genome.fa.s1.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  183  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53513596--53513750	67	2.3	67	88	3	240	18	29	20	31	1.97
53520039--53520089	25	2.0	25	100	0	102	33	27	27	11	1.92
53521034--53521083	26	1.9	26	84	8	66	20	26	22	32	1.98
53523112--53523138	2	13.5	2	100	0	54	48	0	0	51	1.00
53531794--53531980	40	4.7	40	80	4	171	29	23	25	21	1.99
53531794--53531947	80	1.9	80	85	0	209	28	22	25	22	1.99
53531798--53531980	80	2.3	80	80	0	204	28	24	25	21	1.99
53534093--53534380	48	6.0	48	92	1	481	34	5	28	31	1.81
53534102--53534380	94	2.9	96	93	2	481	33	6	29	30	1.82
53534093--53534380	142	2.0	143	92	1	479	34	5	28	31	1.81
53534520--53534622	37	2.8	37	93	0	179	23	19	32	25	1.98
53535907--53536358	40	11.3	40	95	0	796	25	19	27	27	1.99
53536390--53536546	28	5.6	27	77	8	143	21	18	29	30	1.97
53536418--53536546	29	4.5	28	78	8	118	21	17	30	31	1.96
53536386--53536574	57	3.3	57	86	2	247	22	17	30	29	1.97
53539935--53540270	48	7.0	48	95	1	604	33	5	28	31	1.81
53539935--53540270	142	2.3	143	95	1	602	33	5	28	31	1.81
53540411--53540513	37	2.8	37	90	0	161	24	17	31	27	1.97
53545374--53545551	49	3.6	50	80	6	170	25	32	16	24	1.96
53545374--53545597	48	4.6	49	74	11	185	25	32	17	25	1.97
53545375--53545648	47	5.7	48	76	9	224	24	30	18	27	1.98
53556692--53556873	78	2.3	77	86	2	229	23	30	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53556722--53556874	39	3.9	39	91	0	234	24	31	21	22	1.98
53564678--53564859	78	2.3	77	87	2	238	23	31	22	23	1.99
53564708--53564860	39	3.9	39	92	0	243	23	32	21	22	1.98
53575454--53575515	31	2.0	31	100	0	106	32	19	6	41	1.77
53578218--53578508	24	12.1	24	97	0	501	35	25	18	20	1.95
53586278--53586568	24	12.1	24	97	0	501	35	25	18	20	1.95
53594334--53594621	24	12.1	24	96	1	492	35	25	18	20	1.95
53601610--53601785	46	3.8	46	79	12	216	20	21	29	28	1.98
53601607--53601778	93	1.8	93	96	0	317	20	21	29	27	1.98
53604995--53605162	93	1.8	90	87	3	246	22	20	27	29	1.98
53605390--53605427	19	2.0	20	85	15	53	36	0	23	39	1.55
53609723--53609823	28	3.5	28	86	6	114	29	13	26	29	1.94
53617683--53617783	28	3.5	28	86	6	114	29	13	26	29	1.94
53625199--53625338	42	3.3	43	72	19	123	25	18	25	30	1.98
53627265--53627377	44	2.6	43	74	12	106	23	19	25	30	1.98
53627327--53627443	43	2.8	42	70	14	105	25	17	25	30	1.97
53630908--53630958	16	3.2	16	97	0	93	52	13	11	21	1.72
53634716--53634748	16	2.1	16	94	5	59	15	0	15	69	1.19
53636393--53636572	89	2.0	89	94	0	315	31	19	21	27	1.97
53637264--53637328	19	3.2	21	71	18	57	47	13	7	30	1.71
53639160--53639185	12	2.2	12	100	0	52	23	38	15	23	1.92
53640617--53640695	6	12.8	6	72	15	63	49	12	17	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53640617--53640727	31	3.5	31	87	1	150	50	11	17	20	1.77
53640865--53640965	27	3.8	26	86	5	121	35	20	24	18	1.95
53640882--53640985	54	2.0	54	82	3	131	37	22	22	18	1.94
53641124--53641188	22	3.0	22	80	8	78	35	21	21	21	1.96
53641622--53641815	27	7.3	27	87	1	275	24	22	20	32	1.98
53641666--53641978	54	5.8	53	84	4	227	28	14	20	36	1.92
53641662--53641942	81	3.5	80	81	6	239	28	15	20	35	1.94
53641797--53641978	27	6.7	27	85	0	256	31	9	20	38	1.85
53641797--53641978	54	3.4	54	93	0	319	31	9	20	38	1.85
53643425--53643543	46	2.6	44	83	8	150	26	18	29	25	1.98
53648028--53648179	27	5.4	27	81	4	169	28	14	25	31	1.95
53653743--53653855	43	2.7	43	80	1	129	32	24	18	23	1.97
53668158--53668276	27	4.6	27	72	12	106	40	20	10	28	1.86
53668228--53668320	27	3.4	27	82	2	107	38	20	9	31	1.85
53668315--53668374	27	2.2	27	84	0	75	33	20	10	36	1.86
53668329--53668428	27	3.7	27	84	0	119	30	22	7	41	1.80
53668423--53668671	27	9.2	27	83	3	304	35	18	20	25	1.95
53668426--53668668	81	3.0	81	90	1	373	35	18	20	25	1.95
53669075--53669162	6	14.3	6	75	13	72	20	17	13	48	1.80
53669075--53669151	31	2.5	31	89	0	109	20	18	12	48	1.81
53670099--53670132	18	1.9	17	88	5	50	20	17	17	44	1.87
53675499--53675660	40	4.1	40	88	1	218	22	20	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53678730--53678890	47	3.4	47	96	0	295	30	10	31	27	1.90
53678864--53678930	32	2.1	32	100	0	134	34	8	25	31	1.87
53678926--53679015	46	2.0	46	88	0	135	34	7	30	27	1.85
53678770--53679001	126	1.8	125	82	8	301	32	10	29	27	1.90
53687370--53687414	24	1.9	23	95	4	81	60	4	2	33	1.29
53687396--53687466	18	3.8	18	75	18	65	67	1	1	29	1.07
53687418--53687474	21	2.8	21	86	7	82	64	1	1	31	1.13
53688630--53688667	17	2.2	18	85	4	51	36	0	0	63	0.95
53689416--53689450	15	2.3	15	95	0	61	17	0	34	48	1.47
53693227--53693376	74	2.0	74	97	0	282	40	16	12	31	1.85
53695229--53695293	29	2.3	29	83	2	78	41	3	24	30	1.70
53695773--53695937	43	3.9	44	81	6	187	28	13	24	33	1.93
53695777--53695933	85	1.9	84	85	4	217	28	14	25	32	1.94
53696943--53697080	42	3.3	42	89	4	206	18	25	35	21	1.95
53702674--53702799	43	2.9	43	79	9	123	34	29	15	20	1.94
53709393--53709426	2	17.0	2	100	0	68	50	0	0	50	1.00
53712106--53712351	40	6.2	39	80	8	266	25	22	27	24	2.00
53712106--53712324	78	2.8	78	91	4	332	26	23	27	22	1.99
53712106--53712331	118	1.9	118	86	1	319	25	23	27	23	2.00
53718908--53719155	40	6.2	40	78	4	250	26	21	27	25	1.99
53718908--53719128	80	2.8	80	90	0	334	27	22	27	23	1.99
53718909--53719131	120	1.9	121	86	2	324	27	21	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53718908--53719155	80	3.1	80	87	1	329	26	21	27	25	1.99
53725949--53726046	39	2.5	39	86	3	135	26	19	25	28	1.99
53730987--53731050	28	2.3	28	97	0	119	18	17	35	28	1.93
53731367--53731705	27	12.7	26	81	10	346	38	20	10	30	1.86
53731389--53731705	53	5.9	53	84	5	372	38	20	10	30	1.86
53731367--53731693	80	4.1	81	85	5	405	38	19	10	30	1.86
53731684--53731748	27	2.4	27	84	0	76	38	18	16	26	1.92
53736341--53736394	26	2.1	26	96	0	99	35	14	16	33	1.90
53738033--53738078	21	2.2	21	88	11	69	71	6	4	17	1.24
53748238--53748321	29	2.9	29	92	0	141	27	30	14	27	1.95
53748186--53748321	61	2.3	58	81	6	148	27	30	14	27	1.95
53756134--53756217	29	2.9	29	92	0	141	27	30	14	27	1.95
53756082--53756217	61	2.3	58	81	6	148	27	30	14	27	1.95
53769851--53769881	5	6.2	5	100	0	62	38	0	0	61	0.96
53774865--53774899	11	3.2	11	91	0	52	45	14	0	40	1.45
53774841--53774903	22	3.0	22	69	4	58	41	15	1	41	1.57
53775037--53775168	48	2.7	47	82	13	162	33	9	5	52	1.56
53776144--53776220	7	11.0	7	100	0	154	28	0	14	57	1.38
53776216--53776240	7	3.6	7	100	0	50	28	0	16	56	1.41
53780364--53780743	126	3.0	126	89	0	555	27	18	17	36	1.94
53781288--53781357	19	3.8	19	78	14	74	44	18	0	37	1.50
53781465--53781534	32	2.2	32	87	7	106	50	22	0	27	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53784161--53784204	17	2.6	17	92	3	72	65	4	0	29	1.12
53786300--53786347	24	2.0	24	91	0	78	35	2	10	52	1.48
53788957--53789077	61	2.0	61	93	0	206	32	21	14	32	1.93
53793933--53794045	51	2.2	51	100	0	226	16	29	33	20	1.95
53804334--53804434	28	3.5	28	86	6	114	29	26	13	29	1.94
53808048--53808211	71	2.3	71	100	0	328	18	28	17	35	1.94
53808048--53808245	71	2.8	70	91	3	258	20	28	17	33	1.95
53809526--53809723	54	3.8	54	76	14	234	25	23	14	36	1.92
53809595--53809795	47	4.1	47	78	13	235	26	23	13	35	1.93
53809540--53809770	101	2.3	101	96	0	417	25	23	13	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378