genome.fa.s1.2.7.7.80.10.50.1000.215.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  215  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63883969--63884200	49	4.7	49	82	2	266	25	17	26	29	1.98
63883978--63884200	101	2.2	100	82	3	245	26	17	26	29	1.97
63886656--63886753	49	2.0	49	95	0	178	42	21	6	29	1.77
63890050--63890217	40	4.2	40	79	3	160	23	26	23	27	2.00
63890066--63890215	80	1.9	80	83	8	198	22	26	24	27	1.99
63898053--63898220	40	4.2	40	79	3	160	23	26	23	27	2.00
63898069--63898218	80	1.9	80	83	8	198	22	26	24	27	1.99
63901838--63901946	20	5.4	20	82	8	125	38	21	7	33	1.81
63901838--63901964	40	3.2	40	83	6	134	39	19	7	33	1.81
63901894--63901964	20	3.5	20	84	0	88	39	16	9	33	1.82
63901930--63901993	20	3.2	20	79	0	65	39	18	6	35	1.76
63901895--63901986	40	2.3	40	81	7	98	39	16	8	35	1.79
63902161--63902309	22	6.6	22	82	12	169	33	19	21	25	1.97
63902160--63902309	67	2.2	67	81	12	173	34	19	21	25	1.96
63903661--63903886	104	2.2	104	91	3	366	19	25	33	21	1.97
63905197--63905248	23	2.3	23	80	9	63	28	25	13	32	1.93
63905548--63905656	50	2.1	52	83	6	134	41	14	13	30	1.85
63907285--63907349	18	3.6	18	80	12	71	12	26	0	61	1.31
63924511--63924565	27	2.0	27	100	0	110	20	29	14	36	1.92
63925176--63925204	12	2.4	12	100	0	58	37	37	0	24	1.56
63931823--63931861	16	2.7	15	88	11	55	76	0	5	17	0.96
63935422--63935464	18	2.4	18	92	0	68	11	13	4	69	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63937711--63937772	32	1.9	32	96	0	115	38	22	9	29	1.86
63939207--63939252	23	2.0	23	95	0	83	36	13	10	39	1.79
63939592--63939625	7	4.6	7	89	10	50	29	2	0	67	1.05
63951156--63951242	37	2.3	36	94	5	147	26	33	19	20	1.97
63951306--63951885	49	12.2	49	81	10	406	29	30	9	31	1.88
63951291--63951898	98	5.9	98	77	13	511	29	30	9	31	1.88
63951416--63951669	129	2.0	129	96	0	463	27	31	10	30	1.90
63951465--63951620	80	2.0	80	100	0	312	26	32	10	30	1.90
63951550--63951896	49	7.1	49	92	0	550	28	29	9	32	1.89
63955740--63955922	79	2.3	79	91	1	296	25	28	22	24	1.99
63955772--63955947	79	2.2	79	87	5	257	28	27	21	22	1.99
63955740--63955922	40	4.6	40	93	2	298	25	28	22	24	1.99
63955931--63956043	40	2.8	40	81	6	122	26	27	20	25	1.99
63955742--63956036	119	2.5	118	79	8	289	27	28	20	23	1.99
63957901--63957987	37	2.3	36	94	5	147	26	33	19	20	1.97
63958051--63958630	49	12.2	49	81	10	406	29	30	9	31	1.88
63958036--63958643	98	5.9	98	77	13	511	29	30	9	31	1.88
63958161--63958414	129	2.0	129	96	0	463	27	31	10	30	1.90
63958210--63958365	80	2.0	80	100	0	312	26	32	10	30	1.90
63958295--63958641	49	7.1	49	92	0	550	28	29	9	32	1.89
63961406--63961612	53	3.8	53	74	6	184	21	25	16	36	1.94
63966545--63966595	16	3.4	16	74	20	65	74	3	0	21	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63966525--63966611	28	3.8	22	75	20	72	71	5	0	22	1.07
63966567--63966611	21	2.1	22	91	4	58	73	6	0	20	1.05
63966536--63966600	28	2.3	28	97	2	121	75	4	0	20	0.98
63966658--63966690	15	2.1	16	88	11	50	69	0	0	30	0.88
63968329--63968467	27	5.2	27	87	2	201	23	13	21	41	1.88
63968333--63968467	53	2.5	53	90	1	198	22	14	21	41	1.89
63972041--63972154	26	4.3	26	85	2	147	25	16	19	38	1.92
63974459--63974645	12	15.2	12	73	14	132	49	14	18	17	1.79
63974468--63974595	37	3.5	37	82	6	136	50	14	18	17	1.79
63974516--63974582	25	2.7	25	90	0	107	49	14	17	17	1.80
63974480--63974645	62	2.7	61	89	1	260	49	14	18	17	1.80
63974541--63974619	37	2.1	37	90	0	122	49	15	18	16	1.80
63974566--63974645	25	3.2	25	85	5	101	50	15	18	16	1.79
63975157--63975325	27	6.3	27	79	2	160	26	18	18	36	1.95
63975157--63975325	54	3.1	53	82	3	212	26	18	18	36	1.95
63975173--63975352	81	2.2	79	83	5	209	26	15	20	37	1.92
63975283--63975444	54	3.0	54	83	1	209	28	9	22	38	1.86
63975307--63975434	27	4.7	27	81	0	148	27	9	24	39	1.86
63977411--63977547	6	22.3	6	72	15	102	49	12	17	20	1.78
63977444--63977509	25	2.6	25	87	0	96	48	10	19	21	1.79
63977437--63977547	31	3.6	31	76	13	129	48	12	18	20	1.80
63977468--63977546	37	2.1	37	85	0	104	49	13	17	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63978059--63978227	27	6.3	27	81	1	178	24	18	18	37	1.93
63978073--63978221	81	1.8	81	89	0	235	24	18	19	36	1.94
63978072--63978254	81	2.3	80	84	4	233	25	16	19	37	1.93
63978209--63978335	27	4.7	27	85	0	173	29	8	22	39	1.84
63978158--63978343	54	3.4	54	82	4	207	27	12	22	37	1.90
63983855--63984073	40	5.5	38	85	5	208	22	26	24	26	2.00
63983841--63984074	80	2.9	77	80	4	234	22	26	24	26	2.00
63991943--63992160	40	5.5	39	84	6	242	22	26	24	26	2.00
63991971--63992161	40	4.8	40	87	1	249	24	27	23	25	2.00
63991970--63992161	79	2.4	81	84	2	262	23	27	23	25	2.00
63994991--63995134	40	3.6	40	79	5	150	27	24	27	20	1.99
63995028--63995157	40	3.2	40	82	4	165	23	24	28	23	2.00
63998139--63998301	23	7.1	24	85	10	216	38	25	14	21	1.92
63998145--63998301	70	2.3	66	88	7	226	37	26	14	21	1.92
64006011--64006181	24	7.1	24	95	0	288	36	25	17	21	1.95
64009274--64009318	22	2.0	22	91	0	72	37	11	13	37	1.80
64010379--64010423	16	2.7	16	86	6	54	26	0	31	42	1.56
64017862--64018124	48	5.6	48	84	6	285	25	18	28	26	1.98
64018050--64018151	40	2.5	40	81	9	116	26	18	31	23	1.98
64039732--64039799	28	2.4	28	85	0	91	29	11	26	32	1.92
64041496--64041563	31	2.2	31	83	2	82	20	32	27	19	1.97
64046494--64046536	21	2.0	21	100	0	86	9	32	18	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64047331--64047367	18	2.1	17	95	5	65	27	13	10	48	1.75
64048052--64048076	11	2.3	11	100	0	50	88	0	12	0	0.53
64050066--64050325	49	5.4	49	92	2	370	33	7	30	28	1.85
64050072--64050325	47	5.3	47	92	0	355	33	7	30	28	1.86
64053638--64053845	40	5.2	40	84	0	218	25	22	25	25	2.00
64053639--64053845	80	2.6	80	83	4	247	25	22	26	25	2.00
64057747--64057832	43	2.0	43	82	13	106	26	29	19	24	1.99
64061887--64062094	40	5.2	40	88	1	285	27	28	20	23	1.99
64069867--64069900	2	17.0	2	87	0	50	50	2	2	44	1.32
64070544--64070617	29	2.6	29	89	4	105	25	16	32	25	1.96
64088472--64088586	44	2.5	46	83	6	146	24	28	19	27	1.98
64091955--64092002	23	2.1	23	84	0	60	37	2	10	50	1.49
64092169--64092223	25	2.2	25	93	0	92	25	23	23	27	2.00
64097034--64097271	118	2.0	116	97	1	449	41	7	23	27	1.81
64098018--64098067	17	3.2	16	81	10	59	76	0	8	16	1.02
64101847--64102048	49	4.1	49	96	0	359	33	8	27	30	1.87
64102117--64102204	38	2.3	37	92	7	142	20	19	32	27	1.97
64104015--64104096	39	2.1	39	93	0	137	30	20	15	32	1.94
64108406--64108595	40	4.8	40	90	3	278	23	23	27	25	2.00
64110967--64111006	20	1.9	22	85	10	57	47	0	10	42	1.37
64113548--64113585	20	1.9	20	88	0	58	26	13	28	31	1.93
64113576--64113714	60	2.3	60	82	8	167	28	20	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64124851--64124881	12	2.6	12	94	0	53	29	19	16	35	1.93
64128094--64128141	25	1.9	25	86	0	69	33	25	16	25	1.96
64128185--64128223	20	2.0	20	94	0	69	35	12	23	28	1.91
64128274--64128416	24	6.0	24	91	4	209	28	22	22	26	1.99
64128274--64128416	47	3.0	47	90	5	207	28	22	22	26	1.99
64128274--64128417	71	2.0	72	89	4	220	29	22	22	26	1.99
64128608--64128671	31	2.1	31	96	0	119	39	15	21	23	1.92
64132958--64133009	24	2.2	24	85	0	68	53	5	3	36	1.43
64134931--64134982	24	2.2	24	85	0	68	57	9	1	30	1.42
64135903--64135935	2	16.5	2	100	0	66	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378