genome.fa.s1.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  154  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44394546--44394612	20	3.3	20	89	0	98	35	13	20	29	1.91
44394661--44394781	49	2.5	49	89	8	176	29	19	22	28	1.98
44394661--44394781	24	5.0	24	88	8	174	29	19	22	28	1.98
44394974--44395037	31	2.1	31	90	0	101	35	17	23	23	1.95
44398563--44398923	48	7.7	47	74	11	242	24	29	19	26	1.99
44398704--44398923	95	2.3	92	80	12	248	22	28	20	27	1.99
44400267--44400423	78	2.0	80	82	7	198	22	21	24	31	1.98
44400267--44400386	38	3.1	38	80	4	134	23	23	23	30	1.99
44400315--44400423	38	2.8	38	84	2	137	20	22	23	33	1.97
44414808--44415256	224	2.0	224	93	0	774	35	22	13	27	1.92
44418346--44419060	48	14.9	48	96	0	1241	34	6	28	30	1.83
44419205--44419303	37	2.7	37	90	0	153	26	18	31	24	1.97
44427091--44427135	20	2.2	20	80	0	54	71	0	13	15	1.15
44427451--44427505	28	1.9	29	85	10	78	58	9	0	32	1.30
44429367--44429525	44	3.6	44	81	9	189	30	29	13	27	1.94
44429337--44429926	177	3.3	173	79	9	602	27	25	18	28	1.98
44429600--44429879	44	6.3	45	72	9	137	26	25	18	29	1.98
44431162--44431187	2	13.0	2	100	0	52	50	0	0	50	1.00
44436880--44437043	71	2.3	71	100	0	328	18	28	17	35	1.94
44436880--44437077	71	2.8	70	90	3	249	20	28	17	33	1.95
44441822--44442091	47	5.7	47	93	2	398	30	8	30	29	1.88
44442187--44442271	37	2.3	37	95	0	152	24	20	34	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44448648--44448811	71	2.3	71	100	0	328	18	28	17	35	1.94
44448648--44448845	71	2.8	70	91	3	258	20	28	17	33	1.95
44451445--44451614	89	1.9	89	93	2	297	28	20	12	37	1.90
44453077--44453121	19	2.3	20	85	7	58	35	8	24	31	1.86
44456914--44456983	29	2.5	28	77	8	72	52	5	5	35	1.49
44467198--44467335	40	3.5	40	82	4	138	25	23	28	21	1.99
44473338--44473406	26	2.9	24	82	8	70	52	2	1	43	1.25
44474071--44474119	13	3.8	13	83	5	64	32	6	22	38	1.79
44479932--44480066	56	2.4	56	93	0	225	27	15	22	34	1.95
44479932--44480110	56	3.2	55	84	4	162	28	16	22	32	1.96
44482540--44482595	27	2.1	27	86	6	78	26	19	14	39	1.90
44490056--44490097	3	14.0	3	100	0	84	33	0	0	66	0.92
44494744--44494783	17	2.4	17	88	12	64	27	0	0	72	0.85
44513099--44513650	44	12.6	44	66	10	218	28	20	25	25	1.99
44513021--44513776	132	5.8	130	83	5	891	28	20	25	26	1.99
44513021--44513778	261	2.9	261	90	1	1142	28	20	25	26	1.99
44512975--44513671	44	15.9	44	66	7	200	28	19	26	25	1.99
44523893--44523962	27	2.6	27	93	2	113	31	27	12	28	1.93
44531360--44531417	29	2.0	29	100	0	116	48	13	0	37	1.43
44534162--44534236	29	2.6	29	78	4	80	21	36	21	21	1.96
44534220--44534293	29	2.6	29	95	0	139	27	31	14	27	1.95
44542095--44542168	29	2.6	29	95	0	139	27	31	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44542036--44542168	58	2.3	58	80	2	133	24	33	17	24	1.96
44549973--44550046	29	2.6	29	95	0	139	27	31	14	27	1.95
44549914--44550046	58	2.3	58	80	2	133	24	33	17	24	1.96
44557853--44557926	29	2.6	29	95	0	139	27	31	14	27	1.95
44557794--44557926	58	2.3	58	80	2	133	24	33	17	24	1.96
44561592--44561652	24	2.5	24	89	0	86	26	14	31	27	1.95
44568040--44568075	18	2.1	18	89	5	56	16	16	47	19	1.83
44570156--44570230	15	5.0	16	75	18	72	12	10	17	60	1.59
44570159--44570230	30	2.4	31	84	6	96	12	11	16	59	1.60
44574617--44574676	27	2.3	26	85	2	75	35	20	23	21	1.96
44574673--44574704	2	16.0	2	100	0	64	50	0	0	50	1.00
44576132--44576560	24	17.9	24	96	0	759	34	24	19	21	1.96
44584325--44584725	24	17.2	24	92	4	619	35	24	18	21	1.96
44586468--44586651	39	4.7	40	84	2	124	25	30	20	23	1.98
44586498--44586659	39	4.2	39	87	2	227	25	31	18	24	1.97
44586500--44586648	77	1.9	79	90	2	239	25	30	18	24	1.98
44594389--44594659	39	6.9	39	93	0	371	23	31	21	23	1.98
44594419--44594659	39	6.2	39	96	0	419	24	31	20	24	1.98
44596373--44596495	56	2.2	56	89	4	187	35	22	13	28	1.92
44597950--44598125	46	3.8	46	79	12	216	20	21	29	28	1.98
44597947--44598118	93	1.8	93	96	0	317	20	21	29	27	1.98
44605485--44605660	46	3.8	46	79	12	216	20	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44605482--44605653	93	1.8	93	96	0	317	20	21	29	27	1.98
44619257--44619301	20	2.3	20	81	14	58	44	4	4	46	1.43
44625538--44625635	47	2.1	47	94	0	169	34	5	6	54	1.48
44629854--44629914	27	2.2	28	94	5	108	29	18	0	52	1.45
44629893--44629959	24	2.8	24	80	10	75	16	16	0	67	1.24
44630501--44630530	15	2.0	15	100	0	60	26	13	26	33	1.93
44643478--44643580	23	4.5	23	97	0	188	36	29	21	12	1.90
44644474--44644516	22	2.0	20	82	8	50	55	6	16	20	1.64
44649380--44649563	79	2.3	80	80	4	185	23	30	24	20	1.98
44649456--44649563	40	2.7	40	86	0	135	21	30	25	23	1.99
44651717--44651884	40	4.2	40	80	3	196	25	22	27	25	2.00
44656961--44657035	29	2.6	29	78	4	80	21	36	21	21	1.96
44657019--44657092	29	2.6	29	95	0	139	27	31	14	27	1.95
44664837--44664911	29	2.6	29	78	4	80	21	36	21	21	1.96
44664895--44664968	29	2.6	29	95	0	139	27	31	14	27	1.95
44669328--44669364	17	2.2	16	90	4	56	13	0	8	78	0.96
44679583--44679620	19	2.0	20	85	15	53	39	23	0	36	1.55
44679845--44680016	46	3.7	46	77	13	192	30	27	20	22	1.98
44680439--44680498	30	2.0	30	86	0	84	33	25	5	36	1.78
44684854--44684891	19	2.0	20	85	15	53	39	23	0	36	1.55
44690263--44690287	5	5.0	5	100	0	50	20	0	20	60	1.37
44706859--44706896	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44711631--44711836	35	5.9	35	75	5	166	34	30	4	30	1.77
44711650--44711836	70	2.7	70	84	1	232	33	31	4	29	1.79
44711631--44711822	105	1.8	105	81	2	242	34	29	4	31	1.78
44712337--44712378	22	2.0	20	90	9	66	47	19	0	33	1.49
44715748--44715775	2	14.0	2	100	0	56	50	0	0	50	1.00
44717898--44717926	15	1.9	15	100	0	58	48	27	3	20	1.66
44719920--44720112	39	4.9	39	90	0	251	23	31	21	23	1.98
44719950--44720112	39	4.2	39	93	0	263	24	31	20	23	1.98
44727875--44727946	39	1.9	38	84	15	98	29	30	19	20	1.97
44727947--44728078	36	3.5	34	94	5	156	21	31	21	24	1.98
44727947--44728088	39	3.7	38	95	4	252	23	31	21	23	1.98
44729790--44729913	56	2.2	56	91	2	196	36	22	12	28	1.91
44731356--44731526	46	3.7	45	79	7	193	22	21	27	29	1.99
44731352--44731522	92	1.9	92	92	2	290	22	21	28	28	1.99
44732134--44732301	40	4.2	40	80	3	196	25	22	27	25	2.00
44740160--44740327	40	4.2	40	79	3	178	25	21	26	26	1.99
44740160--44740327	80	2.1	80	82	3	196	25	21	26	26	1.99
44742426--44742485	18	3.3	18	85	0	84	36	10	11	41	1.75
44742610--44742718	45	2.4	45	78	3	121	42	17	15	24	1.88
44742842--44742881	20	2.0	20	90	9	64	40	12	5	42	1.64
44742849--44742898	15	3.0	15	83	16	55	40	14	2	44	1.56
44743937--44744004	16	4.1	16	70	21	50	44	5	2	47	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44744088--44744122	9	3.8	9	92	3	52	22	0	0	77	0.78
44744088--44744126	9	4.2	9	86	3	51	25	0	0	74	0.82
44749116--44749204	18	4.9	18	84	0	106	38	12	8	40	1.74
44749331--44749437	45	2.4	45	81	6	128	40	15	18	25	1.90
44749419--44749453	18	1.9	18	100	0	70	42	11	22	22	1.85
44749574--44749625	16	2.9	16	74	20	50	40	13	1	44	1.55
44749585--44749634	15	3.0	15	83	16	55	40	14	2	44	1.56
44750512--44750547	19	1.9	18	88	5	54	0	22	2	75	0.94
44750669--44750736	16	4.1	16	70	21	50	45	5	1	47	1.36
44754845--44754921	36	2.1	35	88	6	118	44	6	23	25	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378