Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  363  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108830016--108830082
29
2.3
29
87
2
100
40
16
4
38
1.69
108834839--108834910
29
2.5
28
78
17
76
44
1
4
50
1.30
108836445--108836505
31
2.0
31
87
6
88
27
4
11
55
1.56
108837280--108837305
13
2.0
13
100
0
52
23
15
15
46
1.83
108840413--108840461
24
2.1
23
88
7
73
48
2
6
42
1.39
108847044--108847068
2
12.5
2
100
0
50
48
0
0
52
1.00
108856014--108856067
20
2.6
21
82
11
67
35
0
7
57
1.27
108858097--108858143
25
2.0
24
87
8
69
12
27
21
38
1.90
108858075--108858155
25
3.4
23
73
17
58
13
32
23
30
1.93
108858217--108858333
23
5.0
23
76
12
121
15
27
24
32
1.95
108858201--108858334
23
5.6
25
74
14
77
16
26
24
32
1.96
108858514--108858606
37
2.5
37
96
0
168
26
18
29
25
1.98
108863332--108863380
18
2.8
17
81
6
53
32
8
4
55
1.48
108863542--108863627
22
3.7
22
71
19
68
30
2
6
60
1.35
108863645--108863690
18
2.5
19
82
10
60
36
2
4
56
1.31
108863754--108863779
11
2.4
11
100
0
52
38
0
7
53
1.30
108863972--108864019
23
1.9
27
84
16
68
27
4
0
68
1.07
108868581--108868613
3
11.0
3
100
0
66
33
0
0
66
0.92
108872598--108872634
16
2.3
16
90
0
56
35
10
2
51
1.51
108872855--108872913
30
2.0
30
89
0
91
32
13
11
42
1.81
108874910--108874940
16
1.9
16
93
0
53
41
9
0
48
1.36
108881586--108881654
35
2.0
35
97
0
129
34
30
5
28
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108882829--108882873
15
2.9
16
75
21
51
33
11
0
55
1.35
108883164--108883268
52
2.0
52
96
0
192
20
23
16
39
1.92
108893685--108893720
11
3.2
11
88
7
54
80
0
19
0
0.71
108893681--108893714
15
2.2
16
89
5
52
85
0
14
0
0.60
108896452--108896506
22
2.5
22
85
8
76
56
5
1
36
1.33
108898756--108898785
15
2.0
15
93
0
51
13
0
3
83
0.77
108899720--108899791
34
2.2
33
82
7
83
38
4
1
55
1.28
108901647--108901690
23
1.9
23
81
9
54
52
2
2
43
1.26
108903016--108903123
51
2.1
51
89
0
162
27
20
24
27
1.99
108905790--108905832
21
2.0
21
90
0
68
30
13
9
46
1.75
108907911--108907958
19
2.6
17
78
12
51
64
4
12
18
1.43
108910930--108911139
40
5.2
40
88
2
305
21
28
24
25
1.99
108919064--108919273
40
5.2
40
88
2
305
21
28
24
25
1.99
108923317--108923445
44
2.8
45
82
4
152
34
13
24
27
1.93
108929268--108929396
44
2.8
45
82
4
152
34
13
24
27
1.93
108948791--108948852
30
2.1
30
100
0
124
40
19
3
37
1.68
108952581--108952611
16
1.9
16
93
0
53
35
12
16
35
1.87
108954537--108954564
3
9.3
3
100
0
56
32
0
35
32
1.58
108959151--108959192
3
13.7
3
85
14
59
30
2
2
64
1.19
108959966--108960009
23
2.0
21
86
8
61
63
6
2
27
1.31
108962820--108963094
46
6.0
46
93
0
433
40
15
22
22
1.91
108965381--108965452
29
2.5
28
86
6
92
30
15
26
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108970455--108970504
22
2.4
22
86
6
68
40
2
4
54
1.31
108970896--108971381
89
5.3
89
82
6
337
30
19
24
26
1.98
108970850--108971618
44
17.0
44
73
10
478
30
18
23
27
1.98
108971117--108971396
45
5.9
51
75
15
228
31
19
22
26
1.98
108971072--108971352
95
2.9
96
89
3
415
30
19
23
26
1.98
108971117--108971286
51
3.5
50
76
14
210
30
21
21
26
1.98
108973846--108973876
7
4.6
7
96
4
55
25
0
0
74
0.82
108976799--108976884
18
4.7
18
80
1
91
40
12
9
37
1.76
108976799--108976885
36
2.4
37
80
1
113
40
12
10
36
1.78
108977098--108977128
6
5.2
6
100
0
62
51
16
16
16
1.77
108977250--108977285
16
2.2
17
90
9
58
33
5
0
61
1.19
108978057--108978088
6
5.7
6
96
3
50
53
0
0
46
1.00
108978056--108978093
10
3.5
11
86
13
53
55
0
0
44
0.99
108980043--108980403
46
7.8
46
91
0
490
19
23
13
42
1.87
108982486--108982534
11
4.3
11
82
10
62
59
6
0
34
1.22
108984779--108984831
27
2.0
27
85
7
72
16
0
13
69
1.18
108986936--108986978
20
2.1
21
86
4
61
20
2
6
69
1.23
108987192--108987227
19
1.9
18
88
5
54
5
11
11
72
1.28
108987584--108987615
6
5.5
6
96
3
57
0
12
0
87
0.54
108987675--108987740
20
3.3
20
80
0
78
13
15
12
59
1.62
108987716--108987764
23
2.2
23
88
3
73
8
10
10
71
1.31
108987802--108987846
20
2.3
21
77
14
51
20
13
8
57
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108987981--108988027
20
2.4
19
80
13
60
19
17
8
55
1.67
108989091--108989136
21
2.2
21
100
0
92
19
10
26
43
1.84
108993704--108993825
60
2.0
60
95
0
217
33
13
19
32
1.91
108995775--108995940
35
4.6
35
84
8
192
33
24
10
31
1.90
108995770--108995940
74
2.4
73
83
9
217
33
23
11
31
1.90
109003260--109003425
35
4.6
35
84
8
192
33
24
10
31
1.90
109003255--109003425
74
2.4
73
83
9
217
33
23
11
31
1.90
109006283--109006325
15
2.8
15
80
13
52
51
0
0
48
1.00
109009388--109009429
22
1.9
22
90
0
66
45
14
2
38
1.58
109012610--109012668
27
2.2
28
88
8
88
59
0
5
35
1.20
109012625--109012676
27
1.9
27
88
0
77
59
1
3
34
1.27
109014220--109014247
14
2.0
14
100
0
56
64
0
0
35
0.94
109014236--109014305
28
2.4
29
79
15
74
60
2
2
34
1.26
109014262--109014306
21
2.1
21
84
8
56
64
2
4
28
1.25
109014455--109014813
184
2.0
182
96
1
655
39
9
6
44
1.63
109015991--109016015
6
4.2
6
100
0
50
20
32
16
32
1.94
109025844--109025873
14
2.1
14
93
0
51
86
0
13
0
0.57
109031850--109031892
20
2.1
21
86
4
61
58
0
0
41
0.98
109036864--109036904
21
2.0
21
90
0
64
29
21
29
19
1.98
109041003--109041040
20
1.9
20
84
10
51
31
5
2
60
1.33
109043151--109043188
12
3.2
12
81
7
51
71
0
7
21
1.11
109043797--109043826
10
2.9
10
95
5
51
26
20
3
50
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109044960--109045099
27
5.2
28
88
5
166
35
21
24
18
1.95
109045204--109045282
27
3.0
27
81
5
81
34
11
21
32
1.89
109046709--109046792
26
3.2
26
96
0
159
36
22
4
35
1.76
109049115--109049139
11
2.3
11
100
0
50
16
0
0
84
0.63
109055660--109055709
21
2.3
21
80
19
50
64
2
2
32
1.16
109072668--109072720
16
3.2
17
75
15
58
60
1
20
16
1.45
109076266--109076379
60
1.9
59
85
7
158
36
9
18
35
1.84
109078147--109078192
17
2.9
16
76
17
51
19
2
2
76
1.00
109085437--109085495
26
2.3
24
73
18
57
55
1
8
33
1.40
109085686--109085748
24
2.5
26
85
10
78
58
4
3
33
1.35
109085987--109086074
28
3.1
28
73
15
74
56
2
9
31
1.43
109088588--109088618
7
4.4
7
91
0
53
35
3
0
61
1.12
109089195--109089228
13
2.6
14
90
9
54
76
0
8
14
1.01
109102141--109102195
27
2.0
27
86
6
76
47
7
7
38
1.59
109105886--109106275
180
2.2
181
81
5
450
27
24
20
27
1.99
109106066--109106185
44
2.7
44
96
0
213
26
26
21
25
2.00
109105751--109106370
135
4.6
133
74
8
398
27
23
20
28
1.99
109106108--109106322
47
4.7
46
79
8
199
28
25
18
28
1.98
109106020--109106366
45
7.7
45
76
6
245
26
24
20
28
1.99
109106008--109106366
92
3.9
92
81
6
417
26
24
20
28
1.99
109120974--109121081
26
4.2
26
92
0
180
34
7
23
35
1.83
109126972--109127201
46
4.8
46
78
13
200
21
19
30
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109127019--109127147
53
2.6
50
90
7
192
22
18
30
28
1.97
109130167--109130246
15
5.4
15
80
12
85
10
17
12
60
1.59
109130158--109130233
30
2.5
30
81
12
93
11
15
14
57
1.65
109132629--109132810
46
3.8
46
78
12
195
22
20
28
29
1.98
109134471--109134515
23
1.9
24
86
4
65
44
0
0
55
0.99
109145730--109145863
30
4.4
29
71
12
101
43
2
5
49
1.37
109152860--109152899
18
2.2
18
86
8
55
40
2
2
55
1.27
109153933--109153976
23
2.0
23
86
13
65
43
38
2
15
1.60
109154591--109154633
20
2.2
20
82
0
50
0
58
2
39
1.11
109160624--109160653
16
1.9
15
93
6
51
70
0
3
26
1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378