Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  355  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106475971--106476107
35
3.8
36
84
10
190
38
10
13
37
1.78
106475991--106476095
17
6.1
15
79
16
75
39
8
13
39
1.75
106475963--106476130
73
2.2
73
86
8
223
38
8
14
38
1.77
106475963--106476130
19
8.8
22
80
16
102
38
8
14
38
1.77
106476397--106476433
19
1.9
19
88
0
56
29
0
0
70
0.88
106477621--106477669
22
2.2
23
82
10
57
16
10
10
63
1.52
106488876--106488905
11
2.7
11
89
0
51
60
0
0
40
0.97
106489404--106489457
18
3.2
18
76
21
55
77
0
7
14
0.97
106489420--106489458
17
2.3
17
86
8
53
71
0
10
17
1.12
106489697--106489730
15
2.3
15
94
0
59
5
0
32
61
1.20
106489696--106489735
15
2.5
16
84
12
55
5
2
27
65
1.27
106490672--106490726
13
4.2
13
78
19
53
76
3
0
20
0.94
106490702--106490726
10
2.5
10
100
0
50
80
8
0
12
0.92
106503765--106503796
15
2.0
17
88
11
50
25
21
18
34
1.96
106504179--106504248
35
2.0
35
91
0
113
28
15
14
41
1.86
106509787--106509953
35
4.6
35
85
7
201
33
24
10
31
1.90
106509782--106509953
75
2.4
73
84
8
226
33
23
11
31
1.90
106521954--106521996
18
2.4
18
84
7
61
41
0
0
58
0.98
106522661--106522711
15
3.5
15
69
15
52
52
7
9
29
1.62
106527507--106527544
16
2.4
16
82
8
51
42
0
5
52
1.24
106527693--106527733
22
1.9
21
85
14
57
26
17
26
29
1.97
106527854--106527895
14
3.1
14
76
10
52
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106534233--106534262
15
1.9
16
93
6
53
53
6
3
36
1.44
106539390--106539422
17
1.9
17
93
0
57
60
9
3
27
1.42
106554474--106554532
29
2.0
30
83
3
75
55
3
0
40
1.16
106555520--106555566
24
2.0
24
95
0
85
38
10
21
29
1.87
106556568--106556664
19
5.3
18
72
19
58
61
4
1
32
1.21
106556569--106556609
20
2.1
19
86
13
57
65
4
0
29
1.13
106556559--106556639
28
2.9
26
76
18
83
61
3
1
33
1.21
106556650--106556741
45
2.0
45
81
12
107
61
4
2
31
1.27
106557369--106557447
29
2.6
30
81
16
85
36
1
6
55
1.33
106557357--106557406
20
2.5
19
81
9
64
34
4
4
58
1.36
106557348--106557531
9
19.3
9
64
20
56
35
2
3
58
1.31
106557558--106557599
20
2.0
20
90
4
66
40
2
4
52
1.35
106559239--106559283
15
2.8
16
83
10
56
55
0
0
44
0.99
106561920--106561968
24
2.0
24
88
0
71
24
20
30
24
1.98
106568113--106568194
26
3.1
26
75
1
74
34
21
21
21
1.97
106578673--106578748
40
1.9
40
88
0
116
18
14
31
35
1.91
106579923--106579972
16
3.0
16
83
11
73
68
0
30
2
1.01
106585191--106585250
24
2.5
24
81
8
68
8
11
3
76
1.12
106592235--106592288
19
2.8
20
77
13
67
12
29
35
22
1.91
106593043--106593252
52
4.1
52
75
15
197
31
27
15
25
1.95
106595526--106595558
13
2.6
13
90
4
50
39
0
12
48
1.40
106595952--106596018
24
2.8
24
97
2
127
19
19
4
56
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106605976--106606236
130
2.0
130
100
0
522
37
19
18
24
1.94
106610145--106610239
6
15.0
6
77
10
82
22
3
0
74
0.95
106610148--106610198
3
16.7
3
84
11
68
27
0
0
72
0.85
106613152--106613184
13
2.6
13
90
4
50
39
0
12
48
1.40
106615410--106615460
24
2.1
24
82
7
59
66
0
11
21
1.23
106616618--106616665
20
2.5
19
87
12
71
70
2
2
25
1.09
106618405--106618471
26
2.6
26
81
11
84
47
4
0
47
1.22
106618402--106618492
26
3.6
25
75
13
73
42
4
0
52
1.21
106618451--106618559
24
4.7
24
70
12
68
34
3
0
60
1.21
106618504--106618585
31
2.8
29
80
7
92
31
3
1
63
1.19
106621846--106621952
30
3.6
29
73
2
88
22
25
13
39
1.90
106621883--106622068
60
3.1
60
71
8
173
24
25
12
37
1.91
106621899--106622039
30
4.7
30
77
3
106
25
27
11
35
1.90
106628792--106628856
33
2.0
33
100
0
130
43
12
12
32
1.79
106638384--106638555
46
3.7
45
76
10
177
29
27
20
22
1.99
106638389--106638559
93
1.8
93
89
0
270
28
28
21
22
1.99
106638935--106638994
30
2.0
30
90
0
93
30
25
8
36
1.85
106639873--106639948
40
1.9
40
88
0
116
17
13
32
36
1.88
106645365--106645417
5
10.0
5
80
11
61
41
0
1
56
1.10
106645362--106645418
8
6.6
9
74
22
59
43
0
1
54
1.10
106645363--106645418
12
4.5
12
81
16
69
42
0
1
55
1.10
106646733--106646771
18
2.1
19
90
4
62
41
0
10
48
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106647010--106647144
39
3.4
39
74
6
112
23
20
28
28
1.99
106647267--106647307
19
2.2
19
87
12
59
46
0
24
29
1.53
106651798--106651855
5
10.8
5
80
12
62
43
0
1
55
1.10
106651799--106651856
8
6.7
9
74
21
61
43
0
1
55
1.10
106651801--106651856
12
4.5
12
81
16
69
42
0
1
55
1.10
106653170--106653208
18
2.1
19
90
4
62
41
0
10
48
1.37
106653703--106653743
19
2.2
19
87
12
59
46
0
24
29
1.53
106655361--106655395
17
1.9
19
88
11
56
65
11
2
20
1.37
106658942--106658974
10
3.7
9
84
15
50
66
3
0
30
1.06
106661956--106661980
2
12.5
2
100
0
50
48
0
0
52
1.00
106663940--106663965
10
2.6
10
100
0
52
30
0
0
69
0.89
106673210--106673248
14
2.7
16
81
18
50
0
23
2
74
0.94
106681758--106681891
55
2.4
55
98
0
259
20
35
22
21
1.96
106682911--106683025
40
2.9
39
90
5
169
26
26
15
30
1.96
106686009--106686085
38
2.0
38
84
0
100
41
27
11
19
1.86
106690957--106691105
52
2.8
52
81
1
163
32
26
14
26
1.94
106693857--106693897
3
13.7
3
94
0
73
0
29
0
70
0.87
106699573--106699613
17
2.4
17
87
0
55
46
0
2
51
1.14
106699686--106699781
32
3.0
31
77
7
93
57
8
1
33
1.36
106699698--106699754
16
3.6
16
74
9
53
61
7
0
31
1.23
106707311--106707343
16
2.0
17
88
5
50
42
0
9
48
1.35
106710167--106710193
6
4.5
6
100
0
54
0
66
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106711240--106711265
2
13.0
2
100
0
52
50
0
0
50
1.00
106715301--106715333
2
16.5
2
100
0
66
48
0
0
51
1.00
106719788--106719822
17
2.1
16
89
5
52
48
20
0
31
1.50
106731945--106732000
28
1.9
28
85
7
76
44
5
3
46
1.43
106734354--106734378
13
1.9
13
100
0
50
32
4
0
64
1.12
106739547--106739585
17
2.2
18
86
4
53
30
5
12
51
1.62
106739594--106739659
25
2.6
24
77
17
71
43
1
0
54
1.09
106739992--106740054
32
2.0
32
87
0
90
55
17
1
25
1.51
106739992--106740053
16
3.9
16
71
0
61
56
17
1
24
1.50
106744031--106744076
22
2.1
22
100
0
92
43
21
13
21
1.86
106747970--106748006
2
18.5
2
100
0
74
51
48
0
0
1.00
106751756--106751784
6
4.8
6
100
0
58
48
17
17
17
1.82
106760003--106760032
15
1.9
16
93
6
53
53
6
0
40
1.27
106760365--106760394
8
3.6
8
95
4
51
53
10
3
33
1.51
106771047--106771090
3
14.7
3
100
0
88
34
0
65
0
0.93
106772021--106772077
26
2.1
27
83
3
71
10
24
35
29
1.89
106784848--106784872
13
1.9
13
100
0
50
88
12
0
0
0.53
106787229--106787293
30
2.2
30
80
5
78
33
15
1
49
1.54
106787802--106787833
14
2.3
14
94
0
55
62
0
0
37
0.95
106792279--106792349
35
2.0
35
86
0
97
29
23
9
36
1.87
106796802--106796926
48
2.6
49
85
7
159
19
19
26
35
1.95
106799623--106799666
24
1.9
24
86
9
65
43
18
6
31
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106799684--106799754
35
2.0
35
86
5
99
29
23
11
35
1.90
106805910--106805943
2
17.5
2
93
6
61
50
0
0
50
1.00
106806394--106806540
57
2.6
55
78
10
154
23
8
10
57
1.58
106808374--106808488
44
2.6
44
85
2
149
35
13
22
27
1.92
106808374--106808507
46
3.0
45
82
4
153
35
14
23
26
1.93
106811905--106811951
19
2.5
19
82
6
51
34
0
2
63
1.06
106812797--106812845
19
2.6
19
81
12
57
63
4
0
32
1.13
106812970--106813022
24
2.3
22
78
18
54
58
3
9
28
1.47
106813229--106813258
2
15.0
2
92
0
51
0
46
0
53
1.00
106813308--106813336
2
14.5
2
100
0
58
0
48
0
51
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378