143718--108143888	75	2.4	74	82	7	208	33	22	11	32	1.89
108143722--108143888	35	4.6	35	83	7	183	34	23	10	31	1.89
108145481--108145550	32	2.1	33	87	10	99	65	12	10	11	1.47
108148831--108149016	46	4.0	46	87	2	223	22	23	13	39	1.90
108149999--108150084	39	2.1	41	85	4	113	66	9	1	23	1.28
108150100--108150144	23	2.0	23	86	0	63	64	0	2	33	1.06
108172088--108173483	466	3.0	466	98	0	2675	31	13	19	35	1.91
108178942--108179017	38	2.0	38	94	0	134	25	22	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108180267--108180325	31	1.9	31	89	3	84	52	13	10	23	1.71
108183397--108183497	43	2.3	43	96	0	184	28	28	18	23	1.98
108185372--108185396	13	1.9	13	100	0	50	32	12	32	24	1.91
108189934--108190116	90	2.0	91	90	4	287	27	15	20	37	1.92
108192092--108192209	59	2.0	59	100	0	236	37	10	13	38	1.79
108198678--108198810	59	2.2	60	84	6	180	37	16	10	35	1.83
108199578--108199623	23	2.0	23	100	0	92	13	21	21	43	1.86
108199884--108199910	2	13.5	2	100	0	54	48	51	0	0	1.00
108204755--108204802	15	3.3	15	74	11	55	52	0	2	45	1.12
108206163--108206222	18	3.2	19	83	11	79	58	0	1	40	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378