genome.fa.s1.2.7.7.80.10.50.1000.235.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  235  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69549130--69549370	40	6.1	40	83	4	235	28	26	21	24	1.99
69549155--69549378	79	2.8	78	83	7	265	29	26	20	23	1.99
69549155--69549370	40	5.4	40	85	3	244	28	26	20	23	1.99
69551466--69551656	40	4.8	39	78	7	172	23	28	24	24	1.99
69551506--69551656	78	1.9	80	85	5	209	23	28	23	25	1.99
69559504--69559684	40	4.6	39	77	8	161	22	28	24	24	2.00
69561701--69561801	39	2.5	40	85	1	132	30	22	24	21	1.99
69561701--69561883	40	4.6	40	82	3	181	27	22	26	23	1.99
69574961--69575046	34	2.6	33	81	5	84	29	20	25	24	1.99
69588820--69590020	48	25.0	48	94	0	1956	31	27	6	34	1.82
69593622--69593987	40	9.1	40	88	2	493	24	27	21	25	1.99
69597232--69597363	29	4.5	29	97	1	246	24	24	14	37	1.92
69597232--69597363	59	2.3	59	97	1	248	24	24	14	37	1.92
69598663--69598698	18	1.9	18	88	5	54	11	25	0	63	1.27
69599134--69599263	40	3.2	40	84	4	174	22	24	29	23	1.99
69607240--69607369	40	3.2	40	84	4	174	22	24	29	23	1.99
69610150--69611064	48	19.0	48	93	0	1445	31	26	6	35	1.81
69613776--69613829	27	2.0	27	96	0	99	33	20	24	22	1.97
69613783--69613840	27	2.1	27	83	0	71	37	22	18	20	1.94
69618192--69618376	79	2.3	81	83	7	227	23	27	24	24	2.00
69618185--69618376	40	4.8	39	76	8	163	23	28	23	24	2.00
69626246--69626430	79	2.3	81	83	7	227	23	27	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69626239--69626430	40	4.8	39	76	8	163	23	28	23	24	2.00
69630831--69631050	40	5.6	40	81	4	241	25	27	22	24	2.00
69633007--69633231	124	1.8	124	86	1	326	30	10	24	35	1.88
69633226--69633355	40	3.2	40	83	4	165	22	25	29	23	1.99
69639431--69639522	28	3.2	29	90	4	152	31	16	28	23	1.96
69647344--69647425	29	2.9	29	98	1	157	29	14	29	26	1.95
69647340--69647474	59	2.4	57	81	6	148	27	15	31	25	1.96
69652390--69652462	29	2.5	29	100	0	146	28	15	28	27	1.96
69652390--69652522	58	2.3	59	80	5	137	25	15	32	26	1.96
69655002--69655125	28	4.3	29	83	2	153	23	12	33	31	1.91
69655006--69655118	57	2.0	57	85	3	156	23	13	34	29	1.92
69656238--69656271	18	1.9	18	88	5	52	41	11	17	29	1.85
69659314--69659356	16	2.7	16	77	0	50	51	27	13	6	1.67
69659570--69659689	29	4.2	29	80	8	129	28	14	28	29	1.95
69661775--69661799	13	1.9	13	100	0	50	32	16	16	36	1.90
69663308--69663817	48	10.6	48	97	0	939	32	8	27	31	1.86
69663862--69663984	37	3.3	37	97	0	228	26	18	31	23	1.97
69667777--69667960	40	4.6	40	82	4	174	28	22	26	23	1.99
69675865--69676048	40	4.6	40	82	4	174	28	22	26	23	1.99
69675907--69676093	80	2.3	80	79	3	189	24	22	29	24	1.99
69678529--69678561	15	2.2	15	89	10	50	27	0	12	60	1.32
69679858--69680129	56	4.9	56	89	0	375	29	15	22	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69683355--69683484	40	3.2	40	76	2	145	23	27	23	24	2.00
69683371--69683522	40	3.8	40	76	5	137	22	26	23	27	1.99
69685296--69685325	2	15.5	2	93	6	53	50	0	0	50	1.00
69687392--69687449	28	2.1	28	96	0	107	55	12	3	29	1.53
69691284--69691401	42	2.8	43	83	6	152	31	26	17	24	1.97
69691284--69691398	43	2.7	43	84	6	146	30	26	18	24	1.98
69695467--69695499	11	3.3	10	88	12	50	51	12	9	27	1.69
69695633--69695707	25	3.0	25	96	0	132	32	36	16	16	1.90
69706872--69706969	28	3.5	28	84	4	108	29	16	24	29	1.96
69714552--69714649	28	3.5	28	84	4	108	29	16	24	29	1.96
69734134--69734318	79	2.3	81	83	7	227	23	27	24	24	2.00
69734127--69734318	40	4.8	39	76	8	163	23	28	23	24	2.00
69743079--69743151	29	2.5	29	93	0	101	26	31	16	26	1.96
69747520--69747636	44	2.7	44	89	7	184	29	14	24	31	1.95
69749242--69749299	30	1.9	31	85	3	82	34	12	24	29	1.91
69749867--69750093	95	2.4	92	76	9	235	35	18	23	22	1.96
69750055--69750359	55	5.6	55	81	7	356	35	17	24	22	1.95
69750063--69750359	108	2.7	108	91	1	452	35	17	24	22	1.95
69761145--69761196	26	2.0	26	85	7	70	36	1	19	42	1.62
69770142--69770321	31	5.8	31	90	2	281	26	19	27	26	1.99
69770339--69770510	47	3.7	46	85	3	173	29	15	25	29	1.96
69770390--69770561	91	1.9	91	84	9	215	30	13	25	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69770390--69770561	49	3.7	47	82	7	187	30	13	25	30	1.94
69770483--69770576	42	2.2	42	86	3	127	31	13	24	29	1.94
69771238--69771286	23	2.1	23	92	0	80	44	8	12	34	1.71
69773750--69773792	19	2.3	19	81	14	54	46	9	4	39	1.57
69773753--69773791	20	2.0	20	85	9	55	43	10	5	41	1.61
69775103--69775190	44	2.0	44	100	0	176	25	11	18	45	1.82
69783646--69783687	21	2.0	21	86	13	61	28	4	19	47	1.69
69817849--69817926	26	2.9	26	75	7	66	39	15	15	29	1.88
69820831--69820869	15	2.5	15	84	15	53	2	25	0	71	0.98
69826078--69826109	17	1.9	16	93	6	55	68	0	3	28	1.04
69837376--69837439	28	2.3	28	91	2	103	35	28	7	28	1.85
69837544--69837625	28	3.0	28	80	8	80	19	20	20	39	1.93
69837543--69837657	27	4.3	26	78	11	97	20	20	20	38	1.94
69840068--69840282	46	4.6	48	80	12	198	22	30	19	27	1.98
69841298--69841361	26	2.4	26	89	2	101	28	9	25	37	1.87
69844898--69844980	27	3.0	28	81	10	109	33	21	22	21	1.97
69845574--69845691	59	2.0	59	96	0	218	38	12	26	22	1.90
69845832--69845926	24	4.0	24	90	0	154	34	4	40	21	1.72
69847348--69847458	27	4.2	26	87	5	141	16	23	22	37	1.93
69849696--69849859	43	3.8	43	70	13	122	32	24	19	23	1.97
69849702--69849859	84	1.9	83	79	13	180	32	24	19	23	1.97
69850750--69851060	27	11.6	27	77	6	294	40	20	8	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69850750--69851085	161	2.1	159	83	8	414	39	20	9	30	1.85
69851066--69851348	27	10.5	28	84	5	302	36	17	21	24	1.95
69851490--69851520	16	1.9	16	93	0	53	29	19	16	35	1.93
69851676--69851734	22	2.7	22	83	0	73	20	23	22	33	1.97
69851891--69851995	27	3.9	27	85	5	122	20	22	20	37	1.95
69851892--69851999	54	2.0	53	85	1	144	18	23	21	37	1.95
69852117--69852241	6	20.3	6	67	16	69	20	19	12	48	1.80
69852117--69852220	31	3.4	31	93	0	172	21	20	11	47	1.81
69856160--69856353	56	3.5	56	89	2	284	28	17	21	32	1.96
69856160--69856366	111	1.9	112	87	3	310	28	16	22	32	1.95
69859894--69859976	29	2.9	29	100	0	166	30	14	28	26	1.95
69859890--69860025	59	2.3	58	82	5	159	27	15	31	25	1.96
69866588--69866654	23	3.0	23	74	17	63	74	1	16	7	1.11
69867808--69867890	29	2.9	29	100	0	166	30	14	28	26	1.95
69867804--69867939	59	2.3	58	82	5	159	27	15	31	25	1.96
69870376--69870526	40	3.8	40	77	13	134	27	23	26	22	2.00
69870412--69870542	40	3.3	40	79	2	156	25	23	27	23	2.00
69878362--69878512	40	3.8	40	75	15	134	27	23	26	23	2.00
69878398--69878528	40	3.3	40	79	6	158	25	22	27	24	2.00
69880033--69880239	40	5.2	40	81	4	186	26	22	26	25	2.00
69880034--69880239	80	2.6	80	82	5	229	25	22	26	25	2.00
69894679--69894751	29	2.5	29	97	0	137	17	20	36	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69902285--69902313	14	2.0	15	93	6	51	10	41	0	48	1.37
69910392--69910494	51	2.0	50	92	5	172	32	11	20	35	1.89
69914967--69915039	29	2.5	29	93	0	101	26	31	16	26	1.96
69922900--69922972	29	2.5	29	93	0	101	26	31	16	26	1.96
69931311--69931458	39	3.8	39	75	15	135	25	24	27	22	2.00
69931346--69931474	40	3.2	40	79	4	154	23	24	27	24	2.00
69938614--69938728	55	2.1	56	83	8	146	34	22	23	19	1.96
69938639--69938728	27	3.2	27	81	7	101	32	24	23	20	1.98
69938834--69938926	28	3.3	28	93	3	152	29	7	29	34	1.85
69939173--69939204	8	4.0	8	91	0	55	3	25	25	46	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378