genome.fa.s1.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  219  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64952801--64952883	15	5.6	14	73	10	58	55	16	18	9	1.68
64952812--64952889	15	5.2	15	75	9	70	55	15	17	11	1.69
64955837--64956007	93	1.8	93	96	0	315	27	29	22	20	1.98
64955829--64956009	46	3.9	46	81	9	233	27	29	21	20	1.98
64972689--64972839	43	3.5	43	76	5	144	26	14	24	34	1.94
64974811--64974865	28	2.0	28	100	0	110	27	29	14	29	1.95
64975530--64975596	31	2.2	31	97	0	125	31	11	14	41	1.83
64983951--64983996	10	4.5	10	81	5	56	15	23	21	39	1.92
64983948--64983996	21	2.4	20	89	3	71	14	22	22	40	1.90
64984221--64984249	13	2.2	13	100	0	58	27	0	10	62	1.28
64989481--64989575	34	2.8	34	85	4	113	32	24	21	22	1.98
64992683--64992937	55	4.8	54	81	7	265	35	17	24	22	1.95
64992690--64992890	108	1.8	110	89	4	318	33	17	24	23	1.96
64993005--64993049	23	1.9	24	95	4	83	44	11	22	22	1.84
64993127--64993151	8	3.1	8	100	0	50	40	0	12	48	1.40
65000041--65000295	55	4.8	53	79	8	245	34	18	25	21	1.96
65000048--65000248	108	1.8	110	88	4	309	33	18	24	22	1.96
65000363--65000407	23	1.9	24	90	4	74	42	11	24	22	1.86
65000486--65000516	16	1.9	16	93	0	53	41	0	22	35	1.54
65015104--65015524	27	15.7	27	86	2	517	39	19	7	33	1.80
65015104--65015524	134	3.1	134	89	2	596	39	19	7	33	1.80
65015513--65015752	27	9.0	27	88	3	317	33	21	21	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65015104--65015579	134	3.6	134	85	3	381	38	20	9	31	1.84
65015513--65015734	53	4.2	54	88	2	315	33	22	20	22	1.97
65016183--65016243	22	2.8	22	82	5	70	19	22	22	34	1.97
65016394--65016449	26	2.2	26	87	3	78	17	21	21	39	1.93
65016570--65016689	6	19.3	6	71	19	86	18	16	15	49	1.80
65016570--65016680	31	3.5	31	92	1	168	18	17	15	49	1.80
65016593--65016677	25	3.5	24	80	15	93	18	17	16	47	1.84
65018520--65019054	27	19.7	27	84	3	598	39	20	8	32	1.82
65019042--65019257	27	8.0	27	86	0	290	32	21	22	24	1.98
65019684--65019748	22	3.0	22	80	8	78	20	23	23	33	1.97
65019899--65019954	26	2.2	26	83	3	69	16	23	21	39	1.92
65020083--65020185	31	3.3	31	94	0	170	17	15	15	51	1.77
65020075--65020194	6	19.3	6	71	19	68	18	15	15	50	1.78
65021007--65021058	22	2.5	20	85	11	77	23	0	1	75	0.91
65021060--65021084	4	6.2	4	100	0	50	48	0	0	52	1.00
65021099--65021163	16	4.1	16	76	23	66	21	1	0	76	0.86
65021099--65021163	32	2.0	31	82	11	78	21	1	0	76	0.86
65021099--65021148	18	3.0	18	81	18	56	24	2	0	74	0.93
65021099--65021163	8	8.1	8	72	13	53	21	1	0	76	0.86
65021233--65021314	3	28.7	3	75	22	61	23	2	2	71	1.09
65021222--65021314	11	8.6	11	71	23	65	23	2	4	69	1.17
65021236--65021269	8	4.5	8	85	14	54	26	0	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65022409--65022456	17	2.7	18	74	6	53	35	6	8	50	1.58
65025766--65025934	47	3.6	47	95	0	293	36	13	23	26	1.92
65025907--65026172	54	5.0	52	82	7	286	36	17	24	21	1.94
65025981--65026170	105	1.8	106	88	1	292	35	18	25	20	1.95
65030340--65030507	40	4.2	40	82	3	178	25	26	22	26	2.00
65032164--65032241	27	2.9	27	86	0	111	38	17	19	24	1.93
65035897--65036072	46	3.8	46	78	10	196	19	20	30	29	1.97
65035893--65036065	93	1.9	93	92	0	292	19	20	31	28	1.97
65038608--65038786	46	3.9	46	82	10	229	20	21	29	27	1.98
65038607--65038778	93	1.8	93	93	0	299	20	22	30	27	1.98
65040128--65040187	27	2.3	26	82	2	66	21	21	20	36	1.95
65043870--65043968	28	3.5	29	80	6	105	30	26	15	28	1.96
65044607--65044640	2	17.0	2	87	0	50	44	2	2	50	1.32
65046477--65046911	47	9.3	47	90	0	683	28	29	8	34	1.86
65052241--65052315	27	2.7	27	81	6	89	28	9	12	50	1.70
65055878--65055979	42	2.4	43	82	9	120	28	21	19	30	1.98
65059650--65059697	24	2.0	24	100	0	96	29	8	25	37	1.85
65065301--65065347	15	3.2	14	85	8	67	10	23	2	63	1.37
65068277--65068345	31	2.2	31	86	0	93	46	15	18	18	1.84
65068525--65068576	27	2.0	26	84	3	68	34	21	26	17	1.95
65068813--65068955	27	5.3	27	91	0	196	39	4	23	31	1.76
65068813--65068961	81	1.8	81	89	0	235	39	5	23	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65070320--65070505	40	4.7	40	86	5	218	25	26	22	25	2.00
65075874--65076059	40	4.7	40	86	5	227	25	26	22	25	2.00
65077729--65078038	27	11.4	27	86	1	361	41	7	19	31	1.79
65077730--65078038	81	3.8	81	84	0	402	42	7	18	31	1.79
65078081--65078143	27	2.3	26	86	5	81	30	9	20	39	1.84
65080193--65080261	31	2.2	31	86	0	93	46	15	18	18	1.84
65080733--65081170	27	16.2	27	87	1	491	40	7	20	31	1.81
65080733--65081170	81	5.4	81	85	0	543	40	7	20	31	1.81
65081148--65081265	27	4.4	27	75	6	96	30	8	21	39	1.83
65083310--65083378	31	2.2	31	86	0	93	46	15	18	18	1.84
65083850--65084449	27	22.2	27	85	1	655	40	8	21	30	1.82
65084427--65084571	54	2.7	53	78	10	150	28	8	22	40	1.82
65084441--65084571	27	4.8	26	79	7	129	28	8	22	40	1.83
65084441--65084595	27	5.8	26	77	9	107	27	7	23	41	1.82
65086571--65086664	6	15.3	6	66	16	50	51	12	17	19	1.77
65086592--65086664	31	2.4	31	83	0	92	50	12	17	19	1.77
65086765--65086828	33	2.0	32	87	3	92	35	18	23	21	1.95
65086844--65086895	27	2.0	26	84	3	68	34	21	26	17	1.95
65087132--65087514	27	14.2	27	85	1	437	40	7	20	30	1.80
65087477--65087659	54	3.4	54	75	11	162	30	8	21	39	1.84
65087506--65087659	27	5.8	26	78	10	116	27	9	22	40	1.84
65090563--65090672	40	2.7	40	80	4	114	27	14	25	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65092523--65092992	27	17.5	27	83	2	516	40	19	8	30	1.82
65092975--65093036	27	2.3	27	85	0	79	40	12	16	30	1.86
65096162--65096386	49	4.5	49	88	2	306	28	28	18	24	1.98
65096149--65096394	101	2.5	99	85	2	341	27	28	18	25	1.98
65098562--65098674	50	2.2	50	87	3	163	38	14	15	31	1.88
65101244--65101294	23	2.4	20	73	20	50	19	9	3	66	1.36
65101240--65101287	23	2.0	25	88	12	73	18	12	4	64	1.43
65104289--65104372	38	2.2	40	84	4	109	44	13	9	33	1.76
65106806--65106847	20	2.2	20	86	4	59	57	4	2	35	1.33
65111585--65111697	38	2.9	39	88	2	165	44	10	11	33	1.75
65113764--65113793	10	3.0	10	90	0	51	70	3	0	26	1.03
65121220--65121380	45	3.7	45	85	3	159	33	26	16	22	1.96
65121241--65121417	45	3.9	45	87	1	230	33	25	16	24	1.96
65123599--65123624	13	2.0	13	100	0	52	30	0	7	61	1.24
65125139--65125318	40	4.5	40	89	4	267	24	20	27	27	1.99
65125139--65125342	80	2.6	79	85	3	268	25	21	26	26	2.00
65133523--65133548	13	2.0	13	100	0	52	30	0	7	61	1.24
65135060--65135272	40	5.3	39	80	8	196	27	19	24	27	1.99
65135068--65135272	80	2.6	80	81	7	254	26	20	25	27	1.99
65137213--65137251	19	2.1	19	85	9	53	15	20	43	20	1.88
65137415--65137613	27	7.4	27	84	0	245	38	17	20	24	1.93
65137415--65137613	81	2.5	81	88	0	281	38	17	20	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65139034--65139062	14	2.0	15	93	6	51	51	20	0	27	1.47
65143964--65143990	8	3.4	8	100	0	54	40	37	0	22	1.54
65145781--65146003	45	5.0	45	83	5	226	34	26	16	23	1.95
65149841--65149954	23	4.9	23	76	5	104	22	22	18	35	1.95
65149849--65149956	47	2.3	47	83	3	146	24	22	17	36	1.95
65150091--65150131	20	2.0	20	95	0	73	36	0	21	41	1.54
65153640--65153721	29	2.9	28	83	3	110	26	30	15	26	1.96
65159793--65159938	37	3.9	37	73	10	116	36	8	12	41	1.74
65159868--65159944	38	2.1	37	85	2	100	32	11	11	44	1.77
65161606--65161675	29	2.4	29	85	2	86	28	25	11	34	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378