Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  160  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46644985--46645038
28
1.9
27
85
14
74
72
0
9
18
1.11
46648460--46648496
14
2.6
14
95
0
65
13
27
8
51
1.69
46651229--46651396
40
4.2
40
80
12
184
23
22
28
26
1.99
46651229--46651396
80
2.1
79
87
4
239
23
22
28
26
1.99
46659207--46659374
40
4.2
40
80
12
184
23
22
28
26
1.99
46659207--46659374
80
2.1
79
87
4
239
23
22
28
26
1.99
46661665--46661764
49
2.0
49
94
0
173
30
14
19
37
1.90
46663815--46663862
24
2.0
24
95
0
87
31
12
18
37
1.88
46678936--46679001
32
2.1
32
100
0
132
30
28
15
25
1.96
46681126--46681196
21
3.4
21
84
0
88
26
26
32
14
1.94
46682963--46683014
24
2.2
24
82
6
61
32
21
26
19
1.97
46689661--46689739
39
2.0
39
100
0
158
22
13
27
35
1.93
46689998--46690026
14
2.1
14
100
0
58
20
20
13
44
1.85
46691665--46691761
35
2.8
35
90
0
140
27
28
14
28
1.95
46692557--46693057
57
8.9
57
79
5
500
31
18
13
35
1.90
46692626--46693053
229
1.9
222
82
6
538
30
18
13
36
1.90
46695863--46695977
50
2.3
50
81
3
122
25
17
26
30
1.97
46695908--46696065
51
3.1
51
80
4
124
25
17
26
29
1.98
46701654--46701796
50
2.8
51
82
1
171
24
19
26
29
1.98
46701654--46701840
51
3.7
51
81
2
162
26
18
26
28
1.98
46701721--46701890
51
3.3
50
81
4
153
27
19
26
27
1.99
46705877--46706188
39
8.0
39
87
5
305
30
29
21
18
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46705877--46706188
78
4.0
78
87
2
371
30
29
21
18
1.97
46705901--46706188
155
1.9
156
84
3
393
30
28
21
19
1.97
46706523--46706738
110
2.0
110
100
0
432
23
21
8
46
1.78
46714950--46714989
20
2.0
21
85
9
57
47
12
12
27
1.77
46715381--46715427
14
3.3
15
82
14
55
72
0
4
23
1.02
46716507--46716570
30
2.1
30
97
0
119
17
28
32
21
1.96
46717818--46717856
2
19.5
2
94
0
69
46
0
0
53
1.00
46719525--46719588
26
2.5
26
92
5
103
32
15
10
40
1.82
46731642--46731699
28
2.2
26
81
12
64
36
1
13
48
1.53
46741876--46741922
23
2.0
23
95
0
85
29
14
19
36
1.92
46749956--46750225
147
1.8
146
85
5
384
37
11
12
38
1.80
46749901--46750249
146
2.4
146
82
4
425
36
10
14
38
1.81
46754492--46754533
21
2.0
22
86
13
61
64
2
2
30
1.19
46758978--46759011
15
2.3
15
100
0
68
29
41
0
29
1.57
46759465--46759535
29
2.4
30
79
11
74
36
2
5
54
1.38
46766682--46766714
13
2.6
13
90
4
50
69
0
0
30
0.88
46768443--46768530
35
2.5
35
88
5
124
31
11
15
40
1.83
46772997--46773058
31
2.0
31
100
0
124
16
29
0
54
1.42
46776222--46776271
3
16.3
3
95
4
91
64
2
0
34
1.05
46776566--46776607
19
2.3
18
88
12
59
23
0
4
71
1.05
46778161--46778339
42
4.3
42
77
0
151
23
16
20
40
1.91
46779583--46779614
14
2.3
14
94
0
55
34
34
0
31
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46779635--46779677
21
2.2
20
91
8
70
41
11
13
32
1.81
46782972--46783012
6
6.5
6
83
10
55
17
0
4
78
0.93
46785882--46786016
35
3.7
37
80
10
161
31
11
22
34
1.91
46785885--46785973
40
2.4
34
85
10
97
33
8
24
32
1.87
46801425--46801609
7
25.9
7
70
12
65
20
0
35
43
1.56
46801430--46801574
57
2.5
57
74
15
147
20
0
34
44
1.57
46802578--46802648
34
2.1
34
91
0
115
25
28
15
30
1.96
46804301--46804367
31
2.2
31
100
0
134
35
2
23
37
1.71
46804332--46805001
23
29.4
23
76
9
561
33
4
22
39
1.75
46804295--46804397
54
1.9
54
86
7
147
36
4
22
35
1.76
46804338--46804840
206
2.5
204
90
3
778
33
4
23
39
1.75
46804612--46804976
135
2.7
135
87
6
533
32
4
23
39
1.74
46804332--46805013
114
6.0
114
75
10
606
33
4
22
39
1.75
46805699--46805894
85
2.3
85
81
6
236
26
17
27
28
1.98
46805699--46805894
42
4.6
43
82
3
218
26
17
27
28
1.98
46806146--46806269
43
2.9
43
75
10
130
33
26
14
25
1.94
46807665--46807836
42
4.1
42
78
3
141
22
17
19
41
1.90
46807665--46807836
84
2.0
84
81
6
197
22
17
19
41
1.90
46808466--46808490
13
1.9
13
100
0
50
24
0
4
72
1.02
46814419--46814443
6
4.2
6
100
0
50
36
0
0
64
0.94
46814599--46814665
33
2.0
33
100
0
134
43
14
11
29
1.82
46815282--46815329
22
2.4
18
78
18
51
58
0
4
37
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46822061--46822107
20
2.3
20
81
0
58
63
0
2
34
1.06
46831642--46831738
45
2.2
45
84
0
122
22
18
11
47
1.80
46834742--46834785
22
2.0
22
86
0
61
52
0
0
47
1.00
46834813--46834845
13
2.5
13
90
9
50
60
0
0
39
0.97
46834805--46834845
14
2.9
14
80
20
50
56
0
0
43
0.99
46834805--46834867
29
2.3
27
79
12
67
53
1
0
44
1.10
46837720--46837760
6
6.8
6
97
0
64
60
0
39
0
0.96
46851225--46851308
32
2.6
32
82
1
105
23
39
17
19
1.92
46856993--46857023
10
3.1
10
95
0
53
6
9
0
83
0.79
46858976--46859017
20
2.0
20
86
9
57
42
4
16
35
1.69
46859619--46859659
21
2.0
21
90
0
64
39
2
21
36
1.67
46864713--46864797
42
2.0
42
97
0
161
47
18
15
18
1.83
46865696--46865725
6
5.0
6
100
0
60
66
16
16
0
1.25
46868964--46868991
14
2.0
14
100
0
56
35
14
14
35
1.86
46875281--46875357
18
4.2
18
83
8
77
50
15
16
16
1.78
46875281--46875339
6
9.8
6
85
7
84
50
15
16
16
1.78
46875881--46876103
27
8.3
27
86
0
248
25
20
18
35
1.95
46875897--46876103
81
2.6
81
89
1
317
25
19
19
35
1.95
46876139--46876320
27
6.7
27
83
1
204
29
8
21
40
1.83
46877381--46877632
39
6.5
39
80
3
283
17
16
31
34
1.92
46877381--46877632
117
2.2
117
87
0
351
17
16
31
34
1.92
46884080--46884303
40
5.6
40
87
3
306
24
23
26
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46884084--46884303
83
2.7
80
88
5
302
23
24
27
25
2.00
46892252--46892472
40
5.6
40
85
5
279
23
23
26
26
2.00
46892256--46892445
82
2.3
80
90
3
283
23
24
27
25
2.00
46895567--46895788
40
5.6
40
86
4
288
23
23
26
26
2.00
46895571--46895761
83
2.3
80
90
4
285
23
24
27
25
2.00
46897230--46897396
40
4.2
40
86
5
214
26
28
21
23
1.99
46905279--46905444
40
4.2
40
86
6
214
26
28
21
24
1.99
46905279--46905444
79
2.1
79
84
5
212
26
28
21
24
1.99
46908788--46908876
43
2.0
44
91
2
144
47
11
13
28
1.77
46909469--46909518
22
2.3
22
93
3
84
18
34
34
14
1.90
46911397--46911441
20
2.2
20
84
7
56
40
11
2
46
1.52
46913290--46913343
27
2.0
27
96
0
99
61
20
0
18
1.35
46913514--46913600
44
2.0
44
88
0
129
48
4
13
33
1.63
46914041--46914074
17
2.0
17
100
0
68
17
17
29
35
1.93
46921210--46921261
3
17.3
3
95
0
95
32
1
0
65
1.04
46923618--46923825
40
5.2
39
82
3
202
25
25
23
25
2.00
46923618--46923824
80
2.6
80
82
3
238
25
26
23
25
2.00
46931669--46931876
40
5.2
39
82
3
202
25
25
23
25
2.00
46931669--46931875
80
2.6
80
82
3
238
25
26
23
25
2.00
46934014--46934044
16
2.0
15
93
6
53
51
25
19
3
1.62
46934293--46934354
26
2.3
27
78
10
74
38
27
8
25
1.84
46934460--46934573
27
4.2
28
86
3
137
18
21
21
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46942602--46942662
12
5.3
12
74
16
58
36
0
3
60
1.13
46942922--46943013
3
32.0
3
78
12
104
35
1
2
60
1.16
46943142--46943176
13
2.7
13
95
0
61
34
0
5
60
1.21
46943139--46943183
13
2.9
16
78
21
60
35
0
4
60
1.17
46945155--46945330
70
2.3
75
83
11
202
41
1
19
38
1.59
46945200--46945350
79
1.9
78
84
5
203
41
1
19
37
1.60
46945511--46945578
34
1.9
36
88
11
106
39
1
23
35
1.64
46945508--46945583
18
4.4
17
77
14
84
42
1
23
32
1.63
46945508--46945589
34
2.4
33
82
13
105
41
1
23
34
1.62
46945508--46945596
17
5.1
18
80
9
80
41
1
23
33
1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378