Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  180  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52654811--52654860
27
1.9
26
84
8
66
42
10
14
34
1.78
52660871--52661230
45
8.1
45
89
3
487
24
20
27
27
1.99
52662891--52663023
46
2.8
45
83
8
160
26
19
30
23
1.98
52662992--52663171
99
1.8
96
82
12
233
29
18
27
24
1.98
52673268--52674617
683
2.0
683
99
0
2646
38
9
19
32
1.85
52674551--52674757
53
3.8
53
76
3
198
38
17
24
20
1.93
52682067--52682171
53
2.0
53
82
0
129
39
17
24
19
1.92
52685586--52685653
23
3.2
23
62
30
60
29
0
16
54
1.42
52685581--52685659
40
2.0
40
100
0
158
27
0
17
54
1.43
52686433--52686532
40
2.5
40
85
0
137
30
15
21
34
1.93
52690220--52690348
48
2.7
48
86
0
177
27
30
18
23
1.98
52691907--52692018
43
2.6
42
79
8
136
29
24
16
30
1.96
52694694--52694754
21
2.9
21
85
4
88
32
19
11
36
1.88
52694694--52694754
10
5.9
10
77
11
61
32
19
11
36
1.88
52696372--52696520
80
1.9
80
81
2
183
22
30
24
22
1.99
52696413--52696520
40
2.7
38
85
8
128
21
29
25
23
1.99
52703449--52703619
92
1.8
93
88
1
263
28
29
21
21
1.98
52703444--52703615
46
3.8
45
78
6
166
29
27
20
22
1.99
52703492--52703634
46
3.1
46
71
15
125
29
29
19
21
1.98
52707418--52707591
46
3.8
46
79
15
207
28
29
20
21
1.98
52707426--52707595
92
1.8
92
93
2
297
27
30
20
21
1.98
52707423--52707610
46
4.1
46
72
14
147
28
29
20
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52710236--52710402
40
4.2
40
79
3
185
25
20
27
26
1.99
52713529--52713555
6
4.5
6
100
0
54
33
37
0
29
1.58
52716147--52716199
11
5.0
11
79
6
65
30
20
13
35
1.91
52716139--52716199
21
2.9
21
85
4
88
32
19
11
36
1.88
52716139--52716199
10
5.9
10
77
11
61
32
19
11
36
1.88
52718863--52718888
12
2.2
12
100
0
52
23
38
30
7
1.83
52720396--52720758
181
2.0
182
99
0
719
32
18
21
27
1.96
52723938--52724100
40
4.1
40
79
6
177
24
21
28
25
1.99
52725470--52725683
40
5.3
40
80
8
195
28
14
23
32
1.95
52739141--52739427
48
5.9
48
73
8
208
30
17
26
26
1.97
52739181--52739422
96
2.5
95
83
5
306
29
17
26
26
1.98
52743296--52743344
13
3.8
13
100
0
98
36
0
22
40
1.54
52743692--52743734
21
2.0
22
86
4
61
27
9
20
41
1.83
52747241--52747348
26
4.2
26
84
7
148
34
8
21
36
1.83
52747242--52747344
52
2.0
52
90
3
163
34
8
21
34
1.84
52748525--52748554
16
1.9
15
93
6
51
53
23
20
3
1.60
52748970--52749163
27
7.2
26
82
9
237
18
23
23
35
1.96
52748970--52749163
54
3.6
54
92
1
327
18
23
23
35
1.96
52752743--52752874
29
4.6
29
84
1
149
25
16
32
25
1.96
52760156--52760443
24
12.1
24
95
2
474
35
25
18
20
1.96
52768210--52768500
24
12.1
24
97
0
501
35
25
18
20
1.95
52770753--52770878
43
2.9
43
84
2
137
34
28
15
22
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52774091--52774193
29
3.6
29
78
2
100
20
17
33
28
1.95
52782027--52782129
29
3.6
29
78
2
100
20
17
33
28
1.95
52793606--52793684
3
26.7
3
97
2
151
0
32
0
67
0.91
52795067--52795154
43
2.0
43
95
0
158
51
18
9
21
1.73
52795082--52795150
22
3.2
22
64
12
61
52
17
5
24
1.66
52801052--52801195
39
3.7
39
92
0
243
26
20
29
22
1.99
52801053--52801235
78
2.3
79
90
1
278
24
22
29
23
1.99
52809088--52809231
39
3.7
39
92
0
243
26
20
29
22
1.99
52809089--52809259
78
2.2
79
91
1
272
25
21
29
23
1.99
52814365--52814484
60
2.0
59
98
1
231
53
8
11
26
1.65
52815775--52815800
12
2.2
12
100
0
52
50
7
15
26
1.71
52829631--52829708
25
3.2
25
68
23
76
25
8
33
32
1.87
52829630--52830012
47
8.1
47
92
2
586
30
11
31
26
1.92
52829630--52830012
145
2.7
141
89
3
586
30
11
31
26
1.92
52829630--52830012
192
2.0
188
92
2
631
30
11
31
26
1.92
52830174--52830355
37
4.9
37
94
1
312
23
19
30
26
1.98
52830173--52830354
73
2.5
73
94
0
310
23
19
30
26
1.98
52831622--52831867
40
6.2
40
94
0
402
23
21
29
25
1.99
52835755--52836137
47
8.1
47
92
2
604
31
12
30
25
1.92
52835781--52835855
22
3.3
22
64
29
57
30
13
30
25
1.94
52835755--52836137
145
2.7
141
90
3
613
31
12
30
25
1.92
52835755--52836137
192
2.0
188
93
2
649
31
12
30
25
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52836301--52836520
37
5.9
37
92
0
359
23
17
30
27
1.97
52846066--52846217
39
3.9
39
92
1
252
23
21
32
23
1.98
52846067--52846247
39
4.6
39
89
1
247
23
22
31
22
1.98
52846073--52846272
78
2.6
78
84
4
206
23
22
31
23
1.98
52853322--52853474
39
3.9
39
91
2
236
24
20
32
23
1.98
52853323--52853504
39
4.6
39
88
2
231
24
21
31
23
1.98
52856006--52856090
27
3.1
27
91
0
134
28
22
8
41
1.82
52856093--52856222
27
4.8
27
77
5
84
40
21
10
27
1.85
52856123--52856246
27
4.6
27
81
6
135
42
21
7
28
1.79
52856143--52856301
54
2.9
54
80
4
149
42
18
8
31
1.79
52856224--52856309
27
3.1
27
76
17
95
39
16
9
34
1.80
52856350--52856423
27
2.7
27
78
12
80
37
21
20
20
1.94
52857209--52857278
25
2.8
25
89
4
97
27
22
22
27
1.99
52857234--52857305
25
3.0
24
80
13
76
29
22
22
26
1.99
52857498--52857575
31
2.5
31
97
2
149
28
17
26
26
1.98
52864635--52864751
46
2.5
46
87
2
153
29
17
28
24
1.97
52873228--52873345
29
4.1
29
86
3
168
31
32
12
23
1.92
52873234--52873341
57
1.9
57
90
3
173
30
35
12
22
1.90
52873404--52873436
17
2.0
17
88
5
50
21
45
18
15
1.85
52873555--52873608
16
3.4
16
81
0
63
9
22
22
46
1.80
52873555--52873591
8
4.6
8
86
0
56
2
21
24
51
1.61
52873555--52873608
24
2.2
24
86
0
72
9
22
22
46
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52877849--52877930
29
2.8
30
85
7
116
35
31
8
24
1.86
52878146--52878176
16
1.9
16
93
0
53
9
22
19
48
1.78
52879803--52879908
49
2.2
49
91
0
167
22
23
23
30
1.99
52879985--52880082
11
8.6
11
70
18
58
67
5
7
20
1.34
52879984--52880083
13
8.7
12
70
18
52
68
5
7
20
1.33
52879977--52880048
36
2.0
36
94
0
126
68
6
5
19
1.34
52882180--52882214
15
2.2
16
90
5
54
82
0
8
8
0.83
52893428--52893478
16
3.2
16
82
0
57
52
19
15
11
1.73
52893702--52893778
29
2.7
28
86
7
102
23
16
32
27
1.96
52896821--52896935
29
4.0
29
80
6
119
26
29
16
26
1.97
52897154--52897189
16
2.2
16
95
0
63
8
22
19
50
1.74
52901394--52901497
29
3.7
29
83
7
124
27
28
15
27
1.96
52901374--52901482
58
1.9
57
84
1
146
26
29
16
27
1.97
52901716--52901751
8
4.5
8
89
0
54
16
25
13
44
1.85
52901708--52901758
16
3.2
16
85
0
66
11
23
17
47
1.81
52909370--52909545
46
3.8
46
78
10
187
23
20
26
29
1.99
52914393--52914555
39
4.2
39
91
0
263
22
20
33
23
1.97
52914393--52914586
39
4.9
39
89
0
253
22
21
32
23
1.98
52922322--52922483
39
4.2
39
90
2
254
22
19
33
24
1.97
52922339--52922514
78
2.2
78
86
4
246
22
22
32
21
1.98
52927287--52927325
17
2.2
18
86
4
53
53
5
0
41
1.23
52930839--52930864
13
2.0
13
100
0
52
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52931440--52931482
12
3.4
12
78
12
50
72
4
0
23
1.04
52931595--52931650
30
1.9
28
89
7
85
55
0
0
44
0.99
52936767--52937021
55
4.8
53
77
8
218
37
16
24
22
1.93
52937212--52937242
16
1.9
16
93
0
53
41
0
22
35
1.54
52939951--52940068
42
2.8
43
80
2
132
27
16
26
29
1.97
52943246--52943417
93
1.8
93
96
0
317
27
30
22
20
1.98
52943238--52943413
46
3.8
46
81
10
232
28
29
21
20
1.98
52945729--52945848
57
2.1
58
84
4
154
49
8
15
26
1.73
52945837--52945862
13
2.0
13
100
0
52
69
0
15
15
1.20
52945765--52945875
57
1.9
57
83
7
145
51
8
14
26
1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378