genome.fa.s1.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  145  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41495237--41495274	2	19.0	2	100	0	76	50	0	0	50	1.00
41495373--41495592	45	5.0	44	78	6	214	26	15	26	31	1.95
41500848--41500967	60	2.0	60	100	0	240	40	21	10	28	1.85
41504524--41504558	18	1.9	18	88	11	54	51	14	0	34	1.42
41506033--41506140	42	2.6	42	79	5	103	28	24	15	31	1.96
41514289--41514496	40	5.2	39	82	3	202	25	25	23	25	2.00
41514289--41514495	80	2.6	80	82	3	238	25	26	23	25	2.00
41517927--41518102	40	4.5	40	93	4	288	24	28	22	23	1.99
41517927--41518102	79	2.2	79	92	5	286	24	28	22	23	1.99
41525819--41525956	40	3.5	40	94	3	226	23	28	23	23	1.99
41530823--41531007	79	2.3	81	81	7	218	24	27	23	24	2.00
41530823--41531007	40	4.7	40	78	6	180	24	27	23	24	2.00
41534214--41534282	28	2.5	28	92	2	113	18	8	27	44	1.79
41534920--41535070	54	2.8	54	92	0	248	31	7	21	40	1.80
41534917--41535077	81	2.0	81	87	0	232	32	8	20	39	1.82
41534917--41535070	27	5.7	27	83	0	209	31	7	20	39	1.81
41534928--41535097	81	2.1	81	78	2	189	33	7	20	38	1.81
41535065--41535305	27	8.9	28	84	8	295	40	9	22	27	1.84
41535064--41535313	54	4.6	54	90	2	385	40	8	22	28	1.84
41535063--41535313	81	3.1	81	83	8	357	39	8	22	28	1.84
41546926--41547101	50	3.5	49	85	3	201	26	17	25	30	1.97
41552688--41552758	27	2.6	27	75	4	72	36	26	7	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41552742--41552865	27	4.6	27	85	2	169	41	20	7	30	1.79
41552726--41552865	54	2.6	53	85	6	138	40	21	7	30	1.80
41552742--41552894	81	1.9	81	86	5	220	40	19	9	30	1.83
41552848--41552909	27	2.3	27	91	0	97	40	16	16	27	1.89
41552742--41552892	54	2.8	54	85	4	162	41	19	9	29	1.83
41554186--41554210	9	2.8	9	100	0	50	8	0	0	92	0.40
41554186--41554214	10	3.0	10	95	5	51	10	0	0	89	0.48
41556054--41556272	40	5.5	40	93	2	354	22	22	28	26	1.99
41558451--41558660	40	5.2	40	87	2	305	25	24	28	21	1.99
41566586--41566795	40	5.2	40	87	2	305	25	24	28	21	1.99
41571790--41571842	23	2.2	26	83	10	67	35	9	26	28	1.87
41574062--41574093	16	2.0	16	100	0	64	12	25	25	37	1.91
41581351--41581477	43	3.0	43	81	5	159	25	14	25	33	1.95
41583907--41583976	27	2.5	28	83	2	97	28	28	15	27	1.96
41587769--41587877	44	2.5	44	95	0	191	31	11	23	33	1.91
41597643--41597817	46	3.8	46	75	4	172	29	30	19	20	1.97
41612453--41612597	27	5.4	27	79	6	141	37	19	17	24	1.93
41612452--41612597	54	2.7	54	85	0	193	38	19	17	24	1.93
41617470--41617559	27	3.3	27	75	9	94	38	13	20	27	1.90
41621879--41622097	45	5.0	44	87	7	295	24	21	30	24	1.99
41621878--41622097	88	2.5	88	88	6	322	24	21	30	24	1.99
41624553--41624598	23	2.0	23	83	4	58	26	15	30	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41636932--41637115	40	4.6	40	82	4	174	28	22	26	23	1.99
41645038--41645138	39	2.5	40	85	1	132	30	22	24	21	1.99
41645038--41645220	40	4.6	40	82	3	181	27	22	26	23	1.99
41646666--41646771	39	2.7	40	86	7	155	23	19	27	29	1.98
41646665--41646787	39	3.2	40	80	12	148	25	19	26	28	1.99
41647143--41647243	39	2.5	40	85	1	132	30	22	24	21	1.99
41647143--41647325	40	4.6	40	82	3	181	27	22	26	23	1.99
41657349--41657532	40	4.6	40	82	4	174	28	22	26	23	1.99
41665457--41665640	40	4.6	40	82	4	174	28	22	26	23	1.99
41667088--41667195	40	2.7	40	91	2	173	23	21	26	28	1.99
41668169--41668197	14	2.1	14	100	0	58	44	13	20	20	1.85
41672399--41672667	46	5.8	46	69	13	192	30	27	19	21	1.98
41672406--41672671	93	2.9	93	91	0	424	29	28	19	22	1.98
41684927--41685028	28	3.5	29	81	6	109	28	27	14	29	1.95
41692485--41692519	15	2.3	15	95	0	61	28	2	11	57	1.48
41696580--41696763	79	2.3	82	82	7	227	25	26	23	25	2.00
41696561--41696764	40	5.1	40	83	8	229	25	26	23	25	2.00
41704607--41704787	79	2.3	80	80	7	199	25	26	22	25	2.00
41704607--41704787	40	4.6	38	79	13	170	25	26	22	25	2.00
41707336--41707396	30	2.0	30	83	0	77	31	22	8	37	1.84
41712052--41712099	25	1.9	25	91	0	78	35	27	12	25	1.92
41712140--41712186	20	2.3	20	96	0	85	34	8	23	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41712231--41712384	24	6.4	24	90	2	220	30	22	20	26	1.98
41712233--41712377	47	3.1	47	90	1	218	30	22	19	27	1.98
41712591--41712654	31	2.1	31	90	0	101	35	15	23	25	1.94
41723497--41723649	29	5.4	28	79	6	155	27	15	30	27	1.96
41725678--41725809	43	3.1	42	70	12	115	27	17	28	27	1.98
41728733--41728770	20	1.9	20	100	0	76	39	15	5	39	1.70
41731655--41731729	31	2.4	31	88	0	123	13	33	34	18	1.90
41731675--41731742	31	2.2	30	82	10	75	11	35	32	20	1.89
41733390--41733534	40	3.6	40	85	4	193	23	25	25	25	2.00
41760943--41760977	16	2.1	17	89	5	54	20	22	34	22	1.97
41761034--41761186	29	5.4	28	79	6	155	27	15	30	27	1.96
41763199--41763330	43	3.1	42	70	12	115	27	17	28	27	1.98
41765607--41765758	40	3.9	40	75	10	125	26	25	26	21	2.00
41765610--41765755	77	1.9	78	84	7	199	26	23	27	22	1.99
41765607--41765794	40	4.8	39	74	12	122	25	24	27	22	2.00
41767414--41767439	10	2.6	10	100	0	52	42	30	0	26	1.56
41768538--41768578	21	1.9	22	90	5	66	39	31	7	21	1.81
41769704--41769729	12	2.2	12	100	0	52	46	30	15	7	1.74
41771417--41771491	31	2.4	31	90	0	132	13	32	36	18	1.90
41771417--41771504	31	2.8	30	81	10	79	12	34	34	19	1.89
41773870--41773994	44	2.8	44	85	8	164	22	31	19	27	1.98
41777176--41777429	41	6.3	40	80	5	190	37	20	20	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41777216--41777429	41	5.3	41	84	3	227	36	21	21	20	1.95
41777676--41777735	15	4.1	15	72	8	61	23	1	30	45	1.63
41778380--41778444	28	2.4	26	73	16	62	53	3	0	43	1.16
41780167--41780267	28	3.5	30	82	6	118	29	14	26	28	1.95
41780196--41780271	29	2.7	28	76	13	75	30	14	26	28	1.95
41788052--41788152	28	3.5	30	82	6	118	29	14	26	28	1.95
41788081--41788156	29	2.7	28	76	13	75	30	14	26	28	1.95
41789698--41789741	3	14.7	3	100	0	88	68	0	0	31	0.90
41791386--41791418	2	16.5	2	93	0	57	0	0	45	54	0.99
41798648--41798885	48	5.0	48	93	4	412	34	6	28	30	1.82
41798648--41798885	92	2.5	95	93	4	410	34	6	28	30	1.82
41799026--41799127	36	2.8	37	93	3	179	23	20	31	24	1.98
41800415--41800582	40	4.2	40	92	0	282	25	20	27	26	1.99
41800408--41800602	80	2.5	80	82	5	261	25	20	26	27	1.99
41800609--41800770	28	5.7	26	72	15	108	22	16	29	31	1.96
41800642--41800770	29	4.5	28	78	8	118	21	17	30	31	1.96
41800610--41800798	57	3.3	57	85	3	231	22	16	30	30	1.96
41803277--41803382	53	2.0	53	98	0	203	40	6	16	35	1.75
41804284--41804429	48	3.0	48	93	0	247	34	5	28	31	1.80
41804570--41804672	37	2.8	37	95	0	179	23	19	32	25	1.98
41807019--41807238	40	5.6	40	79	5	223	26	26	22	24	2.00
41824907--41825126	40	5.6	40	77	4	214	27	25	21	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41828148--41828278	46	2.8	45	84	11	160	25	28	16	29	1.97
41828099--41828271	93	1.9	91	84	5	233	24	28	18	27	1.98
41838445--41838618	49	3.6	48	75	12	167	28	19	28	22	1.98
41838444--41838645	98	2.1	96	87	5	282	28	19	28	23	1.98
41845744--41845836	6	15.2	6	74	17	59	78	1	5	15	0.98
41845745--41845831	5	16.8	5	77	11	70	78	1	5	14	1.00
41845755--41845810	17	3.4	17	78	11	64	78	1	7	12	1.02
41845742--41845834	43	2.2	43	79	7	100	79	1	5	13	0.96
41854632--41854805	49	3.5	49	88	1	258	25	17	28	29	1.97
41854624--41854805	99	1.8	99	93	0	319	25	17	28	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378