Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  140  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39929235--39929302
29
2.2
31
79
7
77
42
4
0
52
1.21
39948347--39948422
38
2.0
38
94
0
134
18
21
15
44
1.86
39953774--39953977
43
4.7
43
95
1
363
25
19
31
23
1.98
39954383--39954428
21
2.2
21
84
0
56
2
50
19
28
1.60
39960066--39960282
9
23.6
9
73
10
134
38
0
12
47
1.48
39960066--39960282
18
12.3
18
75
10
162
38
0
12
47
1.48
39960042--39960313
123
2.3
120
85
6
351
38
1
12
47
1.49
39960387--39960442
15
3.8
15
78
21
73
53
0
0
46
1.00
39960619--39960686
24
2.8
24
86
8
102
45
7
19
27
1.76
39960975--39961016
21
2.0
21
86
9
59
66
0
0
33
0.92
39961073--39961107
16
2.2
16
100
0
70
57
0
11
31
1.34
39960774--39962069
370
3.5
371
96
2
2341
39
10
14
35
1.81
39962507--39963780
635
2.0
635
98
0
2485
42
18
13
25
1.87
39965959--39965993
15
2.3
15
95
0
61
34
8
0
57
1.29
39966410--39966459
18
2.7
18
84
9
66
48
2
4
46
1.32
39966754--39967025
41
6.6
41
89
2
377
27
28
19
24
1.98
39966998--39967090
41
2.3
40
83
5
107
16
19
22
41
1.89
39968694--39968729
18
2.0
18
100
0
72
11
22
5
61
1.50
39975801--39975860
27
2.3
26
85
2
75
35
20
23
21
1.96
39975857--39975890
2
17.0
2
100
0
68
50
0
0
50
1.00
39975937--39975988
27
2.0
26
84
3
68
34
21
26
17
1.95
39977993--39978039
22
2.1
22
84
11
60
42
12
4
40
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39982650--39982712
27
2.3
27
83
8
74
30
26
15
26
1.96
39983270--39983306
15
2.4
16
82
13
51
56
0
10
32
1.34
39990768--39990943
48
3.6
47
76
8
156
23
29
18
27
1.98
39992370--39992410
21
2.0
21
85
9
57
14
34
29
21
1.93
40003509--40003543
18
2.0
17
88
5
52
40
11
34
14
1.82
40010203--40010251
2
24.5
2
100
0
98
0
48
0
51
1.00
40029632--40029673
16
2.6
16
78
14
50
33
2
7
57
1.39
40030073--40030120
20
2.3
20
92
3
78
60
6
0
33
1.22
40030546--40030578
2
16.5
2
100
0
66
48
0
0
51
1.00
40032515--40032572
29
2.0
29
86
0
80
17
20
34
27
1.95
40035842--40035913
35
2.0
36
84
7
94
8
15
16
59
1.59
40035854--40036136
5
56.4
5
71
4
59
9
18
15
56
1.65
40035918--40036066
50
3.0
49
82
3
138
13
18
12
56
1.67
40035977--40036075
50
2.0
50
89
0
153
12
18
11
58
1.62
40035978--40036091
50
2.3
50
85
0
147
11
17
13
57
1.64
40036067--40036136
25
2.8
25
80
4
88
5
24
18
51
1.68
40037525--40037581
10
5.5
10
80
15
53
33
1
5
59
1.30
40047662--40047721
29
2.0
29
84
9
77
61
1
16
20
1.42
40048828--40048871
23
2.0
23
86
13
65
13
29
25
31
1.94
40048826--40048922
24
4.1
25
73
11
71
17
23
20
38
1.93
40062709--40062935
44
4.9
44
77
12
179
27
18
29
24
1.98
40065941--40066116
46
3.8
46
81
10
232
20
21
29
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40065937--40066108
93
1.8
93
96
0
317
20
22
30
27
1.98
40069063--40069131
15
4.6
15
83
0
84
11
17
13
57
1.64
40069054--40069141
30
3.0
30
81
8
99
10
17
15
56
1.66
40071519--40071694
46
3.8
46
81
10
232
20
21
29
28
1.98
40071515--40071686
93
1.8
93
96
0
317
20
22
30
27
1.98
40086272--40086316
21
2.1
21
95
0
81
44
20
22
13
1.85
40086337--40086381
20
2.3
20
82
14
58
53
4
8
33
1.52
40088695--40088954
134
1.9
134
80
1
297
31
13
13
40
1.84
40089273--40089512
120
2.0
120
100
0
480
23
6
21
48
1.74
40089645--40089697
13
4.1
12
76
13
52
32
7
24
35
1.84
40090474--40090513
20
2.0
20
85
9
55
32
7
0
60
1.25
40090553--40090602
19
2.7
19
81
12
59
28
6
2
64
1.28
40090589--40090653
18
3.5
19
77
10
55
30
4
1
63
1.24
40091338--40091420
10
8.4
10
67
20
50
65
2
3
28
1.22
40091327--40091384
31
1.9
30
89
6
91
60
0
6
32
1.23
40091367--40091413
20
2.3
20
86
13
62
68
4
0
27
1.08
40092063--40092104
19
2.2
20
91
4
68
35
0
2
61
1.09
40092126--40092187
26
2.4
26
78
5
63
24
6
1
67
1.23
40097447--40097494
26
1.9
26
87
8
73
62
2
0
35
1.07
40097947--40098991
523
2.0
523
99
0
2072
40
10
15
32
1.82
40099385--40099429
20
2.2
20
88
0
63
48
2
13
35
1.54
40106474--40106736
48
5.6
48
76
5
205
30
18
26
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40109885--40110058
69
2.5
68
84
2
215
21
21
22
33
1.97
40109949--40110093
69
2.1
69
81
2
166
23
24
24
27
2.00
40118394--40118803
69
6.0
69
73
7
244
32
23
22
20
1.98
40120852--40120919
21
3.2
21
65
8
57
30
23
11
33
1.91
40120843--40120929
42
2.0
43
93
2
149
33
26
9
31
1.88
40126119--40126173
21
2.6
21
76
2
56
50
0
7
41
1.30
40126959--40127015
15
3.9
15
88
2
89
35
0
12
52
1.39
40127399--40127450
21
2.3
23
77
12
63
13
26
26
32
1.94
40127411--40127473
21
3.0
21
78
0
63
15
23
23
36
1.94
40134987--40135054
30
2.3
30
82
5
75
47
19
10
23
1.80
40135089--40135129
21
2.0
21
90
0
64
26
17
26
29
1.97
40139260--40139345
30
3.0
29
88
5
86
26
23
15
34
1.94
40139272--40139374
30
3.5
30
91
1
154
26
26
14
33
1.95
40147175--40147263
30
3.1
29
88
4
92
28
22
14
34
1.93
40147187--40147289
30
3.5
30
93
1
163
27
26
13
33
1.94
40150699--40150751
26
2.0
26
96
0
97
32
13
20
33
1.91
40151660--40151708
21
2.3
21
86
13
66
36
2
2
59
1.21
40151677--40151787
59
1.9
58
86
1
159
45
0
2
52
1.15
40155050--40155075
7
3.7
7
100
0
52
11
0
0
88
0.52
40158172--40158240
13
5.3
13
85
0
102
42
24
7
26
1.80
40158172--40158242
26
2.7
26
95
0
124
42
23
7
26
1.80
40158505--40158603
51
1.9
51
87
0
144
31
16
17
35
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40170925--40170984
30
2.0
30
93
0
102
58
11
0
30
1.34
40170965--40170993
12
2.5
12
94
5
51
68
0
0
31
0.89
40174097--40174538
127
3.5
125
87
2
580
26
15
19
38
1.92
40175028--40175103
40
1.9
40
97
0
143
40
11
15
31
1.84
40185765--40185887
64
1.9
64
89
0
192
33
16
12
38
1.85
40185961--40186715
177
4.3
177
91
1
1176
31
20
22
25
1.98
40186667--40186950
84
3.4
83
86
1
388
36
20
21
20
1.95
40189184--40189619
127
3.5
127
88
0
599
26
14
20
38
1.91
40190649--40190712
31
2.1
31
90
0
101
25
23
15
35
1.94
40190897--40191097
25
8.2
25
89
8
290
27
24
19
28
1.99
40190897--40191097
48
4.1
48
91
5
305
27
24
19
28
1.99
40190897--40191097
73
2.7
73
88
8
293
27
24
19
28
1.99
40191144--40191214
20
3.5
20
96
0
124
30
21
12
35
1.91
40191149--40191203
11
5.4
11
70
16
55
30
20
12
36
1.90
40192434--40192511
27
2.9
27
79
11
88
21
19
21
37
1.95
40192549--40192767
27
8.0
27
77
7
183
32
9
17
40
1.81
40192537--40192766
81
2.8
81
75
12
218
32
9
17
40
1.81
40192557--40192800
27
9.0
27
77
7
147
34
8
18
39
1.80
40192733--40192946
54
4.0
54
78
7
137
40
7
21
30
1.81
40192640--40192792
81
1.9
81
80
2
182
33
7
20
38
1.80
40192760--40193047
27
10.7
27
86
3
400
39
9
22
28
1.85
40194300--40194324
13
1.9
13
100
0
50
24
24
12
40
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40196059--40196099
15
2.8
15
88
3
66
21
4
12
60
1.50
40196389--40196646
88
3.0
87
78
7
274
34
14
11
39
1.83
40196423--40196781
79
4.3
85
79
8
286
32
16
12
38
1.86
40196576--40196805
79
2.9
80
85
2
304
33
15
11
39
1.84
40196899--40197064
84
2.0
85
81
8
196
31
10
9
48
1.69
40210885--40211237
180
2.0
179
90
0
562
32
18
9
38
1.83
40211786--40212075
151
1.9
151
87
0
418
29
25
18
26
1.98
40211794--40212122
50
6.5
50
80
2
318
31
25
17
26
1.97
40212485--40212562
28
2.8
28
90
3
122
37
20
5
37
1.75
40215791--40215835
15
3.0
15
100
0
90
46
13
6
33
1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378