Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  309  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93812911--93813231
160
2.0
160
98
0
615
34
31
9
25
1.87
93815821--93815853
15
2.2
15
100
0
66
33
6
21
39
1.78
93823535--93823639
39
2.6
41
85
4
135
31
21
25
20
1.98
93823539--93823689
40
3.8
40
83
6
164
27
23
26
22
1.99
93823537--93823721
40
4.7
39
76
9
153
27
22
27
23
2.00
93832772--93832886
44
2.6
44
85
2
149
35
13
22
27
1.92
93832772--93832905
46
3.0
45
82
4
153
35
14
23
26
1.93
93840012--93840145
46
3.0
45
83
4
162
35
13
23
27
1.93
93845327--93845374
20
2.4
20
85
0
60
37
14
25
22
1.92
93845288--93845411
60
2.1
60
81
3
142
38
16
22
21
1.93
93846374--93846409
2
18.0
2
100
0
72
50
0
0
50
1.00
93853981--93854051
16
4.6
16
72
20
62
73
5
5
15
1.21
93853973--93854051
10
7.2
10
70
17
50
73
5
6
15
1.21
93862170--93862198
2
14.5
2
100
0
58
51
0
0
48
1.00
93864966--93864994
2
14.5
2
100
0
58
51
0
0
48
1.00
93866274--93866304
15
2.1
15
93
0
53
48
22
0
29
1.51
93866556--93866586
15
2.1
15
93
0
53
54
25
0
19
1.44
93867488--93867519
8
4.0
8
100
0
64
50
25
12
12
1.75
93868580--93868717
26
5.2
27
82
10
162
35
24
21
18
1.95
93868562--93868717
53
3.0
53
87
8
221
35
23
22
19
1.96
93870326--93870433
26
4.2
26
91
0
171
36
22
7
34
1.82
93875663--93875821
27
5.9
27
81
11
166
33
22
25
19
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93875678--93875821
54
2.7
54
90
2
218
33
22
25
18
1.97
93877440--93877547
26
4.2
26
91
2
173
34
23
8
34
1.85
93878918--93878956
21
2.0
21
90
10
64
23
28
38
10
1.87
93881512--93881677
46
3.5
46
76
8
140
24
28
19
28
1.98
93885826--93885939
39
2.9
39
85
0
156
24
18
28
28
1.98
93887997--93888126
40
3.3
39
79
4
145
23
27
24
23
2.00
93895945--93896003
30
2.0
30
93
0
100
30
25
11
32
1.92
93899199--93899371
93
1.9
93
96
0
319
27
30
21
20
1.98
93899192--93899367
46
3.8
46
79
12
216
28
29
21
20
1.98
93904261--93904294
2
17.0
2
93
0
59
50
2
0
47
1.16
93905004--93905126
41
2.9
44
78
10
139
31
27
17
23
1.97
93905716--93905746
15
2.1
15
93
0
53
54
25
0
19
1.44
93905906--93906019
56
2.0
56
98
0
219
29
11
13
45
1.78
93908952--93909060
54
2.0
54
100
0
218
22
12
31
33
1.91
93909621--93909695
29
2.7
29
83
4
82
28
30
16
25
1.96
93909985--93910026
22
1.9
22
85
9
59
42
23
11
21
1.86
93910998--93911073
17
4.5
17
84
0
107
30
19
21
28
1.97
93911071--93911103
17
1.9
17
93
0
57
42
18
9
30
1.81
93913154--93913325
75
2.4
75
83
8
205
32
11
23
33
1.90
93913157--93913323
35
4.6
35
84
9
167
32
11
23
32
1.90
93913253--93913323
36
2.0
35
88
2
106
33
14
21
30
1.92
93920653--93920824
75
2.4
75
83
8
205
32
11
23
33
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93920656--93920822
35
4.6
35
84
9
167
32
11
23
32
1.90
93920752--93920822
36
2.0
35
88
2
106
33
14
21
30
1.92
93939169--93939207
17
2.4
16
84
16
53
48
7
2
41
1.45
93956978--93957176
104
1.9
103
98
1
389
45
10
22
21
1.81
93958272--93958370
29
3.4
29
87
0
135
27
15
32
25
1.95
93968663--93968814
40
3.8
40
83
5
164
28
23
26
22
1.99
93968661--93968846
40
4.7
39
76
9
153
27
22
26
23
1.99
93980535--93980764
48
4.9
48
78
11
242
27
19
25
27
1.99
93988356--93988433
17
4.6
17
76
17
83
55
1
8
34
1.40
93988356--93988395
8
4.8
8
84
9
53
57
0
10
32
1.32
93996165--93996196
6
5.5
6
96
3
57
15
0
0
84
0.63
93996850--93996883
18
1.9
18
94
5
61
11
23
44
20
1.84
93998921--93999069
80
1.9
80
81
2
183
22
30
24
22
1.99
93998962--93999069
40
2.7
38
85
8
128
21
29
25
23
1.99
94006846--94006994
80
1.9
80
81
2
183
22
30
24
22
1.99
94006887--94006994
40
2.7
38
85
8
128
21
29
25
23
1.99
94010180--94010277
29
3.6
28
80
13
114
28
16
32
22
1.95
94018008--94018086
29
2.7
29
94
0
131
30
13
29
26
1.94
94022539--94022649
47
2.4
46
85
8
154
36
23
15
25
1.94
94024769--94024810
20
2.1
20
82
8
50
69
7
4
19
1.31
94035362--94035474
59
1.9
60
92
1
192
26
19
12
41
1.87
94036784--94036863
41
2.0
41
80
9
92
58
13
6
21
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94041454--94041496
2
21.5
2
95
0
77
53
0
0
46
1.00
94045648--94045694
8
5.9
8
100
0
94
51
10
0
38
1.37
94048549--94048581
13
2.6
13
90
4
50
48
12
0
39
1.40
94050796--94050867
28
2.6
28
84
0
90
27
27
12
31
1.93
94056636--94056680
21
2.2
20
84
4
54
17
24
24
33
1.96
94058708--94058871
71
2.3
71
100
0
328
18
28
17
35
1.94
94058708--94058905
71
2.8
70
91
3
258
20
28
17
33
1.95
94061427--94061534
26
4.2
26
93
0
189
32
7
24
36
1.83
94068648--94068746
28
3.5
29
90
5
150
28
12
27
32
1.92
94071381--94071488
26
4.2
26
93
0
189
33
7
24
35
1.83
94075845--94075869
13
1.9
13
100
0
50
48
8
0
44
1.32
94077191--94077232
20
2.2
19
83
12
50
61
2
19
16
1.44
94077664--94077694
16
2.0
16
93
6
55
29
0
19
51
1.47
94079017--94079051
18
1.9
19
88
11
56
31
0
2
65
1.07
94083648--94083831
40
4.6
39
75
6
138
26
23
27
22
2.00
94083688--94083876
80
2.4
81
77
4
186
23
24
29
22
1.99
94095617--94095759
77
1.9
77
83
5
191
34
24
18
21
1.96
94098203--94098256
27
2.0
27
96
0
99
62
3
9
24
1.41
94100279--94100399
54
2.2
54
75
8
120
28
27
25
19
1.98
94104049--94104130
29
2.8
29
98
0
155
25
30
14
29
1.95
94106494--94106571
6
13.0
6
94
0
138
65
0
16
17
1.28
94109938--94110098
43
3.8
42
76
11
141
32
24
18
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94111194--94111231
13
2.9
13
88
0
58
44
23
2
28
1.67
94117609--94117705
41
2.3
41
78
7
106
36
22
15
25
1.94
94117641--94117745
44
2.5
44
84
7
137
33
24
17
24
1.96
94123138--94123182
19
2.4
19
88
0
63
42
22
6
28
1.79
94124151--94124185
15
2.2
16
95
5
63
31
22
17
28
1.96
94147022--94147069
25
1.9
25
86
0
69
33
25
16
25
1.96
94147112--94147172
20
3.0
20
92
0
104
34
11
21
32
1.89
94147222--94147387
24
7.0
24
91
4
248
28
22
22
26
1.99
94147579--94147641
31
2.1
31
90
3
101
36
15
23
23
1.94
94153474--94153521
25
1.9
25
86
0
69
33
25
16
25
1.96
94153564--94153624
20
3.0
20
92
0
104
34
11
21
32
1.89
94153674--94153816
24
6.0
24
91
4
209
28
22
22
26
1.99
94153674--94153816
47
3.0
47
90
5
207
28
22
22
26
1.99
94153674--94153817
71
2.0
72
89
4
220
29
22
22
26
1.99
94154008--94154071
31
2.1
31
90
0
101
35
15
25
23
1.94
94156335--94156416
34
2.4
34
83
0
92
28
24
18
29
1.98
94156418--94156474
18
3.2
18
82
9
80
40
15
19
24
1.90
94162129--94162174
23
2.0
23
84
12
60
45
10
6
36
1.65
94162136--94162180
23
2.0
23
82
8
56
40
13
8
37
1.76
94165369--94165462
43
2.2
43
88
1
136
36
25
12
25
1.92
94165350--94165462
42
2.7
42
83
1
136
35
25
13
25
1.92
94169645--94169820
48
3.7
48
88
1
248
18
17
27
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94172034--94172121
27
3.2
28
90
4
119
31
26
23
18
1.97
94183108--94183137
12
2.5
12
100
0
60
53
26
0
20
1.46
94192587--94192632
15
3.2
15
76
17
53
34
10
0
54
1.36
94193546--94193604
29
2.0
29
100
0
118
47
0
15
37
1.45
94194533--94194692
86
1.9
85
82
8
200
22
18
27
31
1.97
94194520--94194692
43
4.0
43
77
11
167
22
17
27
32
1.96
94200007--94200142
43
3.2
43
91
0
218
13
22
32
30
1.93
94200299--94200456
29
5.5
29
64
13
101
22
19
27
30
1.98
94200296--94200519
57
3.9
58
92
4
384
22
19
29
29
1.98
94200272--94200515
115
2.2
115
89
5
385
23
18
28
29
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378