genome.fa.s1.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  214  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63657932--63657977	17	2.5	19	74	22	53	34	23	17	23	1.96
63660394--63660469	39	1.9	39	89	0	116	30	5	19	44	1.73
63660397--63660491	39	2.4	39	79	6	111	32	4	20	43	1.71
63662603--63662800	71	2.8	70	92	3	294	33	17	28	20	1.95
63662669--63662786	41	3.1	41	60	28	98	32	17	28	21	1.96
63662637--63662800	71	2.3	71	100	0	328	35	17	28	18	1.94
63670168--63670365	71	2.8	70	92	3	294	33	17	28	20	1.95
63670234--63670351	41	3.1	41	60	28	98	32	17	28	21	1.96
63670202--63670365	71	2.3	71	100	0	328	35	17	28	18	1.94
63672180--63672243	31	2.1	31	100	0	128	31	34	15	18	1.93
63672502--63672652	51	3.0	51	88	0	239	33	26	7	32	1.85
63672750--63672838	33	2.7	33	80	3	90	22	43	4	29	1.73
63673457--63673667	117	1.8	117	89	0	332	42	27	7	22	1.79
63673854--63673898	16	2.7	16	93	6	72	28	0	31	40	1.57
63676236--63676306	36	2.0	36	100	0	142	39	11	18	30	1.86
63683808--63683960	40	3.8	40	77	9	134	26	27	22	23	1.99
63689247--63689430	40	4.6	40	82	9	223	25	23	26	25	2.00
63689247--63689430	80	2.3	80	86	5	248	25	23	26	25	2.00
63691555--63691597	2	21.5	2	100	0	86	51	0	0	48	1.00
63692901--63692984	43	2.0	43	81	9	100	28	27	17	26	1.98
63694561--63694610	20	2.4	22	83	10	68	56	4	0	40	1.18
63696104--63696142	16	2.4	17	86	4	53	53	10	7	28	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63710859--63711175	48	6.6	48	93	0	537	35	7	27	29	1.85
63710863--63711178	143	2.2	144	93	0	535	35	7	27	28	1.85
63711348--63711487	37	3.8	37	98	0	262	22	20	32	25	1.98
63714562--63714848	53	5.3	54	80	6	321	23	23	17	35	1.95
63714573--63714848	55	5.1	53	80	8	297	22	23	17	36	1.95
63714573--63714857	108	2.6	108	91	1	437	22	23	17	36	1.95
63715319--63715420	50	2.0	50	96	0	186	39	18	0	41	1.57
63718563--63718765	40	5.1	40	80	3	212	24	21	27	26	1.99
63725886--63725911	2	13.0	2	100	0	52	50	0	0	50	1.00
63726782--63726984	40	5.1	40	83	3	239	24	21	28	26	1.99
63729819--63729969	40	3.8	40	77	13	141	25	24	27	22	2.00
63729856--63729985	40	3.2	40	81	2	163	23	23	28	24	2.00
63737808--63737958	40	3.8	40	77	11	141	26	24	27	21	2.00
63737845--63737974	40	3.2	40	79	2	154	23	23	28	23	2.00
63737807--63737974	80	2.1	80	82	6	207	26	23	27	22	2.00
63742231--63742454	40	5.6	40	86	6	310	25	26	23	24	2.00
63742231--63742454	83	2.8	80	88	4	317	25	26	23	24	2.00
63749951--63750172	40	5.6	40	85	8	301	25	27	22	24	2.00
63771520--63771690	93	1.8	93	88	2	263	29	29	19	21	1.98
63771512--63771687	46	3.8	47	76	10	182	30	28	19	21	1.97
63774092--63774144	15	3.6	14	77	7	61	56	11	18	13	1.66
63775570--63775756	71	2.7	68	93	5	281	18	28	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63775593--63775756	71	2.3	71	100	0	328	18	28	17	35	1.94
63775593--63775790	71	2.8	70	92	3	276	20	28	17	33	1.95
63778938--63778982	22	2.0	22	91	0	72	42	8	11	37	1.72
63779953--63780024	32	2.2	33	80	11	87	26	11	20	41	1.86
63780049--63780096	16	2.9	16	84	6	51	31	0	27	41	1.56
63785758--63786098	49	6.8	49	84	4	376	26	17	26	29	1.98
63785751--63786085	103	3.3	98	82	6	384	26	17	26	28	1.98
63785751--63786098	152	2.3	150	81	2	437	26	17	26	28	1.98
63796247--63796316	35	2.0	35	97	0	131	41	20	14	24	1.89
63800131--63800244	50	2.3	50	80	4	131	35	16	12	35	1.86
63809802--63810067	46	5.7	46	71	14	156	28	19	28	23	1.99
63812212--63812385	50	3.5	50	82	3	190	27	17	25	30	1.97
63814185--63814264	27	3.0	27	83	0	97	33	20	18	27	1.96
63814247--63814344	27	3.6	27	84	4	126	38	20	9	31	1.84
63814220--63814343	54	2.3	54	80	5	144	37	20	12	29	1.90
63814327--63814387	27	2.3	27	94	0	104	40	22	6	29	1.79
63814327--63814399	27	2.7	27	89	4	94	39	26	6	27	1.81
63814393--63814694	27	11.2	27	92	0	415	28	22	8	40	1.82
63814339--63814694	81	4.4	81	82	3	376	30	22	8	38	1.83
63814931--63814982	27	2.0	26	84	3	68	17	26	21	34	1.95
63815869--63816093	124	1.8	124	84	1	308	31	9	23	35	1.87
63816088--63816217	40	3.2	40	82	4	156	23	25	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63817662--63817727	25	2.6	25	95	0	114	18	22	12	46	1.81
63817631--63817727	6	15.8	6	68	19	58	18	20	13	47	1.82
63818519--63818569	22	2.3	22	96	0	93	17	33	21	27	1.96
63819620--63819702	27	3.1	27	87	0	121	31	18	21	28	1.97
63819684--63819839	27	5.9	27	77	8	122	37	21	9	30	1.86
63819619--63819728	54	2.0	54	80	3	123	32	20	18	29	1.96
63819763--63819836	26	2.8	27	87	6	98	40	25	9	24	1.85
63819828--63820101	27	10.2	27	89	0	334	29	22	7	40	1.81
63819801--63820101	134	2.2	135	87	0	433	30	22	7	39	1.83
63821762--63821844	27	3.1	26	78	13	87	32	18	20	28	1.96
63821826--63821982	27	5.9	27	75	8	142	38	21	9	30	1.85
63821971--63822299	27	12.2	27	87	1	408	30	21	6	41	1.80
63821957--63822299	81	4.2	81	86	1	472	31	21	6	40	1.80
63822620--63822647	2	14.0	2	100	0	56	50	0	0	50	1.00
63822852--63822899	12	3.9	12	79	15	62	22	20	8	47	1.77
63824767--63824845	26	3.0	26	81	3	95	34	20	17	27	1.95
63824828--63824985	27	5.9	27	81	5	149	37	22	9	30	1.86
63824947--63825020	27	2.7	27	83	8	80	31	25	10	32	1.90
63824920--63825275	54	6.6	54	81	0	343	30	21	8	39	1.83
63824920--63825265	81	4.3	81	83	0	388	30	20	8	39	1.83
63824974--63825275	27	11.2	27	85	1	363	29	20	8	42	1.81
63824974--63825275	81	3.7	81	87	1	417	29	20	8	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63825511--63825562	27	2.0	26	84	3	68	17	26	21	34	1.95
63825619--63825678	27	2.3	26	85	2	75	21	23	20	35	1.96
63825825--63825894	25	2.8	25	93	0	122	18	22	12	45	1.83
63825797--63825894	31	3.4	31	78	16	127	19	21	13	45	1.84
63825797--63825894	6	15.8	6	69	17	58	19	21	13	45	1.84
63827766--63827832	27	2.5	27	82	0	80	32	16	25	25	1.96
63827831--63827980	27	5.6	27	82	3	149	40	22	8	29	1.83
63827977--63828303	27	12.1	27	88	0	368	30	21	6	40	1.79
63827939--63828303	81	4.5	81	83	3	396	32	21	7	39	1.80
63828829--63828926	6	15.8	6	68	17	58	19	19	13	47	1.81
63828860--63828926	25	2.7	25	92	0	98	19	20	11	47	1.81
63828829--63828926	31	3.4	30	75	16	107	19	19	13	47	1.81
63829945--63829995	25	2.0	25	100	0	102	41	3	23	31	1.73
63832153--63832362	27	7.8	27	82	4	201	38	20	9	30	1.85
63832227--63832410	81	2.3	82	80	3	203	37	20	9	32	1.85
63832400--63832503	27	3.9	27	75	7	88	34	16	23	25	1.95
63832934--63832998	22	3.0	22	82	8	87	20	21	23	35	1.96
63833157--63833258	27	3.8	27	79	5	107	20	22	20	36	1.95
63833403--63833475	31	2.4	31	92	0	119	19	15	15	50	1.78
63833418--63833520	6	16.8	6	71	18	70	20	16	16	46	1.84
63833418--63833511	37	2.5	37	86	3	118	20	17	15	46	1.84
63838063--63838096	17	1.9	17	88	5	50	14	44	29	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63840995--63841086	39	2.4	39	96	0	166	34	8	13	43	1.74
63856206--63856409	40	5.1	40	85	1	228	34	21	17	26	1.96
63864940--63865009	27	2.5	28	93	2	115	27	14	28	30	1.95
63864940--63865021	27	3.0	27	84	8	69	28	15	25	30	1.96
63872868--63872937	27	2.5	28	93	2	115	27	14	28	30	1.95
63872868--63872949	27	3.0	27	84	8	69	28	15	25	30	1.96
63877707--63877822	50	2.3	52	86	3	155	31	15	13	38	1.87
63878008--63878057	27	1.9	25	88	8	73	26	0	18	56	1.42
63881096--63881227	29	4.5	29	97	1	246	24	24	14	37	1.92
63881096--63881227	59	2.3	59	97	1	248	24	24	14	37	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378