Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  370  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110622470--110622535
33
2.0
33
93
0
114
48
15
6
30
1.69
110627060--110627102
21
2.0
21
95
0
77
18
18
37
25
1.94
110629785--110629881
33
2.9
33
80
11
85
61
2
1
35
1.14
110629811--110629881
34
2.1
33
84
7
90
61
2
0
35
1.10
110629846--110629902
10
6.0
10
76
12
50
68
1
1
28
1.09
110629846--110629902
17
3.0
19
80
10
64
68
1
1
28
1.09
110629956--110629998
19
2.3
19
84
8
52
67
4
2
25
1.22
110630442--110630611
9
17.8
9
66
16
58
33
1
4
60
1.25
110630501--110630562
21
3.0
21
84
13
67
35
0
4
59
1.19
110630527--110630610
19
4.3
19
74
16
66
38
0
2
59
1.10
110630517--110630585
31
2.2
30
80
16
79
36
0
1
62
1.04
110630516--110630576
22
2.9
20
83
11
61
37
0
1
60
1.07
110630528--110630611
9
8.6
10
71
17
61
38
0
2
59
1.10
110633341--110633374
12
2.8
12
86
0
50
35
38
17
8
1.81
110645609--110645761
80
1.9
80
98
0
297
16
11
15
56
1.66
110648328--110648372
13
3.5
13
84
0
54
60
2
2
35
1.22
110649367--110649416
19
2.6
20
75
9
59
58
4
0
38
1.17
110650625--110650671
21
2.3
20
76
16
53
51
0
0
48
1.00
110653907--110653951
23
2.0
23
86
8
65
33
24
0
42
1.55
110655660--110655724
24
2.6
25
82
2
78
24
1
4
69
1.16
110658190--110658265
23
3.3
23
77
21
63
57
1
5
35
1.29
110661210--110661241
10
3.1
11
91
8
50
56
0
0
43
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110663886--110663925
19
2.1
19
90
0
62
12
25
2
60
1.45
110668866--110668982
23
5.0
23
70
12
85
32
22
27
17
1.97
110669044--110669103
25
2.5
22
82
12
66
33
23
30
13
1.93
110671149--110671185
18
2.1
18
89
0
56
56
8
0
35
1.29
110676060--110676093
5
6.8
5
96
0
50
32
0
0
67
0.91
110679841--110679869
3
9.7
3
100
0
58
31
0
0
68
0.89
110680988--110681047
3
20.0
3
100
0
120
66
0
0
33
0.92
110681377--110681439
26
2.4
27
80
15
71
50
3
11
34
1.54
110681471--110681521
23
2.3
22
86
3
66
54
5
3
35
1.43
110681717--110681771
27
2.2
25
83
9
67
56
7
5
30
1.49
110682003--110682045
16
2.6
17
82
14
54
60
2
4
32
1.30
110682334--110682369
15
2.5
15
90
4
56
61
2
8
27
1.39
110682372--110682406
19
1.9
18
88
11
54
57
2
8
31
1.44
110683079--110683119
17
2.5
17
84
11
50
29
0
7
63
1.21
110685042--110685066
13
1.9
13
100
0
50
48
8
8
36
1.62
110687498--110687679
91
2.0
91
94
0
319
27
18
13
40
1.88
110691855--110691963
51
2.1
52
91
5
177
33
4
24
36
1.76
110691855--110691963
26
4.2
26
95
2
175
33
4
24
36
1.76
110693398--110693471
25
2.8
25
83
6
76
35
21
10
32
1.88
110697628--110697761
26
5.2
26
95
1
227
33
4
24
37
1.76
110699201--110699271
26
2.7
26
84
4
79
35
22
11
30
1.89
110699379--110699490
27
4.1
27
80
3
109
17
23
22
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110699379--110699490
54
2.1
54
84
3
145
17
23
22
36
1.95
110699552--110699591
19
2.0
22
85
14
59
17
2
47
32
1.61
110704294--110704324
13
2.4
13
100
0
62
35
6
0
58
1.24
110704826--110704854
2
15.0
2
92
7
51
48
0
0
51
1.00
110705330--110705374
23
2.0
23
86
0
63
64
0
4
31
1.13
110707879--110707953
37
2.0
37
94
0
132
30
18
16
34
1.93
110711723--110711754
3
10.7
3
100
0
64
68
0
0
31
0.90
110711750--110711785
4
9.0
4
87
0
54
69
0
5
25
1.10
110711924--110711993
3
23.3
3
100
0
140
67
0
0
32
0.91
110712063--110712119
3
19.0
3
76
7
53
57
1
7
33
1.36
110712382--110712433
14
3.6
14
79
10
61
63
1
5
28
1.28
110714237--110714290
5
11.0
5
79
18
60
18
0
1
79
0.82
110714237--110714290
9
5.5
10
79
16
60
18
0
1
79
0.82
110714235--110714290
19
2.8
21
76
15
64
19
0
1
78
0.84
110714262--110714295
15
2.2
16
89
5
52
20
0
0
79
0.73
110722169--110722360
96
2.0
95
87
3
278
39
9
13
38
1.77
110725590--110725651
30
2.1
30
100
0
124
40
12
12
33
1.82
110726140--110726224
41
2.1
41
100
0
170
36
7
14
42
1.72
110726809--110726921
47
2.4
47
83
0
154
36
21
11
30
1.89
110749897--110749944
17
2.8
16
78
12
51
35
2
2
60
1.20
110754061--110754109
24
2.0
24
100
0
98
32
4
14
48
1.62
110754617--110754665
25
2.0
25
87
0
71
40
0
14
44
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110755061--110755147
43
2.0
43
86
0
120
54
0
21
24
1.45
110756846--110756896
19
2.9
17
83
11
66
37
9
17
35
1.83
110756868--110756922
22
2.5
23
82
5
60
34
7
18
40
1.78
110760268--110760314
22
2.1
22
96
0
85
23
25
34
17
1.96
110761018--110761357
169
2.0
169
98
0
662
28
21
27
22
1.99
110763440--110763470
15
2.1
15
100
0
62
54
12
0
32
1.38
110769684--110769744
31
2.0
31
90
0
95
47
8
4
39
1.55
110771516--110771541
2
13.0
2
100
0
52
50
0
0
50
1.00
110773305--110773348
22
2.0
22
86
0
61
52
0
0
47
1.00
110773423--110773479
15
3.5
15
71
17
51
49
1
1
47
1.22
110775438--110775483
24
1.9
24
82
8
58
71
4
6
17
1.24
110775567--110775686
29
4.1
28
66
19
68
63
1
7
27
1.31
110775564--110775611
15
3.1
15
90
6
69
62
0
8
29
1.24
110775561--110775645
44
1.9
44
86
13
122
62
0
8
29
1.24
110775561--110775674
15
7.9
14
72
17
65
63
0
7
28
1.28
110781142--110781170
9
3.2
9
100
0
58
24
0
34
41
1.55
110782293--110782322
5
5.8
5
92
7
51
80
0
0
20
0.72
110786927--110786960
5
6.8
5
100
0
68
0
17
0
82
0.67
110798515--110798735
107
2.1
107
85
2
293
31
18
12
37
1.88
110799361--110799428
29
2.3
29
73
14
68
58
4
1
35
1.27
110799527--110799562
17
2.1
18
89
5
56
41
2
2
52
1.30
110799549--110799580
13
2.4
14
85
15
50
25
6
6
62
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110802253--110802285
3
11.0
3
100
0
66
33
0
0
66
0.92
110802930--110803181
131
1.9
133
81
4
305
26
19
18
35
1.95
110802898--110803426
132
4.0
133
74
7
416
27
18
18
35
1.94
110805352--110805381
11
2.7
11
89
0
51
60
0
0
40
0.97
110806100--110806129
12
2.5
12
100
0
60
46
0
43
10
1.37
110806168--110806259
36
2.6
35
88
8
143
3
6
16
73
1.17
110818524--110818558
12
2.9
12
100
0
70
25
22
25
25
2.00
110820938--110820971
15
2.3
15
89
0
50
35
14
2
47
1.60
110821298--110821397
50
2.0
50
96
0
182
44
10
13
33
1.76
110834840--110834870
16
1.9
16
100
0
62
45
3
0
51
1.17
110836034--110836084
22
2.2
24
86
10
79
47
0
7
45
1.32
110837185--110837209
12
2.1
12
100
0
50
48
0
8
44
1.32
110839252--110839286
18
2.1
17
89
10
54
45
2
14
37
1.59
110844233--110844265
10
3.4
10
87
4
50
48
9
3
39
1.50
110860188--110860219
12
2.7
12
100
0
64
15
0
34
50
1.45
110865543--110865607
29
2.3
29
78
7
71
15
10
0
73
1.08
110866529--110867036
192
2.6
191
92
0
845
32
20
16
30
1.95
110873070--110873117
19
2.6
18
90
9
78
72
0
10
16
1.10
110874005--110874052
15
3.1
16
83
16
57
70
2
0
27
0.98
110873996--110874066
11
6.5
11
76
12
58
66
2
1
29
1.15
110878274--110878321
19
2.6
18
90
9
78
72
0
10
16
1.10
110879208--110879255
15
3.1
16
83
16
57
70
2
0
27
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110879199--110879269
11
6.5
11
76
12
58
66
2
1
29
1.15
110880955--110881048
49
1.9
49
91
0
152
43
10
24
21
1.84
110886203--110886246
19
2.2
20
88
8
72
34
0
18
47
1.49
110889604--110889694
30
3.0
30
67
17
80
29
2
42
25
1.67
110889578--110889694
60
2.0
60
91
0
189
29
2
41
26
1.69
110892086--110892143
28
2.1
28
100
0
116
24
17
10
48
1.78
110893766--110893831
19
3.3
20
80
18
75
27
3
3
66
1.21
110897086--110897126
17
2.4
17
91
0
64
48
2
12
36
1.54
110903310--110903347
13
2.7
14
88
8
51
52
0
0
47
1.00
110903538--110903618
18
4.4
19
66
16
53
46
1
2
49
1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378