Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  162  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47269474--47269581
44
2.4
44
87
3
144
29
23
13
33
1.93
47273962--47274011
21
2.3
22
93
6
84
34
28
26
12
1.92
47273937--47274023
21
4.0
23
77
10
83
37
24
21
16
1.93
47276092--47276170
29
2.7
29
86
5
106
27
32
15
24
1.95
47276810--47276845
2
18.0
2
88
0
54
44
2
2
50
1.31
47278548--47278574
5
5.4
5
100
0
54
59
0
0
40
0.98
47278599--47278639
3
15.0
3
80
19
54
63
0
0
36
0.95
47278597--47278641
8
5.6
8
100
0
90
62
0
0
37
0.96
47282996--47283213
40
5.6
40
88
5
304
26
28
21
23
1.99
47282996--47283213
77
2.8
78
88
5
300
26
28
21
23
1.99
47283999--47284024
2
13.0
2
100
0
52
50
0
0
50
1.00
47286122--47286273
35
4.3
35
76
0
142
28
9
18
42
1.82
47295484--47295534
12
4.2
13
77
22
58
45
0
0
54
0.99
47295339--47295535
62
3.1
61
69
13
159
41
2
4
51
1.34
47307636--47307674
20
1.9
21
94
5
71
41
25
5
28
1.77
47311948--47311976
2
14.5
2
100
0
58
48
0
0
51
1.00
47318704--47318748
19
2.5
18
82
7
56
48
0
0
51
1.00
47318845--47318903
23
2.7
21
71
23
50
37
6
10
45
1.65
47320256--47320291
18
2.0
18
88
0
54
61
5
19
13
1.52
47332977--47333089
45
2.6
44
84
8
133
36
23
19
20
1.95
47333060--47333393
44
7.7
44
68
7
216
36
22
22
19
1.95
47333017--47333402
86
4.4
87
82
4
408
36
22
22
19
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47332927--47333176
131
1.9
131
82
6
319
35
22
22
19
1.96
47332919--47333250
44
7.7
42
69
13
174
35
22
21
19
1.96
47332927--47333392
131
3.6
129
71
12
312
35
22
22
19
1.96
47333107--47333420
173
1.8
172
82
2
405
35
22
20
20
1.96
47333583--47333862
132
2.1
132
82
2
339
32
17
23
26
1.96
47333813--47333958
45
3.3
44
79
8
161
34
13
26
25
1.92
47349907--47350057
40
3.8
40
84
2
173
33
16
19
30
1.94
47359640--47359700
21
2.8
23
83
14
85
34
26
24
14
1.94
47359638--47359710
21
3.5
21
80
12
62
35
24
24
15
1.94
47360667--47360694
14
2.0
14
100
0
56
35
7
0
57
1.26
47360492--47360920
231
1.9
231
99
0
849
31
17
7
42
1.77
47369393--47369569
47
3.8
47
76
13
177
29
26
20
23
1.98
47369991--47370050
30
2.0
30
87
6
86
28
26
8
36
1.85
47373314--47373383
27
2.6
27
95
2
122
30
27
14
28
1.95
47379976--47380064
47
1.9
46
93
2
151
28
26
22
22
1.99
47380479--47380538
30
2.0
30
87
6
86
28
26
8
36
1.85
47385096--47385155
30
2.0
30
87
6
86
28
26
8
36
1.85
47392034--47392204
94
1.8
94
89
3
274
28
27
20
23
1.99
47392026--47392208
47
3.9
47
78
12
207
28
27
19
24
1.99
47392623--47392679
30
1.9
30
85
7
80
28
24
8
38
1.85
47394221--47394328
43
2.5
43
81
0
126
24
16
25
34
1.95
47406577--47406615
20
2.0
20
89
0
60
48
0
12
38
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47407720--47407771
20
2.7
19
82
5
68
25
28
23
23
1.99
47409581--47409850
48
5.6
48
83
1
263
24
27
17
30
1.97
47413812--47413904
39
2.4
40
81
5
118
23
27
23
24
2.00
47413774--47413957
40
4.6
39
74
8
147
24
27
23
23
2.00
47421850--47421978
40
3.3
39
82
7
111
23
26
25
24
2.00
47421885--47422031
78
1.9
80
85
5
210
24
27
23
24
2.00
47421866--47422031
40
4.2
37
77
9
125
24
27
24
24
2.00
47428622--47428777
48
3.2
48
80
3
127
23
29
19
28
1.98
47433476--47433510
15
2.2
16
90
5
54
54
8
2
34
1.46
47441045--47441070
7
3.7
7
100
0
52
61
11
26
0
1.30
47442173--47442241
20
3.0
25
76
20
69
57
0
1
40
1.07
47442225--47442268
18
2.4
18
92
0
70
61
0
0
38
0.96
47442173--47442264
45
2.1
42
84
9
114
58
0
1
40
1.05
47442226--47442273
18
2.9
17
87
9
64
62
0
0
37
0.95
47449424--47449492
15
4.6
15
83
0
84
11
17
13
57
1.64
47449415--47449502
30
3.0
30
81
8
99
10
17
15
56
1.66
47451847--47452017
45
3.7
46
78
14
183
20
21
29
28
1.98
47451852--47452025
46
3.8
46
78
13
205
20
21
29
28
1.98
47455276--47455326
19
2.6
19
87
9
68
74
0
5
19
1.02
47457887--47457921
5
6.8
5
90
3
52
42
17
0
40
1.49
47458535--47458568
15
2.3
15
90
10
52
2
20
2
73
1.09
47458625--47458658
11
2.8
12
86
13
52
50
0
2
47
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47464519--47464587
28
2.5
28
92
2
113
44
24
10
20
1.82
47476748--47476818
12
5.9
12
83
6
63
25
8
7
59
1.52
47476742--47476817
18
4.2
18
81
0
71
25
9
7
57
1.56
47476838--47476901
24
2.7
23
73
9
56
28
10
10
50
1.71
47477005--47477111
48
2.2
48
98
0
205
26
16
15
41
1.89
47477043--47477184
64
2.2
64
87
0
221
25
13
14
46
1.81
47479171--47479267
40
2.4
40
94
0
176
25
7
19
47
1.75
47479955--47479995
21
2.0
21
90
0
64
36
34
19
9
1.85
47483182--47483287
46
2.3
46
98
0
203
37
16
23
22
1.93
47483264--47483308
21
2.1
21
95
0
81
37
15
22
24
1.93
47483218--47483354
67
2.0
67
95
0
247
37
15
24
23
1.93
47483294--47483469
46
3.8
46
87
1
226
40
14
25
19
1.90
47484931--47484963
3
11.0
3
100
0
66
0
66
0
33
0.92
47488297--47488326
15
2.0
15
93
0
51
10
6
10
73
1.25
47494985--47495036
20
2.8
18
78
21
63
42
1
3
51
1.31
47502152--47502258
42
2.5
42
96
0
196
28
14
33
22
1.94
47502266--47502335
27
2.5
28
86
2
97
27
14
25
32
1.94
47509385--47509491
42
2.5
42
96
0
196
28
14
33
22
1.94
47509499--47509568
27
2.5
28
86
2
97
27
14
25
32
1.94
47511575--47511634
29
2.1
29
84
6
77
38
21
5
35
1.75
47513383--47513558
46
3.8
46
79
12
216
20
21
29
28
1.98
47513380--47513551
93
1.8
93
96
0
317
20
21
29
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47518799--47518850
24
2.2
24
89
0
77
55
5
1
36
1.35
47522824--47522871
20
2.4
20
85
0
60
29
8
18
43
1.79
47527557--47527624
31
2.2
31
89
0
100
22
27
33
16
1.95
47527621--47527669
22
2.2
22
81
0
62
20
20
32
26
1.97
47527698--47527742
18
2.6
18
85
3
56
11
33
40
15
1.83
47531926--47531967
11
3.8
11
82
17
52
33
0
4
61
1.17
47533950--47534006
20
2.9
19
79
7
53
49
14
7
29
1.69
47536937--47537018
20
4.0
21
76
12
98
29
12
8
50
1.69
47539755--47539785
16
1.9
16
93
0
53
48
0
0
51
1.00
47539717--47539782
29
2.2
30
86
10
91
54
0
0
45
0.99
47541116--47541194
37
2.0
40
81
16
94
48
1
1
49
1.17
47549422--47549536
43
2.7
44
82
8
130
25
16
26
32
1.96
47553982--47554019
20
1.9
20
94
0
67
18
0
5
76
0.97
47559209--47559257
24
2.0
24
100
0
98
51
0
4
44
1.20
47562211--47562271
17
3.7
16
80
6
59
27
3
4
63
1.30
47562209--47562281
34
2.1
34
82
5
85
27
2
5
64
1.29
47565552--47565777
40
5.7
40
86
4
246
26
26
21
26
1.99
47568956--47569046
32
2.8
31
90
6
130
75
13
6
4
1.14
47569607--47569639
2
16.5
2
93
0
57
48
3
0
48
1.17
47575531--47575743
39
5.6
36
83
13
193
26
27
20
25
1.99
47575531--47575747
40
5.7
39
84
11
247
26
27
21
25
1.99
47575559--47575747
72
2.5
72
83
12
222
26
26
20
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47586206--47586431
40
5.7
40
86
4
246
26
26
20
26
1.99
47586227--47586431
80
2.6
80
84
6
281
26
25
20
27
1.99
47590146--47590225
40
2.0
40
100
0
160
30
12
35
22
1.91
47599319--47599461
30
4.7
31
70
8
89
27
31
15
25
1.96
47599295--47599480
90
2.1
90
89
0
282
26
30
16
25
1.97
47601252--47601337
47
1.9
44
88
9
113
24
17
27
30
1.97
47602246--47602313
30
2.3
30
89
0
100
19
22
29
29
1.98
47604288--47604458
93
1.8
93
87
2
254
30
26
19
22
1.98
47607188--47607255
15
4.6
15
76
8
68
57
17
14
10
1.65
47607188--47607257
30
2.4
29
81
9
88
57
17
15
10
1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378