Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  17  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4590474--4590514
21
2.0
21
90
0
64
29
21
29
19
1.98
4597491--4597559
34
2.0
34
100
0
138
37
21
5
34
1.78
4600914--4600960
17
2.8
16
79
17
51
38
2
2
57
1.23
4614467--4614538
35
2.1
35
100
0
144
31
13
19
34
1.91
4618854--4618895
10
4.1
10
84
3
57
61
2
2
33
1.21
4618856--4618903
10
4.6
10
82
12
53
62
2
2
33
1.18
4618856--4618903
21
2.3
22
89
7
73
62
2
2
33
1.18
4619737--4619823
40
2.2
39
82
11
99
37
3
2
56
1.29
4624870--4624904
15
2.3
15
90
0
52
42
0
0
57
0.99
4626356--4626534
24
7.1
24
79
11
128
59
6
6
27
1.48
4626349--4626567
26
8.4
26
75
11
137
58
6
6
28
1.47
4626380--4626567
102
1.8
103
84
7
258
59
6
6
27
1.46
4626653--4626743
25
3.6
25
77
12
96
63
5
4
26
1.35
4626650--4626747
51
1.9
51
89
2
153
63
5
5
26
1.36
4628245--4628581
44
7.7
44
79
6
308
25
21
21
31
1.98
4628245--4628584
132
2.6
132
82
5
384
25
21
22
31
1.98
4638433--4638611
26
7.1
24
74
15
130
60
6
5
27
1.43
4638551--4638610
28
2.2
28
82
5
70
63
1
8
26
1.32
4638457--4638647
102
1.8
105
84
7
266
61
5
5
27
1.41
4638577--4638636
27
2.3
25
78
18
61
63
3
6
26
1.35
4638734--4638824
25
3.6
25
77
12
96
63
5
4
26
1.35
4638733--4638828
51
1.9
51
89
2
149
63
5
4
27
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4639991--4640026
12
3.0
12
84
15
56
16
0
27
55
1.42
4643434--4643480
25
2.0
25
83
8
62
27
14
4
53
1.60
4643741--4644090
46
8.0
46
83
10
437
22
24
15
37
1.93
4643785--4644090
84
3.5
85
90
5
447
22
24
16
36
1.94
4643920--4644079
38
4.0
38
86
12
230
23
25
18
33
1.96
4648629--4648742
54
2.1
55
98
1
221
17
9
3
69
1.30
4648805--4648843
18
2.1
19
85
4
53
33
0
0
66
0.92
4660157--4660199
19
2.3
19
84
4
52
34
20
4
39
1.74
4669488--4669525
5
7.4
5
83
16
51
0
18
0
81
0.69
4669476--4669526
6
8.7
6
77
18
54
1
17
0
80
0.81
4669476--4669525
11
4.4
11
83
16
66
2
18
0
80
0.82
4670156--4670300
30
4.8
30
85
1
159
27
46
4
21
1.69
4670881--4671023
25
5.6
25
71
14
85
33
6
4
55
1.44
4670875--4670990
29
4.2
28
74
11
87
32
5
5
56
1.43
4670891--4670968
31
2.5
31
81
6
79
32
5
3
58
1.38
4671180--4671227
16
3.1
15
90
6
69
31
2
2
64
1.16
4671180--4671231
8
6.5
8
82
8
61
30
1
1
65
1.14
4673244--4673701
46
10.0
46
93
1
683
22
22
13
41
1.89
4675842--4675893
11
4.7
11
76
9
52
63
3
0
32
1.12
4676530--4676560
12
2.6
12
100
0
62
25
25
6
41
1.79
4682151--4682316
35
4.6
35
82
8
172
31
10
24
33
1.90
4682151--4682321
75
2.4
75
85
7
221
31
11
23
33
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4689618--4689783
35
4.6
35
82
8
172
31
10
24
33
1.90
4689618--4689788
75
2.4
75
85
7
221
31
11
23
33
1.90
4695019--4695712
73
9.3
73
84
5
863
29
16
21
31
1.95
4695091--4695712
226
2.8
226
95
0
1084
29
16
21
31
1.96
4695019--4695712
300
2.3
294
87
5
966
29
16
21
31
1.95
4696265--4696439
30
5.8
30
87
1
235
26
48
4
20
1.67
4697001--4697155
25
6.0
25
71
14
91
32
7
5
54
1.49
4697001--4697147
27
5.6
27
74
9
99
32
7
5
54
1.51
4697023--4697100
31
2.5
31
81
6
79
32
5
3
58
1.38
4697313--4697360
16
3.1
15
90
6
69
31
2
2
64
1.16
4697313--4697364
8
6.5
8
82
8
61
30
1
1
65
1.14
4698519--4698559
19
2.0
21
86
9
59
39
9
0
51
1.35
4701400--4701472
37
2.0
38
86
10
107
43
15
10
30
1.80
4704562--4704923
48
7.6
47
77
9
286
27
28
18
25
1.98
4704561--4704941
96
4.0
96
84
3
448
28
28
17
25
1.98
4704560--4704923
144
2.5
143
80
8
373
27
28
18
25
1.98
4710281--4710388
54
1.9
56
90
5
175
25
2
20
50
1.61
4712491--4712530
17
2.2
18
91
8
64
60
0
0
40
0.97
4720771--4720831
29
2.1
29
96
0
113
39
18
21
21
1.93
4727680--4727728
18
2.7
18
96
0
89
61
4
16
18
1.50
4730969--4731310
178
1.9
178
88
3
519
39
16
12
31
1.86
4742548--4742592
3
15.0
3
100
0
90
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4747734--4747816
21
3.9
21
77
3
76
16
21
24
37
1.94
4748508--4748550
18
2.5
16
82
14
50
48
6
25
18
1.73
4755055--4755141
21
4.0
23
80
10
92
14
21
25
37
1.92
4758964--4759016
6
8.8
6
85
8
72
0
33
1
64
1.05
4758964--4759015
13
4.2
12
85
9
61
0
32
1
65
1.04
4758964--4759015
18
2.8
19
85
11
81
0
32
1
65
1.04
4759888--4760013
60
2.1
60
80
2
137
34
4
16
44
1.69
4767159--4767192
14
2.3
15
90
5
52
52
0
0
47
1.00
4770239--4770268
1
30.0
1
93
0
51
0
96
3
0
0.21
4771290--4771347
23
2.6
22
78
5
71
50
0
5
44
1.24
4779164--4779244
25
3.1
24
71
20
72
56
12
12
18
1.66
4782697--4782746
3
16.7
3
100
0
100
66
0
0
34
0.92
4783499--4783538
3
13.3
3
100
0
80
65
0
0
35
0.93
4784359--4784419
29
2.1
29
84
6
79
67
8
1
22
1.27
4785936--4786008
37
2.0
37
97
0
137
28
10
19
41
1.85
4789036--4789079
22
1.9
22
86
9
61
36
2
2
59
1.23
4790553--4790593
21
2.0
22
85
9
59
36
9
12
41
1.76
4799919--4799972
11
5.0
11
77
4
56
31
7
44
16
1.75
4804024--4804080
18
3.2
18
89
0
87
38
8
19
33
1.82
4804620--4804661
11
3.9
11
84
3
50
30
2
47
19
1.62
4805372--4805459
33
2.6
33
82
12
106
42
1
4
52
1.29
4805395--4805453
17
3.3
17
70
11
55
32
1
5
61
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4805444--4805479
19
1.9
19
88
5
56
58
2
2
36
1.27
4808427--4808455
5
5.8
5
100
0
58
20
17
20
41
1.90
4818458--4818530
28
2.5
28
77
18
78
57
9
0
32
1.31
4818457--4818526
30
2.3
29
85
11
88
57
10
0
32
1.32
4819234--4819778
273
2.0
272
86
3
765
31
18
18
31
1.95
4821531--4821583
26
2.1
26
82
10
65
56
11
11
20
1.65
4821753--4821783
16
2.0
15
93
6
53
29
0
0
70
0.87
4831708--4831737
15
1.9
16
93
6
53
76
6
3
13
1.11
4839626--4839719
18
5.4
18
92
3
131
36
25
9
28
1.87
4839626--4839706
9
9.0
9
70
0
54
34
27
9
28
1.89
4842085--4842173
21
4.1
21
84
5
90
53
10
23
12
1.68
4842085--4842153
21
3.3
21
87
2
95
55
8
24
11
1.64
4842925--4843129
43
4.8
43
83
3
261
26
28
20
24
1.99
4842926--4843129
86
2.4
85
94
2
354
26
27
20
25
1.99
4842883--4843143
129
2.0
128
82
6
314
26
24
21
27
1.99
4853759--4853886
7
18.1
7
73
7
80
37
39
0
22
1.54
4853914--4854002
46
1.9
46
95
0
160
41
24
4
29
1.74
4853968--4854021
7
7.7
7
78
0
54
50
25
0
24
1.50
4853929--4854013
21
3.9
21
70
11
71
43
25
3
27
1.71
4854178--4854345
41
4.1
41
93
2
268
17
21
23
37
1.94
4854283--4854409
62
2.0
63
86
6
177
14
22
22
40
1.90
4855371--4855402
5
6.6
5
92
7
57
81
0
0
18
0.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4855372--4855402
9
3.3
9
95
4
53
80
0
0
19
0.71
4856470--4856527
28
2.1
28
100
0
116
32
20
17
29
1.95
4859839--4859871
5
6.8
5
93
6
59
81
0
0
18
0.68
4859840--4859870
9
3.3
9
95
4
53
80
0
0
19
0.71
4859839--4859871
14
2.3
15
94
5
59
81
0
0
18
0.68
4860185--4860220
2
18.0
2
100
0
72
50
0
0
50
1.00
4861271--4861364
47
2.0
47
93
0
161
40
10
13
35
1.80
4867986--4868057
35
2.1
35
91
0
117
36
18
8
37
1.81
4869788--4869882
36
2.6
36
83
3
120
33
20
14
31
1.93
4869788--4869880
18
5.2
18
76
5
89
33
20
13
32
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378