genome.fa.s1.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  152  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43737306--43737396	37	2.4	37	92	1	155	24	32	18	24	1.97
43737492--43737844	49	7.4	49	91	5	571	29	32	9	29	1.88
43737513--43737790	89	3.0	89	88	9	439	29	33	8	28	1.87
43737492--43737844	138	2.5	142	90	5	518	29	32	9	29	1.88
43742537--43742582	22	2.1	22	100	0	92	19	30	26	23	1.98
43745115--43745677	281	2.0	277	92	2	932	33	23	8	34	1.85
43745975--43746007	13	2.6	13	90	4	50	48	12	0	39	1.40
43748315--43748501	66	2.8	65	89	2	275	31	18	29	20	1.96
43752556--43752630	12	5.8	12	79	14	60	81	0	5	13	0.86
43752580--43752632	5	10.2	5	81	18	56	79	0	1	18	0.83
43752551--43752629	15	5.2	15	80	20	76	79	0	6	13	0.91
43752579--43752632	21	2.6	21	78	21	60	79	0	1	18	0.82
43758003--43758035	13	2.6	13	90	4	50	48	12	0	39	1.40
43761380--43761546	46	3.6	46	79	7	162	25	31	16	26	1.97
43763367--43763418	18	2.9	18	82	0	68	21	26	25	26	1.99
43765914--43766022	51	2.1	51	87	0	155	27	22	11	39	1.87
43768317--43768421	45	2.3	45	98	0	201	30	23	15	30	1.95
43770414--43770604	40	4.8	39	77	7	163	25	24	27	23	2.00
43770413--43770597	79	2.3	82	82	7	220	24	24	27	23	2.00
43770465--43770630	79	2.1	79	79	4	183	25	23	27	24	2.00
43772818--43772905	21	4.1	22	80	10	92	37	23	21	17	1.94
43773074--43773143	28	2.8	23	71	19	68	44	32	4	18	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43773087--43773170	28	3.0	28	87	1	123	46	28	3	21	1.68
43774683--43774794	51	2.2	51	90	0	170	28	20	13	37	1.90
43779780--43779950	93	1.8	93	91	0	279	29	28	19	21	1.98
43779775--43779947	46	3.7	46	76	13	192	30	27	19	21	1.98
43780369--43780428	30	2.0	30	86	0	84	31	23	8	36	1.84
43787270--43787368	28	3.5	28	81	9	112	29	25	16	29	1.96
43810239--43810289	22	2.3	22	96	0	93	33	13	0	52	1.41
43812550--43812947	45	8.8	45	88	4	532	28	29	19	23	1.98
43814967--43815222	55	4.9	52	74	12	186	34	17	25	22	1.96
43814978--43815175	108	1.8	110	85	4	285	33	17	25	23	1.96
43815372--43815402	16	1.9	16	93	0	53	41	0	22	35	1.54
43825061--43825256	53	3.6	53	74	6	133	21	23	16	37	1.94
43830692--43830862	92	1.8	93	91	3	283	28	29	19	22	1.98
43830684--43830858	46	3.8	46	77	15	191	29	29	19	22	1.98
43833245--43833284	14	2.8	14	84	3	53	60	7	20	12	1.56
43836217--43836387	92	1.8	93	91	1	281	28	29	20	21	1.98
43836209--43836383	46	3.8	46	79	14	198	29	29	20	21	1.98
43839844--43840044	48	4.2	48	85	2	242	26	24	16	32	1.96
43843795--43843865	27	2.6	27	75	4	72	36	26	7	29	1.83
43843849--43843972	27	4.6	27	85	2	160	42	18	7	31	1.77
43843833--43843944	54	2.1	53	80	8	127	40	21	6	32	1.78
43843849--43843972	54	2.3	54	90	0	185	42	18	7	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43843955--43844016	27	2.3	27	91	0	97	40	16	16	27	1.89
43843849--43843998	54	2.8	54	84	4	151	42	18	9	30	1.81
43843849--43844001	81	1.9	81	83	5	202	41	18	9	31	1.82
43844637--43844733	28	3.5	28	88	4	144	45	24	8	21	1.79
43849148--43849358	43	4.9	43	84	9	286	24	16	28	30	1.96
43849148--43849358	86	2.5	86	92	0	350	24	16	28	30	1.96
43852844--43853032	50	3.8	49	82	2	216	25	17	26	29	1.97
43856154--43856338	79	2.3	81	83	7	227	23	27	24	24	2.00
43856147--43856338	40	4.8	39	76	8	163	23	28	23	24	2.00
43864192--43864376	79	2.3	81	83	7	227	23	27	24	24	2.00
43864185--43864376	40	4.8	39	76	8	163	23	28	23	24	2.00
43875006--43875190	79	2.3	81	83	7	227	23	27	24	24	2.00
43874999--43875190	40	4.8	39	76	8	163	23	28	23	24	2.00
43925146--43925315	40	4.2	40	85	3	225	21	28	24	25	1.99
43933169--43933296	40	3.2	39	84	5	150	24	22	28	25	2.00
43939948--43940533	206	2.8	206	90	0	904	30	17	22	29	1.97
43942256--43942345	25	3.4	26	76	16	71	36	1	3	58	1.22
43942296--43942413	26	4.8	24	75	16	89	34	4	0	60	1.22
43942296--43942500	8	26.1	8	67	19	78	34	4	0	59	1.25
43942326--43942375	5	10.0	5	75	16	50	34	2	0	64	1.05
43942431--43942502	18	4.1	19	67	20	57	33	2	0	63	1.08
43945054--43945146	27	3.4	27	77	0	96	38	23	6	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43945142--43945264	27	4.6	27	87	4	176	34	16	20	28	1.94
43945142--43945280	27	5.1	27	85	5	174	33	15	21	29	1.94
43945786--43945866	28	3.0	27	85	5	101	22	23	19	34	1.96
43945786--43945900	27	4.3	26	84	5	131	21	22	20	35	1.96
43950781--43950936	43	3.6	43	78	4	136	30	26	17	24	1.97
43950844--43950936	44	2.2	42	78	7	98	34	27	16	21	1.95
43952365--43952455	20	4.6	20	65	10	51	32	20	31	14	1.93
43963911--43963981	34	2.1	34	100	0	142	42	5	11	40	1.64
43970034--43970218	40	4.7	40	82	7	209	23	22	28	25	1.99
43970087--43970251	79	2.1	79	83	6	201	25	20	27	26	1.99
43976821--43976869	22	2.3	21	83	10	64	34	2	4	59	1.28
43979594--43980148	75	7.4	75	77	7	482	24	20	16	38	1.92
43979657--43980070	226	1.8	226	84	7	563	24	19	16	38	1.92
43979562--43980132	301	1.9	301	86	1	822	25	19	15	39	1.92
43979594--43980155	150	3.7	150	77	6	546	24	19	16	38	1.92
43982825--43983032	40	5.2	40	84	0	218	25	22	25	25	2.00
43982826--43983032	80	2.6	80	83	4	247	25	22	26	25	2.00
43993952--43994155	40	5.2	40	79	7	186	25	22	25	25	2.00
43994048--43994155	37	2.9	37	84	2	135	22	23	27	26	1.99
44001929--44002119	80	2.4	80	82	5	224	26	23	26	24	2.00
44001928--44002135	40	5.2	39	80	5	202	25	22	26	25	2.00
44003865--44003916	20	2.6	20	100	0	104	15	36	32	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44008839--44008896	29	2.0	29	100	0	116	37	17	13	31	1.89
44011453--44011550	37	2.6	37	79	3	99	45	14	13	26	1.81
44013771--44013904	39	3.4	39	89	1	160	25	26	21	26	2.00
44013793--44013924	40	3.3	40	91	1	185	25	24	22	28	2.00
44015959--44016061	52	2.0	52	96	3	190	24	5	34	34	1.79
44022451--44022483	2	16.5	2	100	0	66	48	0	0	51	1.00
44023909--44024039	56	2.3	57	88	2	194	33	25	12	29	1.92
44025335--44025503	46	3.7	46	76	13	184	23	20	27	29	1.98
44025328--44025498	93	1.8	93	92	0	288	22	21	27	28	1.99
44025728--44025765	19	2.0	20	85	15	53	36	0	23	39	1.55
44028355--44028525	42	4.0	43	79	8	179	32	26	18	23	1.97
44033188--44033333	44	3.4	42	75	10	120	30	25	17	26	1.97
44035046--44035088	11	3.8	11	80	17	52	32	4	2	60	1.30
44035049--44035092	23	1.9	23	90	0	70	34	4	4	56	1.40
44037530--44037587	29	2.0	30	83	16	77	51	3	0	44	1.18
44037960--44038045	31	2.8	32	89	5	131	24	27	13	33	1.94
44043493--44043542	26	1.9	26	88	8	75	34	2	0	64	1.05
44043726--44043757	4	7.8	4	93	6	55	53	0	0	46	1.00
44043802--44043842	20	2.0	20	100	0	82	56	4	4	34	1.42
44045006--44045036	15	2.1	15	93	0	53	90	0	9	0	0.46
44048695--44048834	40	3.3	40	69	14	127	26	15	26	31	1.96
44048669--44048834	88	1.9	88	93	0	287	26	15	25	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44048822--44048847	13	2.0	13	100	0	52	15	23	30	30	1.95
44055836--44055864	12	2.3	13	94	5	51	27	0	3	68	1.05
44056180--44056242	33	1.9	33	93	0	108	41	15	14	28	1.87
44059490--44059605	43	2.7	43	85	2	126	31	28	16	23	1.96
44082585--44082695	54	2.1	54	94	0	195	38	18	12	30	1.88
44082987--44083018	6	5.5	6	92	7	57	0	12	0	87	0.54
44082987--44083018	11	2.8	12	95	4	57	0	12	0	87	0.54
44082961--44083018	23	2.5	24	80	5	66	6	12	0	81	0.88
44086060--44086153	27	3.4	27	94	1	161	19	24	23	32	1.97
44086924--44087025	43	2.3	44	85	11	131	21	28	24	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378