Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  167  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48733962--48734084
47
2.6
45
81
13
135
26
17
30
24
1.97
48735433--48735484
26
2.0
26
100
0
104
30
7
26
34
1.85
48735771--48735848
32
2.5
32
89
4
115
37
10
12
39
1.78
48739553--48739597
23
2.0
23
82
8
56
40
13
6
40
1.71
48745795--48745821
14
1.9
14
100
0
54
37
25
7
29
1.83
48745956--48746020
33
1.9
34
93
3
114
46
13
4
35
1.64
48751144--48751211
26
2.6
26
97
0
127
22
27
25
25
1.99
48755428--48755601
46
3.8
45
76
8
181
28
28
21
21
1.99
48755436--48755605
92
1.8
93
91
1
279
27
28
21
21
1.99
48758285--48758755
171
2.7
169
88
2
665
34
15
13
36
1.86
48759484--48759798
157
2.0
157
100
0
630
31
20
13
33
1.92
48761723--48761817
48
2.0
47
84
10
122
56
6
3
33
1.40
48762796--48762843
20
2.4
19
80
10
51
58
0
0
41
0.98
48762799--48762847
7
7.1
7
82
15
50
61
0
0
38
0.96
48762801--48762843
21
2.1
21
87
8
63
60
0
0
39
0.97
48764689--48764739
27
2.0
26
84
7
68
43
0
0
56
0.99
48766260--48766293
16
2.1
16
89
10
52
70
11
5
11
1.32
48770042--48770085
3
14.7
3
100
0
88
31
0
0
68
0.90
48770468--48770587
7
16.6
7
68
10
62
27
2
25
45
1.66
48770395--48770587
95
2.0
95
84
7
250
25
2
24
46
1.65
48770552--48770631
22
3.7
21
75
8
63
28
1
25
45
1.61
48770476--48770638
73
2.2
73
82
2
184
27
2
24
45
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48770975--48771094
40
3.0
40
85
3
152
26
21
18
33
1.96
48783276--48783314
18
2.2
18
100
0
78
35
15
23
25
1.94
48783661--48783832
43
4.0
43
76
6
132
32
27
16
23
1.96
48789531--48789604
6
12.3
6
82
0
85
75
2
6
14
1.12
48791768--48791796
8
3.6
8
100
0
58
27
0
34
37
1.57
48795007--48795047
21
1.9
22
95
5
75
65
0
9
24
1.22
48800694--48800760
5
13.6
5
73
14
59
76
0
2
20
0.92
48800696--48800745
14
3.5
14
81
10
57
74
0
2
24
0.93
48809069--48809093
11
2.3
11
100
0
50
12
28
16
44
1.83
48817684--48817762
34
2.3
35
80
6
90
25
18
24
31
1.98
48818525--48818566
6
6.7
6
84
10
57
83
0
11
4
0.79
48818525--48818576
20
2.7
20
82
14
72
78
1
11
7
1.02
48822082--48822156
31
2.4
31
86
0
87
22
32
24
21
1.98
48824713--48824831
27
4.4
27
83
0
148
36
17
20
25
1.94
48825550--48825612
33
1.9
32
87
3
90
22
23
17
36
1.95
48830817--48830962
27
5.4
27
87
0
211
35
19
20
23
1.96
48831696--48831723
2
14.0
2
100
0
56
50
0
0
50
1.00
48832987--48833135
40
3.7
41
80
8
137
30
22
14
31
1.94
48833020--48833184
80
2.0
81
81
5
192
32
21
15
30
1.94
48834534--48834568
17
2.0
18
88
5
54
77
0
5
17
0.96
48834725--48834807
8
9.8
8
75
8
67
69
0
7
22
1.12
48835982--48837194
308
3.9
308
86
1
1644
23
20
18
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48838994--48839156
42
3.8
43
74
10
120
33
25
17
23
1.97
48840692--48840728
18
2.1
18
90
10
58
32
27
13
27
1.94
48842617--48842695
29
2.7
29
86
5
106
27
32
15
24
1.95
48843794--48843831
19
2.1
18
85
9
51
13
18
2
65
1.37
48859247--48859324
40
2.0
40
86
0
111
35
32
14
17
1.90
48859651--48859689
18
2.2
18
90
4
62
17
43
25
12
1.85
48861532--48861640
26
4.2
26
93
0
191
33
7
23
35
1.83
48863124--48863176
26
2.0
26
82
7
63
39
20
15
24
1.91
48866130--48866326
78
2.5
78
81
5
220
17
18
28
34
1.94
48866130--48866325
39
5.0
39
84
3
198
17
18
28
34
1.94
48869990--48870142
39
3.9
39
92
0
252
23
20
32
23
1.98
48869991--48870173
39
4.6
39
89
0
249
23
22
31
22
1.99
48869997--48870211
78
2.7
78
84
5
218
24
22
30
22
1.99
48878074--48878224
39
3.8
39
86
4
214
24
21
30
23
1.99
48878075--48878224
78
1.9
79
91
1
248
24
21
30
24
1.99
48884382--48884415
12
2.8
12
95
0
59
70
5
14
8
1.31
48885243--48885279
17
2.1
19
90
10
60
13
45
29
10
1.77
48894034--48894073
19
2.2
19
86
8
57
35
2
2
60
1.24
48897657--48897698
21
1.9
21
85
9
57
52
7
21
19
1.69
48901010--48901093
31
2.7
31
77
10
93
30
0
3
65
1.10
48902271--48902330
31
1.9
31
83
6
77
61
1
1
35
1.16
48904044--48904186
50
2.9
50
92
0
223
25
18
27
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48904104--48904179
24
3.1
24
65
20
66
27
18
25
28
1.98
48906136--48906189
20
2.7
20
91
5
74
33
5
24
37
1.79
48906145--48906182
11
3.6
11
79
13
53
31
2
26
39
1.70
48909113--48909309
50
3.9
50
87
0
259
25
18
26
29
1.98
48912976--48913028
27
2.0
27
84
0
70
24
28
13
33
1.93
48913773--48913870
19
5.2
19
92
7
164
37
10
16
35
1.82
48913763--48913870
36
2.9
35
78
20
112
37
10
15
36
1.82
48921491--48921764
132
2.1
132
93
0
476
31
17
24
26
1.97
48921554--48921764
44
4.8
44
78
4
228
30
17
25
27
1.97
48922723--48922960
49
4.8
49
87
3
316
28
26
18
26
1.98
48922723--48922967
99
2.5
100
86
3
343
28
27
18
25
1.98
48926124--48926307
40
4.6
39
77
6
147
28
23
26
22
1.99
48934228--48934411
40
4.6
39
77
6
147
28
23
26
22
1.99
48936525--48936585
15
4.0
15
77
8
52
57
16
14
11
1.65
48940097--48940306
40
5.2
40
87
2
305
25
24
28
21
1.99
48948230--48948479
40
6.2
40
90
1
385
25
24
28
22
1.99
48950741--48950804
24
2.6
25
87
4
87
32
31
15
20
1.94
48950828--48950877
24
2.1
24
88
0
73
32
30
12
26
1.92
48950833--48951141
94
3.3
94
93
0
537
39
19
11
30
1.86
48952827--48953004
40
4.5
40
90
2
261
24
23
27
24
2.00
48960751--48960888
40
3.5
40
89
3
199
23
23
27
24
2.00
48970479--48970637
43
3.7
43
80
9
182
23
16
26
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48972471--48972802
48
6.9
48
85
1
396
26
29
18
25
1.98
48972468--48972801
144
2.3
144
86
0
461
26
29
18
25
1.98
48978383--48978498
29
4.0
29
90
4
110
25
22
14
37
1.92
48978396--48978498
29
3.5
29
96
2
188
24
24
14
36
1.93
48978395--48978528
59
2.2
60
89
1
207
25
25
14
35
1.93
48987422--48987473
20
2.6
20
90
0
86
26
36
26
9
1.87
48990755--48990888
56
2.4
56
88
0
196
29
14
23
32
1.94
48991968--48992005
2
19.0
2
100
0
76
50
0
0
50
1.00
48992986--48993018
17
1.9
17
100
0
66
21
6
24
48
1.72
48996070--48996126
17
3.2
17
75
7
60
59
1
0
38
1.08
48996477--48996551
37
2.0
37
97
0
141
34
20
2
42
1.66
48996489--48996549
19
3.3
19
64
13
54
34
22
3
39
1.71
48997000--48997025
13
2.0
13
100
0
52
92
7
0
0
0.39
49000162--49000195
12
2.8
12
90
4
50
23
8
2
64
1.36
49006912--49006940
5
5.8
5
100
0
58
62
0
0
37
0.96
49007116--49007149
16
2.1
16
88
0
50
35
8
0
55
1.31
49015431--49015501
34
2.1
34
81
0
79
45
19
5
29
1.73
49019343--49019720
47
8.1
47
91
1
544
34
9
28
26
1.88
49019602--49019677
22
3.3
22
66
28
59
34
11
28
25
1.91
49019343--49019766
140
3.0
139
85
4
484
34
9
29
26
1.88
49019694--49019873
46
4.0
46
89
4
258
33
8
31
25
1.87
49019694--49019873
89
2.0
91
86
3
256
33
8
31
25
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49025615--49025645
11
2.8
11
90
0
53
51
0
0
48
1.00
49031032--49031076
20
2.2
20
84
7
56
40
11
2
46
1.52
49034421--49034502
41
2.0
41
92
0
137
47
13
7
31
1.70
49034539--49034578
19
2.1
19
90
0
62
45
12
5
37
1.64
49035251--49035281
2
15.5
2
100
0
62
48
0
0
51
1.00
49039221--49039264
15
2.9
15
80
12
54
61
0
2
36
1.09
49046508--49046565
22
2.6
21
81
8
53
77
3
3
15
1.04
49046692--49046751
5
12.0
5
80
19
72
78
0
0
21
0.75
49046672--49046754
16
5.3
15
81
10
78
75
0
2
21
0.91
49047051--49047123
33
2.2
33
92
0
119
17
34
30
17
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378