Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  42  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10332720--10332770
21
2.4
21
80
0
66
29
19
49
1
1.60
10333166--10333454
43
6.7
43
95
0
497
25
33
19
21
1.97
10333932--10333969
20
1.9
20
89
10
60
57
2
10
28
1.45
10334898--10334946
26
2.0
25
84
8
64
69
2
6
22
1.21
10340057--10340097
21
2.0
20
86
9
57
63
2
2
31
1.20
10340867--10340907
21
2.0
20
86
9
57
63
2
2
31
1.20
10340901--10340960
9
6.6
9
73
9
50
58
3
0
38
1.15
10340907--10340969
17
3.6
17
71
12
56
57
3
0
39
1.15
10341535--10341588
27
2.0
27
85
7
74
57
3
0
38
1.17
10341668--10341705
21
1.9
19
85
15
51
63
2
0
34
1.09
10341709--10341759
26
2.0
25
84
3
66
54
1
0
43
1.11
10347209--10347233
10
2.5
10
100
0
50
44
0
16
40
1.47
10357230--10357331
50
2.0
50
100
0
204
33
14
15
36
1.88
10359799--10359841
15
3.2
15
69
30
51
55
18
18
6
1.64
10359790--10359841
25
2.1
25
100
0
104
57
19
15
7
1.62
10360045--10360073
2
14.5
2
100
0
58
51
0
0
48
1.00
10362251--10362290
19
2.1
19
85
4
53
52
2
12
32
1.52
10374358--10374423
33
2.0
33
85
8
89
37
1
4
56
1.29
10373898--10374506
127
4.8
128
82
8
719
33
6
6
53
1.52
10374000--10374494
243
2.0
251
84
4
657
34
6
6
52
1.52
10380382--10380425
22
2.0
22
82
8
54
2
50
0
47
1.13
10380390--10380440
22
2.4
21
83
9
59
1
47
0
50
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10395365--10395470
53
2.0
53
98
0
203
40
13
19
26
1.88
10397473--10397515
21
2.0
21
95
0
77
30
27
13
27
1.95
10399718--10399803
43
2.0
43
100
0
172
25
11
25
37
1.90
10412579--10412629
24
2.1
24
92
0
84
35
1
39
23
1.66
10414046--10414133
27
3.2
27
85
7
124
14
25
23
36
1.93
10414046--10414157
54
2.1
54
85
6
147
15
25
22
37
1.93
10422573--10422636
30
2.2
29
97
2
119
25
17
23
34
1.96
10425471--10425552
41
2.0
41
100
0
164
26
26
0
46
1.53
10425766--10425934
47
3.6
47
73
11
148
25
30
19
24
1.98
10429226--10429279
15
3.7
14
78
7
54
46
38
0
14
1.45
10429226--10429283
7
8.0
7
77
7
62
46
37
0
15
1.46
10429226--10429280
22
2.5
22
87
0
74
45
40
0
14
1.45
10430535--10430590
28
2.0
28
100
0
112
28
21
14
35
1.92
10437746--10437791
22
2.1
22
84
8
58
45
28
10
15
1.79
10437800--10437851
20
2.6
20
81
0
59
53
9
0
36
1.34
10444647--10444696
24
2.1
24
100
0
100
20
12
8
60
1.57
10446269--10446309
20
2.0
20
85
4
55
39
12
19
29
1.88
10451450--10451531
26
3.2
26
91
0
137
32
7
23
36
1.82
10452711--10452740
8
3.8
8
90
0
51
43
26
26
3
1.70
10453130--10453243
27
4.2
27
88
6
160
18
22
23
35
1.96
10453130--10453261
27
4.9
26
88
5
158
19
23
21
34
1.96
10458504--10458631
24
5.2
26
91
7
205
28
7
25
37
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10460223--10460366
54
2.7
54
93
2
245
18
25
22
34
1.96
10460226--10460384
27
5.9
27
82
11
184
19
25
21
33
1.97
10460226--10460384
81
2.0
80
86
8
225
19
25
21
33
1.97
10463755--10463784
15
2.1
15
93
6
53
76
0
0
23
0.78
10463752--10463821
27
2.7
25
84
6
86
74
0
1
24
0.90
10463863--10463967
19
5.4
19
74
22
85
64
4
1
28
1.24
10463879--10463955
29
2.8
26
83
15
86
67
5
1
25
1.19
10463879--10463947
9
7.8
8
75
24
59
68
4
1
26
1.17
10463767--10464004
10
25.0
9
67
23
68
61
4
2
31
1.26
10463943--10463988
19
2.3
21
88
7
69
58
4
2
34
1.30
10463943--10463995
19
2.7
20
79
5
63
60
3
1
33
1.26
10465891--10465951
10
6.3
10
78
14
65
22
3
0
73
0.97
10465891--10465980
9
9.7
9
79
9
92
22
3
2
72
1.11
10465891--10465970
19
4.3
18
84
9
83
23
2
1
72
1.04
10466624--10466668
3
15.3
3
81
4
56
66
4
28
0
1.11
10478046--10478074
12
2.3
13
94
5
51
65
6
6
20
1.40
10480956--10480999
20
2.2
20
92
4
72
50
2
18
29
1.59
10481214--10481310
19
4.7
19
71
20
63
69
3
1
26
1.10
10481234--10481314
26
3.0
27
80
10
78
67
1
1
29
1.06
10481207--10481314
46
2.4
44
84
10
130
67
2
1
27
1.15
10481232--10481314
9
8.9
10
71
16
63
67
1
1
30
1.06
10481256--10481457
19
10.5
19
65
21
66
57
3
1
36
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10481345--10481446
10
11.0
10
72
15
60
57
3
0
37
1.24
10481349--10481446
9
10.6
9
74
11
65
59
4
1
35
1.23
10481356--10481420
27
2.4
27
94
2
114
56
3
1
38
1.24
10488319--10488359
19
2.2
19
83
12
50
34
4
4
56
1.42
10488425--10488462
5
7.6
5
100
0
76
57
0
0
42
0.98
10490106--10490159
27
2.0
27
92
0
90
24
3
33
38
1.73
10491273--10491313
2
20.5
2
100
0
82
51
0
0
48
1.00
10491836--10491959
41
3.1
41
65
21
109
26
27
11
34
1.91
10491796--10491998
78
2.6
78
93
1
338
25
27
12
34
1.92
10491877--10491996
37
3.1
37
65
17
100
25
28
13
32
1.93
10496336--10496365
15
1.9
16
93
6
53
63
0
6
30
1.20
10496447--10496490
20
2.4
17
88
11
61
65
0
34
0
0.93
10501786--10501947
76
2.1
77
87
1
236
25
25
12
35
1.91
10501831--10501948
37
3.1
37
66
13
96
26
27
12
33
1.92
10502265--10502309
8
5.5
8
85
12
56
84
0
6
8
0.78
10503201--10503242
2
21.0
2
100
0
84
50
0
0
50
1.00
10503511--10503548
19
2.0
19
94
0
67
31
23
10
34
1.89
10518354--10518391
3
13.0
3
94
5
69
65
0
0
34
0.93
10519062--10519103
20
2.1
20
86
0
57
47
0
7
45
1.30
10520633--10520687
26
2.1
25
80
9
65
45
9
7
38
1.64
10520943--10520993
22
2.3
22
81
18
61
41
0
1
56
1.10
10525199--10525223
7
3.6
7
100
0
50
12
16
0
72
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10525256--10525281
2
13.0
2
100
0
52
50
0
0
50
1.00
10530254--10530375
24
5.0
24
91
5
201
35
4
39
20
1.74
10531760--10531843
27
3.2
26
86
5
105
16
22
22
38
1.93
10535569--10535608
18
2.2
18
95
0
71
20
27
17
35
1.95
10548854--10549024
25
7.0
25
71
11
68
33
17
29
19
1.95
10548953--10549018
24
2.7
24
83
6
71
36
13
33
16
1.88
10551871--10551911
16
2.7
16
82
17
52
75
0
7
17
1.02
10553121--10553183
25
2.5
25
84
0
72
23
25
15
34
1.95
10555680--10555735
28
2.0
28
100
0
112
46
17
10
25
1.80
10556719--10556802
42
2.0
42
90
0
132
20
25
13
41
1.88
10559206--10559259
24
2.2
24
83
0
63
35
22
25
16
1.95
10572672--10572735
31
2.1
31
87
0
92
23
23
17
35
1.95
10572928--10573118
24
8.0
24
91
2
296
27
21
20
30
1.98
10573167--10573233
20
3.3
20
89
0
107
31
20
13
34
1.92
10580800--10580862
31
2.1
31
87
3
92
22
23
17
36
1.95
10581051--10581237
23
8.0
24
89
7
278
27
21
21
29
1.99
10581050--10581237
47
4.0
47
89
6
285
27
21
21
29
1.99
10581050--10581237
70
2.7
70
89
6
274
27
21
21
29
1.99
10581286--10581352
20
3.3
20
89
0
107
31
20
13
34
1.92
10583521--10583574
26
2.1
25
82
6
63
44
16
14
24
1.85
10584127--10584161
18
1.9
18
100
0
70
31
0
28
40
1.57
10586156--10586219
31
2.1
31
90
0
101
25
23
15
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10586434--10586574
24
6.0
24
89
3
205
30
21
21
26
1.98
10586432--10586579
71
2.1
71
92
0
242
29
21
20
28
1.98
10586413--10586578
47
3.5
47
86
6
228
28
22
21
27
1.99
10586636--10586692
9
5.9
9
73
15
51
35
21
8
35
1.84
10586624--10586694
20
3.5
20
94
0
124
32
21
11
35
1.89
10586629--10586683
11
5.4
11
70
16
55
30
20
12
36
1.90
10587995--10588632
27
23.6
27
86
4
750
40
9
22
27
1.85
10591404--10591438
18
1.9
18
100
0
70
62
17
0
20
1.32
10593617--10593722
41
2.6
41
86
0
140
37
19
19
22
1.94
10593879--10593932
7
7.7
7
78
0
54
24
0
25
50
1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378