genome.fa.s1.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  125  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35021662--35021697	1	36.0	1	100	0	72	100	0	0	0	0.00
35025814--35025959	40	3.7	40	84	0	175	24	27	21	26	2.00
35025846--35025997	40	3.8	40	84	5	164	23	25	22	28	1.99
35033095--35033240	40	3.7	40	84	0	175	24	27	21	26	2.00
35033127--35033278	40	3.8	40	84	5	164	23	25	22	28	1.99
35037328--35037442	40	2.9	40	87	5	160	27	21	26	23	1.99
35037286--35037472	40	4.7	39	77	9	148	29	21	25	23	1.99
35040572--35040707	9	15.6	9	68	14	54	36	1	17	44	1.58
35040586--35040692	43	2.5	43	86	3	137	36	0	16	45	1.54
35040669--35040712	18	2.6	17	82	10	54	36	2	15	45	1.59
35040675--35040712	18	2.2	17	90	4	58	39	2	15	42	1.61
35044762--35044845	40	2.1	40	88	0	123	29	21	16	32	1.95
35045836--35045897	7	8.7	7	76	3	52	46	25	3	24	1.67
35045839--35045878	15	2.7	15	88	3	64	45	32	5	17	1.70
35046011--35046075	7	9.1	7	73	9	60	16	3	36	43	1.64
35046236--35046270	17	2.0	17	88	5	52	65	14	0	20	1.26
35046413--35046529	41	2.9	41	85	2	155	20	19	20	39	1.93
35081381--35081498	41	3.1	41	60	28	98	32	17	28	21	1.96
35081349--35081512	71	2.3	71	100	0	328	35	17	28	18	1.94
35088950--35089067	41	3.1	41	60	28	98	32	17	28	21	1.96
35088918--35089081	71	2.3	71	100	0	328	35	17	28	18	1.94
35096521--35096638	41	3.1	41	60	28	98	32	17	28	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35096489--35096652	71	2.3	71	100	0	328	35	17	28	18	1.94
35099583--35099732	40	3.8	40	75	15	125	27	23	26	22	2.00
35099620--35099748	40	3.2	40	75	6	129	24	23	27	24	2.00
35107608--35107709	40	2.5	40	85	0	123	29	21	26	22	1.99
35107647--35107775	40	3.2	40	83	6	154	24	21	27	26	1.99
35111549--35111617	30	2.3	30	94	0	120	11	36	26	26	1.90
35112417--35112449	13	2.6	13	90	4	50	48	12	0	39	1.40
35115341--35115413	5	14.8	5	74	18	57	75	0	4	20	0.97
35120234--35120423	27	7.3	27	79	11	191	30	23	6	38	1.81
35120293--35120384	46	2.0	46	89	0	139	35	19	5	39	1.75
35120266--35120406	73	1.9	73	91	0	228	34	21	5	38	1.77
35120239--35120419	100	1.8	100	87	2	274	31	22	6	39	1.80
35120455--35120578	27	4.6	27	89	3	187	41	22	8	28	1.82
35120422--35120577	54	2.9	54	84	3	172	39	20	10	28	1.86
35120455--35120691	54	4.4	54	76	9	178	40	20	8	30	1.81
35120455--35120604	81	1.9	81	83	5	196	42	22	7	28	1.80
35120480--35120691	110	1.9	108	81	1	253	41	20	8	30	1.81
35120455--35120669	27	7.9	27	80	8	157	40	20	7	31	1.81
35120722--35120786	27	2.4	27	82	5	78	35	18	24	21	1.96
35121597--35121666	25	2.8	25	93	0	113	25	27	22	24	2.00
35121596--35121679	25	3.4	24	83	8	98	28	23	22	25	1.99
35121597--35121691	50	1.9	50	80	8	113	27	25	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35121813--35121904	42	2.2	42	90	0	139	30	13	21	34	1.91
35121928--35122011	31	2.7	31	96	1	152	27	17	27	27	1.98
35124329--35124361	13	2.6	13	90	4	50	48	12	0	39	1.40
35125938--35126195	46	5.5	45	81	9	243	24	30	17	27	1.97
35125938--35126195	140	1.8	140	85	3	358	24	30	17	27	1.97
35130465--35130565	28	3.5	28	86	6	114	28	13	27	29	1.95
35130494--35130565	29	2.5	28	91	6	110	29	13	27	29	1.95
35133564--35133839	126	2.2	125	90	1	437	45	4	9	40	1.57
35133564--35133942	122	3.0	126	81	8	363	44	5	9	40	1.59
35135014--35135179	40	4.2	40	91	0	262	25	27	22	23	2.00
35136621--35136663	14	3.1	14	80	6	52	58	9	2	30	1.42
35136621--35136659	13	2.9	13	84	3	51	58	10	2	28	1.44
35140814--35140903	33	2.7	33	92	0	144	21	26	23	28	1.99
35140816--35140916	33	3.2	31	86	6	109	19	24	26	28	1.99
35141799--35141837	18	2.2	18	86	9	53	23	41	23	12	1.88
35152319--35152626	49	6.4	49	91	2	507	29	29	7	33	1.85
35156748--35156799	26	2.0	26	100	0	104	38	34	11	15	1.83
35157195--35157222	13	2.2	13	100	0	56	39	0	0	60	0.97
35160767--35160811	23	1.9	24	90	4	74	22	2	51	24	1.60
35161943--35162024	42	2.0	42	90	0	128	20	30	29	19	1.97
35164456--35164491	2	18.0	2	94	0	63	0	47	0	52	1.00
35167194--35167232	2	19.5	2	100	0	78	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35170899--35170963	33	2.0	33	93	0	112	21	9	38	30	1.85
35175223--35175276	3	18.0	3	80	0	63	29	1	40	27	1.67
35183123--35183266	42	3.7	42	72	21	159	50	4	2	42	1.35
35183104--35183259	72	2.2	73	92	1	260	51	4	1	42	1.33
35183245--35183269	12	2.1	12	100	0	50	56	0	0	44	0.99
35188886--35189196	39	8.0	39	89	0	478	23	29	25	21	1.99
35191776--35191951	46	3.8	45	78	12	205	21	21	28	28	1.98
35191773--35191943	93	1.8	93	93	2	299	21	21	29	27	1.99
35193895--35194025	47	2.8	46	81	2	154	31	25	17	25	1.97
35209014--35209091	28	2.7	29	72	2	77	19	21	21	37	1.95
35211718--35211858	50	2.8	50	82	3	178	29	28	17	24	1.97
35214591--35214665	23	3.2	23	69	3	78	46	22	12	18	1.82
35219900--35220034	51	2.7	49	80	4	164	28	28	18	24	1.98
35219894--35220027	49	2.7	49	82	4	153	29	26	19	25	1.99
35222790--35222837	25	2.0	24	87	4	69	43	16	12	27	1.84
35229093--35229264	43	4.0	43	87	0	245	30	25	16	27	1.97
35235101--35235181	28	2.9	27	85	3	99	33	9	27	29	1.89
35240553--35240724	46	3.7	46	79	13	208	27	28	22	21	1.99
35240558--35240728	93	1.8	93	94	0	306	27	29	22	21	1.99
35241144--35241203	30	2.0	30	90	0	93	30	25	8	36	1.85
35248111--35248279	91	1.9	91	96	0	311	28	28	21	20	1.98
35248106--35248276	46	3.7	46	81	10	224	29	28	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35248108--35248295	46	4.1	45	75	16	154	28	28	21	21	1.98
35248696--35248755	30	2.0	30	90	0	93	30	25	8	36	1.85
35259010--35259140	29	4.5	29	88	1	183	26	16	30	25	1.97
35263037--35263175	39	3.5	39	79	8	140	25	25	27	21	1.99
35262984--35263200	79	2.7	78	79	7	181	25	23	27	23	2.00
35273334--35273464	29	4.5	29	84	0	154	25	16	32	25	1.96
35288974--35289180	53	3.8	54	79	1	227	20	23	17	38	1.93
35295952--35296112	29	5.6	29	87	1	207	25	16	32	26	1.96
35303461--35303621	29	5.6	29	87	1	207	25	16	32	26	1.96
35306760--35306797	12	3.2	12	92	0	58	47	10	18	23	1.79
35306780--35306850	31	2.3	31	92	0	115	52	12	11	23	1.72
35306981--35307082	27	3.8	26	87	5	123	36	20	23	19	1.95
35307240--35307301	22	2.9	21	85	7	79	35	22	20	20	1.96
35307731--35308379	27	23.3	27	84	9	779	24	22	20	32	1.98
35307731--35308379	53	11.6	54	87	7	779	24	22	20	32	1.98
35307809--35307877	36	1.9	36	96	0	129	24	20	23	31	1.98
35307846--35308379	80	6.4	81	84	9	673	24	22	20	32	1.98
35308006--35308136	36	3.9	36	80	18	183	25	20	22	32	1.98
35308361--35308480	54	2.2	54	82	2	152	27	10	23	39	1.86
35308105--35308433	80	4.1	80	86	5	319	25	20	20	33	1.97
35308364--35308479	27	4.3	27	82	4	126	26	8	24	40	1.84
35308391--35308503	54	2.1	54	83	0	136	29	7	23	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35308484--35308692	27	7.7	27	86	0	229	40	8	20	31	1.81
35308491--35308692	81	2.5	81	86	0	260	41	8	20	30	1.82
35308491--35308715	81	2.8	81	82	1	200	40	8	20	30	1.83
35308700--35308827	27	4.7	27	84	1	141	34	8	19	37	1.82
35310378--35310548	93	1.8	93	93	0	297	27	29	21	21	1.99
35310370--35310545	46	3.8	46	80	10	205	28	28	21	21	1.98
35313776--35313947	40	4.3	40	82	6	199	23	20	27	27	1.99
35313776--35313947	80	2.2	79	86	7	233	23	20	27	27	1.99
35314175--35314216	22	1.9	22	85	9	59	33	9	14	42	1.78
35321009--35321078	27	2.5	28	93	2	115	27	14	28	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378