genome.fa.s1.2.7.7.80.10.50.1000.301.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  301  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91268029--91268164	26	5.2	26	94	0	236	36	25	5	33	1.78
91280504--91280611	45	2.4	45	78	7	114	34	21	19	25	1.96
91280776--91281096	177	1.8	176	79	8	373	27	21	19	30	1.98
91280941--91281417	226	2.1	226	94	0	828	27	22	19	31	1.98
91281382--91281510	45	3.0	43	81	10	129	25	24	20	30	1.98
91280941--91281506	226	2.5	225	87	4	685	27	22	19	30	1.98
91283294--91283349	11	5.0	11	72	10	51	3	10	3	82	0.92
91283294--91283349	20	2.6	22	78	18	64	3	10	3	82	0.92
91283281--91283331	18	2.7	19	81	9	68	1	9	7	80	0.98
91286122--91286161	19	2.1	19	95	0	71	40	22	5	32	1.76
91288294--91288372	23	3.4	21	76	15	59	59	5	2	32	1.33
91289504--91289546	20	2.2	20	84	16	54	0	16	13	69	1.19
91291862--91292101	49	4.8	49	79	7	259	25	17	26	30	1.97
91291861--91292143	150	1.9	150	88	4	428	27	16	26	29	1.97
91295205--91295249	20	2.2	20	88	0	63	42	4	4	48	1.43
91296188--91296231	22	2.0	21	82	4	52	45	9	2	43	1.48
91301827--91302034	40	5.2	39	82	3	202	25	25	23	25	2.00
91301827--91302033	80	2.6	80	82	3	238	25	26	23	25	2.00
91309869--91310076	40	5.2	39	82	3	202	25	25	23	25	2.00
91309869--91310075	80	2.6	80	82	3	238	25	26	23	25	2.00
91313225--91313444	51	4.4	51	85	4	261	29	29	12	29	1.93
91313225--91313444	101	2.2	101	82	6	259	29	29	12	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91324178--91324395	40	5.5	40	91	2	325	24	22	27	25	2.00
91326886--91327063	52	3.5	51	86	6	238	27	28	14	29	1.95
91332895--91333066	93	1.8	93	96	0	317	27	29	21	20	1.98
91332887--91333062	46	3.8	46	80	12	225	28	28	21	21	1.98
91335445--91335533	30	3.0	30	80	8	101	57	15	16	10	1.65
91335445--91335524	15	5.4	15	80	7	92	58	13	17	10	1.62
91335456--91335533	15	5.2	15	78	9	79	56	15	16	11	1.67
91338475--91338647	46	3.8	46	79	14	214	28	29	21	20	1.98
91338483--91338652	91	1.8	92	94	2	306	27	30	21	20	1.98
91342322--91342435	29	4.0	29	89	1	167	24	12	33	29	1.92
91349519--91349544	12	2.2	12	100	0	52	30	0	0	69	0.89
91352339--91352375	15	2.5	15	100	0	74	54	13	5	27	1.61
91353223--91353267	19	2.4	18	88	7	63	15	0	6	77	0.96
91364976--91365244	44	6.2	44	87	3	379	31	13	27	27	1.94
91364976--91365468	88	5.5	88	73	10	401	30	13	27	27	1.95
91364976--91365468	132	3.7	132	81	10	577	30	13	27	27	1.95
91364996--91365420	88	4.6	95	81	11	442	32	13	26	27	1.94
91365238--91365468	44	5.2	44	87	1	320	30	14	27	27	1.95
91365180--91365296	58	2.0	58	90	3	182	33	14	28	23	1.94
91365087--91365390	146	2.1	146	90	2	468	33	14	26	25	1.94
91365048--91365417	190	1.9	190	90	0	587	31	14	26	26	1.95
91365007--91365463	234	2.0	234	90	0	718	31	13	27	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91366681--91366716	17	2.1	17	89	0	54	30	0	0	69	0.89
91367418--91367465	19	2.5	20	82	3	53	16	2	8	72	1.18
91368921--91368961	18	2.4	17	88	8	57	75	4	19	0	0.98
91371780--91371965	41	4.6	40	82	2	201	32	13	31	22	1.93
91380013--91380088	40	1.9	40	86	5	109	32	25	14	27	1.94
91388717--91388894	52	3.5	51	86	6	238	27	29	14	29	1.95
91394361--91394485	29	4.3	29	89	1	189	24	13	32	29	1.94
91401568--91401593	12	2.2	12	100	0	52	30	0	0	69	0.89
91405246--91405290	19	2.4	18	88	7	63	15	0	6	77	0.96
91416522--91416705	40	4.6	40	82	4	174	28	22	26	23	1.99
91418151--91418223	26	2.8	26	76	2	83	35	8	16	39	1.78
91421002--91421095	31	3.1	31	96	1	172	23	22	15	38	1.93
91421385--91421444	20	3.0	20	90	0	102	33	20	11	35	1.88
91421487--91421534	25	1.9	25	86	0	69	25	16	25	33	1.96
91422688--91422752	27	2.4	27	84	5	87	20	24	20	35	1.96
91422867--91422949	27	3.1	27	75	13	82	26	6	26	40	1.79
91422894--91422951	26	2.2	27	87	3	82	27	3	27	41	1.72
91422929--91423192	27	9.9	27	85	3	318	40	8	22	28	1.83
91422931--91423192	133	2.0	135	87	1	384	40	8	22	28	1.83
91422903--91423219	27	11.9	27	81	4	221	38	8	23	30	1.84
91422928--91423219	160	1.8	161	83	3	392	39	8	22	29	1.84
91423187--91423418	27	8.7	26	84	4	234	30	8	21	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91423242--91423418	27	6.7	27	88	3	236	31	7	20	41	1.79
91423187--91423436	53	4.7	53	82	4	229	31	8	20	39	1.82
91423269--91423435	27	6.3	26	86	3	165	31	7	19	41	1.79
91426222--91426315	31	3.1	31	96	1	172	23	22	15	38	1.93
91426605--91426664	20	3.0	20	90	0	102	33	20	11	35	1.88
91426707--91426754	25	1.9	25	86	0	69	25	16	25	33	1.96
91427908--91427972	27	2.4	27	84	5	87	20	24	20	35	1.96
91428026--91428081	27	2.1	26	83	9	69	39	12	10	37	1.78
91428088--91428174	27	3.2	27	80	7	97	27	5	25	41	1.78
91428152--91428417	27	9.9	27	86	3	347	39	8	23	28	1.84
91428125--91428650	54	9.8	54	80	4	229	35	8	21	34	1.84
91428424--91428488	27	2.4	27	89	0	103	32	12	18	36	1.88
91428467--91428645	27	6.7	27	88	1	236	30	7	19	42	1.78
91428413--91428644	81	2.9	78	82	8	241	30	8	20	40	1.81
91428495--91428662	27	6.3	26	86	2	174	31	7	18	42	1.77
91435047--91435126	39	2.1	39	90	0	124	38	18	13	28	1.89
91443607--91443655	23	2.1	24	92	3	82	10	10	14	65	1.47
91444191--91444266	25	3.0	25	72	14	66	38	0	1	60	1.05
91444193--91444272	32	2.5	31	78	13	83	38	0	1	60	1.05
91444211--91444266	21	2.8	20	74	17	53	35	0	1	62	1.06
91445541--91445580	15	2.5	17	84	8	57	62	0	2	35	1.09
91454446--91454766	47	6.8	49	74	11	226	27	18	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91454448--91454654	46	4.5	46	75	15	144	28	17	30	23	1.97
91454447--91454767	146	2.3	136	80	7	349	27	18	30	24	1.98
91458826--91458858	12	2.8	12	95	0	57	42	27	30	0	1.56
91460717--91460789	21	3.5	21	86	0	65	42	15	24	17	1.88
91460730--91460799	21	3.3	21	93	0	113	40	11	27	21	1.87
91463284--91463340	20	2.9	19	74	12	53	47	15	0	36	1.46
91465669--91465739	27	2.6	27	93	2	115	29	28	14	28	1.95
91471994--91472161	40	4.2	39	81	6	167	26	22	26	24	2.00
91476781--91476850	27	2.6	27	93	2	113	30	28	14	27	1.95
91478722--91478811	41	2.1	43	81	4	103	30	31	17	21	1.96
91479944--91479976	15	2.2	15	89	10	50	54	12	0	33	1.37
91484976--91485098	29	4.2	29	87	2	158	32	15	28	23	1.95
91499523--91499647	49	2.6	49	77	12	132	29	23	28	18	1.98
91499621--91499768	49	3.2	47	83	6	167	27	20	28	23	1.99
91502922--91503107	40	4.7	40	85	5	209	26	25	21	26	2.00
91511158--91511226	33	2.1	32	86	2	93	42	14	2	40	1.61
91511441--91511528	29	3.0	29	82	9	99	30	21	4	43	1.73
91513263--91513558	27	10.5	28	77	12	207	29	22	8	39	1.84
91513245--91513357	54	2.1	54	90	3	174	30	23	9	35	1.87
91513262--91513558	81	3.5	81	76	13	294	28	23	8	39	1.84
91513262--91513558	54	5.3	55	78	10	280	28	23	8	39	1.84
91513388--91513469	38	2.2	38	84	0	101	24	31	7	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91513331--91513514	92	2.0	92	84	2	244	27	25	8	39	1.84
91513307--91513541	119	2.0	119	87	1	337	27	24	8	40	1.83
91513277--91513555	146	1.9	145	86	3	400	28	23	8	39	1.83
91513510--91513735	27	8.3	27	74	10	156	38	19	8	33	1.82
91513537--91513762	54	4.1	54	76	6	213	38	19	9	31	1.84
91513426--91513585	81	2.0	81	81	2	187	31	20	8	40	1.81
91513780--91513857	27	2.9	27	77	11	88	35	21	20	21	1.96
91515093--91515139	20	2.3	20	96	0	85	36	14	19	29	1.92
91515093--91515139	9	4.6	11	75	20	57	36	14	19	29	1.92
91515194--91515384	24	8.0	23	88	6	267	29	22	21	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378