genome.fa.s1.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  144  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41166537--41166744	53	3.9	54	79	4	204	22	23	18	36	1.95
41166725--41166844	47	2.6	47	95	0	222	25	24	13	36	1.92
41166816--41166970	47	3.3	46	77	7	136	22	23	19	34	1.97
41167587--41167650	30	2.1	30	82	8	76	31	20	10	37	1.87
41180459--41180753	143	2.1	141	98	1	563	21	10	29	38	1.87
41181397--41181508	29	3.9	29	91	0	161	31	14	29	25	1.94
41181400--41181526	29	4.4	29	87	2	94	31	14	29	24	1.95
41188410--41188704	143	2.1	141	98	1	563	21	10	29	38	1.87
41189346--41189477	29	4.6	29	88	0	174	28	15	31	24	1.95
41191368--41191420	20	2.7	20	93	0	88	18	37	22	20	1.94
41197163--41197494	48	6.9	47	79	5	342	25	28	18	27	1.98
41197163--41197494	96	3.4	96	87	0	466	25	28	18	27	1.98
41197163--41197494	144	2.3	144	82	4	400	25	28	18	27	1.98
41205561--41205710	57	2.6	57	78	7	151	30	22	19	28	1.98
41206251--41206291	20	2.0	20	90	0	64	36	14	2	46	1.58
41212207--41212378	46	3.7	46	78	14	192	28	27	21	22	1.99
41212212--41212382	93	1.8	93	91	2	281	28	28	21	22	1.99
41212801--41212860	30	2.0	30	90	0	93	30	25	8	36	1.85
41215968--41216180	49	4.4	49	95	1	349	30	9	31	29	1.88
41216282--41216366	37	2.3	37	95	0	152	24	20	34	21	1.97
41223885--41224054	46	3.7	45	79	12	195	29	27	20	22	1.98
41223890--41224058	91	1.8	93	92	2	288	28	28	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41224473--41224533	30	2.0	30	90	0	95	31	24	8	36	1.85
41232317--41232347	16	1.9	16	93	0	53	58	12	0	29	1.35
41234541--41234807	47	5.7	45	75	10	234	28	20	29	21	1.98
41244486--41244527	21	2.0	21	100	0	84	23	14	14	47	1.80
41251653--41251889	115	2.1	116	79	5	248	21	21	31	25	1.98
41252126--41252221	26	3.7	26	81	1	111	38	20	10	30	1.86
41252215--41252340	27	4.7	27	84	1	157	35	18	22	23	1.95
41252471--41252543	27	2.7	27	85	8	87	23	23	20	32	1.98
41256928--41257033	27	3.9	27	81	6	117	37	18	9	33	1.83
41257012--41257165	27	5.7	27	88	0	211	34	20	21	24	1.97
41257295--41257375	27	3.0	26	80	7	90	22	22	20	34	1.97
41257540--41257611	32	2.2	34	82	5	85	27	25	23	23	2.00
41265068--41265277	40	5.2	40	87	2	305	25	24	28	21	1.99
41273203--41273411	40	5.2	40	87	3	305	24	24	28	22	1.99
41279433--41279551	60	2.0	60	93	0	202	33	11	10	43	1.76
41284390--41284508	60	2.0	60	93	0	202	43	10	11	33	1.76
41286180--41286264	43	2.0	43	81	9	102	23	16	24	35	1.95
41294519--41294581	29	2.1	30	85	2	83	33	4	14	47	1.65
41295295--41295365	30	2.4	29	85	4	88	35	1	1	61	1.13
41295563--41295589	14	1.9	14	100	0	54	48	7	22	22	1.75
41295571--41295624	26	2.1	26	96	0	99	50	3	12	33	1.59
41295679--41295750	26	2.7	27	78	6	94	27	8	9	54	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41296299--41296345	24	2.0	23	91	4	76	25	0	4	70	1.05
41296502--41296557	24	2.3	25	81	3	69	67	3	0	28	1.07
41297930--41297982	27	2.0	26	85	10	72	28	3	15	52	1.59
41298033--41298057	4	6.2	4	100	0	50	24	0	0	76	0.80
41298681--41298709	15	1.9	15	100	0	58	24	0	20	55	1.44
41304065--41304172	29	3.7	29	81	7	103	16	0	31	50	1.51
41304118--41304172	14	3.9	14	77	15	60	14	0	30	54	1.41
41305292--41305418	57	2.2	58	84	5	161	27	3	39	29	1.74
41305410--41305452	9	5.1	9	78	16	56	13	0	62	23	1.31
41309081--41309397	158	2.0	158	90	1	492	36	15	16	31	1.90
41326234--41326351	43	2.7	43	79	8	116	27	19	25	27	1.99
41330777--41330871	29	3.2	29	74	15	88	32	24	5	37	1.78
41335741--41335782	9	4.6	9	80	16	50	30	2	0	66	1.04
41336013--41336061	24	2.1	23	85	7	64	59	4	18	18	1.53
41337758--41337875	58	2.0	58	100	0	236	26	1	23	48	1.61
41340474--41340535	25	2.5	26	82	10	69	48	3	17	30	1.63
41343077--41343181	23	4.6	22	76	13	88	25	18	18	38	1.93
41347703--41347875	45	3.8	46	79	13	187	21	21	28	28	1.98
41347707--41347877	46	3.7	45	79	12	204	21	21	28	29	1.98
41348101--41348138	19	2.0	20	85	15	53	36	0	23	39	1.55
41355266--41355438	46	3.7	46	79	10	208	21	20	27	29	1.98
41355263--41355433	93	1.8	93	93	0	297	21	21	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41355663--41355700	19	2.0	20	85	15	53	36	0	23	39	1.55
41359970--41360187	24	9.1	24	96	0	384	20	17	25	36	1.94
41367950--41368168	24	9.1	24	97	0	384	20	17	25	36	1.94
41370798--41370838	21	2.0	21	90	9	68	34	19	34	12	1.89
41372168--41372250	24	3.6	23	80	8	80	27	19	19	33	1.96
41385243--41385372	27	4.8	27	88	0	179	28	23	8	40	1.83
41385243--41385392	54	2.8	54	85	0	183	29	22	8	39	1.84
41385230--41385570	27	12.7	27	78	7	149	36	22	9	31	1.85
41385351--41385652	54	5.6	54	75	8	229	39	21	9	29	1.86
41385365--41385569	81	2.6	80	82	4	227	41	21	9	27	1.84
41385324--41385632	27	11.4	27	77	8	128	37	20	10	31	1.86
41385687--41385745	27	2.2	26	79	8	66	33	20	23	22	1.97
41386558--41386627	25	2.8	25	88	0	113	25	27	22	24	2.00
41386846--41387079	31	7.5	31	95	0	387	29	16	25	29	1.96
41389643--41389827	48	3.8	48	82	4	228	28	16	28	26	1.97
41398896--41399031	68	1.9	71	85	8	190	39	4	6	49	1.49
41408860--41408905	13	3.7	12	82	8	56	45	2	8	43	1.47
41410473--41410501	14	2.0	15	93	6	51	34	0	10	55	1.34
41411776--41411909	42	3.1	44	77	14	136	23	15	28	32	1.95
41411814--41411939	42	2.9	41	79	10	128	23	15	27	32	1.95
41419418--41419542	42	2.9	44	73	11	125	23	19	26	31	1.98
41419411--41419581	43	4.0	42	68	17	102	23	18	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41422313--41422492	40	4.6	40	90	2	267	24	23	26	25	2.00
41430504--41430727	40	5.6	40	87	3	306	24	23	26	25	2.00
41430508--41430727	83	2.7	80	88	5	302	23	24	27	25	2.00
41434348--41434472	25	5.0	25	78	7	105	24	16	24	33	1.96
41434348--41434472	49	2.5	49	79	10	130	24	16	24	33	1.96
41435027--41435074	26	1.9	24	83	8	60	43	12	16	27	1.84
41436779--41436989	46	4.6	46	75	10	173	23	28	21	26	1.99
41436779--41436981	47	4.4	43	74	16	130	23	29	21	25	1.99
41436731--41437050	94	3.4	92	77	8	308	22	28	20	27	1.99
41438335--41438373	20	2.0	20	85	10	53	38	12	5	43	1.65
41439071--41439119	23	2.1	23	81	7	55	65	2	26	6	1.27
41444301--41444626	24	14.1	24	89	8	480	36	25	17	20	1.94
41444461--41444496	18	2.0	18	100	0	72	38	27	16	16	1.90
41444461--41444501	18	2.4	17	92	8	66	36	24	19	19	1.95
41452387--41452723	24	14.1	24	96	1	579	35	25	18	20	1.95
41455982--41456084	29	3.6	28	80	5	116	29	33	16	21	1.95
41463457--41463484	14	2.0	14	100	0	56	42	0	0	57	0.99
41465257--41465375	24	5.0	24	89	5	170	26	21	22	28	1.99
41465428--41465465	20	1.9	20	100	0	76	31	21	13	34	1.91
41465428--41465472	20	2.2	20	92	0	72	31	22	13	33	1.92
41465509--41465556	25	1.9	25	91	0	78	25	14	25	35	1.94
41466795--41467298	27	18.7	27	84	4	543	40	8	22	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41466797--41467298	54	9.3	54	85	3	636	40	8	22	28	1.83
41466797--41467298	81	6.2	81	86	4	665	40	8	22	28	1.83
41474640--41474686	23	2.0	23	100	0	94	19	17	21	42	1.89
41474640--41474694	23	2.4	23	90	6	76	20	18	18	43	1.88
41476772--41476879	40	2.7	38	85	8	128	21	29	25	23	1.99
41476731--41476879	80	1.9	80	81	2	183	22	30	24	22	1.99
41488412--41488618	40	5.2	40	83	1	209	26	22	26	25	2.00
41488413--41488603	79	2.4	78	82	6	222	26	23	25	24	2.00
41490676--41490768	47	2.0	47	95	0	168	41	24	11	21	1.87
41492750--41492844	50	1.9	50	93	0	163	46	8	18	26	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378