genome.fa.s1.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  114  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31824604--31824774	40	4.3	40	79	5	186	26	21	25	26	2.00
31827527--31827574	2	24.5	2	95	4	89	47	0	0	52	1.00
31828040--31828163	39	3.2	39	90	0	194	21	20	29	27	1.98
31828040--31828199	39	4.1	39	86	1	187	21	21	28	27	1.99
31831711--31831793	42	2.0	42	90	0	130	33	14	21	30	1.93
31837389--31837440	27	2.0	26	84	3	68	17	26	21	34	1.95
31844748--31844807	27	2.3	26	85	2	75	21	23	20	35	1.96
31848276--31848370	45	2.1	45	98	1	183	38	4	16	40	1.68
31849320--31849347	2	14.0	2	100	0	56	50	0	0	50	1.00
31855625--31855789	46	3.6	45	79	11	147	21	29	20	28	1.98
31858219--31858275	9	5.9	9	73	15	51	35	8	21	35	1.84
31858217--31858279	20	3.2	20	95	0	117	36	12	19	31	1.89
31858334--31858431	47	2.1	47	90	5	153	31	20	20	27	1.97
31858333--31858452	24	5.0	24	85	10	156	30	20	21	26	1.98
31858645--31858707	30	2.1	31	87	3	92	36	14	23	25	1.93
31866171--31866218	25	1.9	25	86	0	69	33	25	16	25	1.96
31866257--31866313	9	5.9	9	73	15	51	35	8	21	35	1.84
31866255--31866317	20	3.2	20	95	0	117	36	12	19	31	1.89
31866371--31866465	24	4.0	24	87	6	131	30	20	21	28	1.98
31866658--31866721	31	2.1	31	90	0	101	35	17	23	23	1.95
31871291--31871367	21	3.8	21	83	8	106	36	12	29	20	1.90
31874663--31874700	19	2.1	18	85	14	51	13	2	2	81	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31882116--31882221	51	2.1	51	85	3	142	36	16	6	39	1.75
31888597--31888880	50	5.8	50	80	8	300	26	17	30	25	1.98
31888611--31888788	95	1.9	95	90	4	288	26	19	29	24	1.98
31892815--31892852	19	2.0	19	100	0	76	42	5	15	36	1.70
31893064--31893302	50	4.9	50	84	8	285	29	18	27	24	1.98
31893064--31893345	95	2.9	95	83	5	314	28	18	28	25	1.98
31894574--31894626	26	2.0	26	100	0	106	41	26	3	28	1.73
31895897--31896072	47	3.7	47	76	11	162	22	28	22	26	1.99
31895897--31896070	96	1.8	96	82	7	228	22	28	21	26	1.99
31902752--31902850	30	3.3	30	100	0	198	24	39	24	12	1.89
31902774--31902827	17	3.4	17	65	19	53	25	40	22	11	1.87
31903685--31903796	46	2.5	45	82	10	122	27	30	15	26	1.96
31904632--31904725	47	2.0	47	97	0	179	25	18	6	50	1.70
31905211--31905820	304	2.0	304	96	0	1130	29	10	22	38	1.87
31911880--31911923	23	1.9	23	85	0	61	50	27	6	15	1.70
31912642--31912810	43	4.0	42	76	12	148	32	20	17	28	1.96
31920492--31920540	24	2.0	24	96	0	89	14	51	14	20	1.77
31920494--31920542	12	4.1	12	83	0	62	14	46	14	24	1.81
31930724--31930767	23	2.0	22	86	13	63	40	18	15	25	1.90
31932499--31932902	47	8.5	47	91	4	625	29	29	8	32	1.87
31932499--31932902	96	4.3	95	93	3	665	29	29	8	32	1.87
31932499--31932902	187	2.1	190	93	3	692	29	29	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31936656--31936860	40	5.1	40	95	2	358	25	27	20	25	1.99
31938985--31939393	47	8.5	47	91	3	620	29	30	8	32	1.86
31938985--31939393	96	4.3	96	94	1	689	29	30	8	32	1.86
31939205--31939280	22	3.3	22	64	10	62	28	27	10	32	1.90
31941934--31942084	27	5.7	27	80	3	155	22	16	19	41	1.90
31941935--31942073	53	2.6	54	80	3	156	23	17	18	41	1.91
31941934--31942084	80	1.9	79	86	1	212	22	16	19	41	1.90
31942076--31942203	27	4.7	27	81	1	123	39	13	14	32	1.84
31942077--31942203	54	2.4	54	78	2	139	40	13	13	33	1.83
31942307--31942348	18	2.3	18	76	8	50	21	42	26	9	1.83
31944924--31944967	23	1.9	23	85	0	61	50	29	4	15	1.64
31945669--31945769	43	2.4	42	81	8	116	29	22	19	27	1.98
31950328--31950554	49	4.6	50	79	2	233	30	26	17	25	1.97
31950807--31950859	27	2.0	27	84	0	70	39	13	7	39	1.73
31956203--31956253	25	2.0	25	88	0	75	31	23	13	31	1.93
31956296--31956334	10	3.8	10	93	6	69	33	17	17	30	1.94
31956295--31956334	21	1.9	21	100	0	80	35	17	17	30	1.93
31962822--31962872	25	2.0	25	88	0	75	29	23	19	27	1.98
31962912--31962944	11	3.1	11	91	8	59	36	18	18	27	1.94
31965671--31965908	49	4.8	49	77	6	237	31	26	15	26	1.96
31965679--31965915	100	2.4	99	82	3	262	31	27	16	25	1.96
31968400--31968462	31	2.0	31	100	0	126	42	9	19	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31988184--31988232	22	2.2	22	78	7	55	34	24	28	12	1.91
31994617--31994784	43	4.0	42	73	7	142	26	14	25	33	1.94
32000832--32000980	80	1.9	80	81	2	183	22	30	24	22	1.99
32000873--32000980	40	2.7	38	85	8	128	21	29	25	23	1.99
32005129--32005238	6	17.8	6	73	15	91	48	14	20	17	1.81
32005141--32005238	25	3.7	25	86	8	115	46	15	20	17	1.83
32005141--32005216	31	2.5	31	97	0	143	44	15	22	17	1.86
32005134--32005238	31	3.6	30	78	15	121	47	15	20	17	1.82
32005905--32005963	27	2.2	27	93	0	100	32	16	13	37	1.88
32005948--32006232	27	10.6	27	75	6	202	29	8	22	40	1.83
32005997--32006131	53	2.5	54	84	4	175	28	9	22	38	1.86
32005947--32006207	54	4.9	53	78	6	231	27	8	23	39	1.84
32005948--32006207	107	2.4	107	78	8	267	28	8	23	40	1.84
32006198--32006248	27	1.9	27	84	4	68	41	7	15	35	1.76
32009927--32009990	31	2.1	31	90	0	101	25	23	15	35	1.94
32010198--32010349	24	6.4	24	91	3	236	25	21	23	29	1.99
32010198--32010349	71	2.1	71	92	1	250	25	21	23	29	1.99
32010198--32010349	47	3.2	48	90	3	236	25	21	23	29	1.99
32010408--32010464	9	5.9	9	73	15	51	35	21	8	35	1.84
32010404--32010466	20	3.2	20	95	0	117	31	19	12	36	1.89
32011709--32011792	27	3.1	27	92	0	132	20	26	22	30	1.98
32011709--32011802	27	3.5	26	88	4	125	20	25	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32011831--32012083	27	9.3	27	76	4	150	30	9	20	39	1.84
32012062--32012336	27	9.8	27	76	10	212	40	8	23	28	1.83
32011934--32012191	81	3.2	80	78	6	207	34	7	21	35	1.82
32012134--32012260	65	2.0	65	87	0	182	39	6	26	27	1.80
32012106--32012289	92	2.0	92	86	0	260	40	7	24	27	1.82
32012151--32012232	38	2.2	38	81	0	92	39	6	30	24	1.79
32012062--32012327	146	1.8	146	90	0	424	40	7	22	28	1.82
32012070--32012316	119	2.1	119	83	1	307	40	8	23	27	1.83
32013725--32013896	93	1.8	93	92	0	290	27	31	21	19	1.98
32013717--32013892	46	3.8	46	79	4	210	28	30	21	19	1.98
32020454--32020576	57	2.1	58	81	1	140	33	23	15	27	1.95
32020455--32020591	58	2.4	57	80	1	148	33	24	13	28	1.93
32027178--32027347	47	3.6	47	96	0	304	31	9	30	28	1.88
32027178--32027544	48	7.7	46	87	3	265	33	8	28	29	1.88
32027328--32027544	48	4.5	48	91	0	326	34	9	28	28	1.88
32027582--32027678	37	2.6	37	86	3	133	28	16	28	25	1.97
32030810--32031019	41	4.8	43	75	13	169	30	27	19	23	1.98
32030758--32030991	92	2.5	92	89	1	353	32	26	17	24	1.97
32030915--32031020	43	2.5	41	87	4	149	30	28	18	22	1.98
32041820--32041931	6	18.3	6	80	14	131	48	16	17	17	1.82
32041829--32041931	31	3.4	31	90	4	156	48	15	18	17	1.81
32042397--32042581	27	6.9	27	86	0	244	40	8	22	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32044191--32044293	29	3.6	29	92	2	154	26	32	15	26	1.96
32052266--32052368	29	3.6	29	92	2	154	26	32	15	26	1.96
32055409--32055575	40	4.2	40	82	2	185	25	27	21	25	1.99
32055409--32055575	80	2.1	79	83	7	205	25	27	21	25	1.99
32056400--32056445	17	2.5	19	74	22	53	34	23	17	23	1.96
32063405--32063571	40	4.2	40	82	2	185	25	27	21	25	1.99
32063405--32063571	80	2.1	79	83	7	205	25	27	21	25	1.99
32064396--32064441	17	2.5	19	74	22	53	34	23	17	23	1.96
32065743--32065853	43	2.6	43	86	1	152	24	31	25	18	1.98
32066984--32067111	47	2.7	47	82	2	141	31	27	15	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378