genome.fa.s1.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  143  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40905791--40905933	24	6.0	24	90	4	209	27	22	22	27	1.99
40905984--40906043	20	3.0	20	92	0	102	31	21	11	35	1.90
40906085--40906132	25	1.9	25	86	0	69	25	16	25	33	1.96
40910439--40910502	31	2.1	31	90	0	101	23	25	15	35	1.94
40910693--40910834	47	3.0	48	89	5	207	27	22	22	27	1.99
40910693--40910834	71	2.0	72	88	4	216	27	22	22	27	1.99
40910693--40910835	24	6.0	24	90	4	209	27	22	22	27	1.99
40910886--40910945	20	3.0	20	90	7	95	33	21	11	33	1.90
40910988--40911035	25	1.9	25	86	0	69	25	16	25	33	1.96
40913827--40913866	21	1.9	21	89	0	62	17	35	32	15	1.91
40913828--40913874	21	2.2	21	84	0	58	21	31	29	17	1.96
40915544--40915588	20	2.2	20	88	0	63	35	13	2	48	1.54
40922584--40922760	40	4.4	40	82	9	193	24	26	23	25	2.00
40922579--40922760	79	2.3	80	80	7	201	25	26	22	25	2.00
40923957--40924058	27	3.7	28	76	13	95	40	20	9	29	1.85
40923958--40924016	29	2.0	29	83	6	75	44	16	10	28	1.81
40924054--40924264	27	7.8	27	88	4	284	27	24	9	38	1.86
40924243--40924410	27	6.2	27	81	4	133	39	21	8	30	1.83
40924243--40924464	54	4.1	54	80	4	196	40	19	8	31	1.82
40924000--40924291	81	3.6	81	76	5	212	29	23	9	37	1.87
40924243--40924464	81	2.7	80	75	6	198	40	19	8	31	1.82
40924252--40924472	27	8.1	27	78	6	86	39	18	9	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40924526--40924590	27	2.4	27	84	5	87	35	20	24	20	1.96
40925827--40925883	9	5.9	9	76	15	60	35	7	21	36	1.80
40925826--40925895	20	3.5	20	90	0	113	34	10	21	34	1.87
40925836--40925878	15	2.8	16	83	16	56	34	9	20	34	1.85
40925940--40926133	23	8.2	24	90	3	297	28	22	21	27	1.99
40925941--40926133	47	4.1	47	90	2	307	29	22	21	26	1.99
40926273--40926364	42	2.2	42	86	3	123	27	10	20	41	1.86
40926388--40926451	31	2.1	31	93	0	110	37	15	23	23	1.93
40927870--40927926	21	2.6	22	83	5	71	15	31	35	17	1.92
40928159--40928183	13	1.9	13	100	0	50	32	32	20	16	1.94
40930271--40930478	79	2.6	80	78	6	190	24	30	23	22	1.99
40930371--40930478	40	2.7	40	86	0	135	21	30	25	23	1.99
40938390--40938597	79	2.6	80	78	6	190	24	30	23	22	1.99
40938490--40938597	40	2.7	40	86	0	135	21	30	25	23	1.99
40942908--40942988	37	2.2	37	82	14	96	24	7	24	43	1.80
40945009--40945071	15	4.2	15	83	0	81	15	14	15	53	1.72
40949423--40949626	40	5.1	40	84	4	205	26	21	27	24	1.99
40949423--40949626	80	2.5	80	80	1	230	26	21	27	24	1.99
40957182--40957281	40	2.5	40	88	4	141	25	23	29	23	1.99
40964895--40965098	40	5.1	40	85	4	223	26	21	27	24	1.99
40964895--40965098	80	2.5	80	81	1	248	26	21	27	24	1.99
40967801--40967878	31	2.5	31	91	2	131	26	25	17	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40967902--40967993	42	2.2	42	90	0	139	35	21	13	29	1.91
40968138--40968235	26	3.8	26	91	1	162	24	24	24	26	2.00
40969038--40969121	27	3.1	27	93	3	134	20	26	22	30	1.98
40969160--40969398	27	8.8	27	76	3	174	32	8	18	41	1.80
40969273--40969412	54	2.6	54	86	4	192	31	6	20	41	1.78
40969160--40969397	81	2.9	82	79	2	246	32	8	18	40	1.80
40969161--40969439	27	10.3	27	75	3	173	34	7	18	39	1.79
40969390--40969655	27	9.9	27	88	1	336	41	8	22	27	1.82
40969633--40969750	27	4.4	26	76	8	94	32	9	18	39	1.83
40969390--40969709	81	3.9	79	83	3	309	39	8	22	29	1.84
40969632--40969750	54	2.2	54	82	5	134	31	10	18	39	1.84
40972609--40972650	21	2.0	21	81	9	50	33	14	0	52	1.42
40974812--40975032	40	5.5	40	96	0	406	26	28	23	22	1.99
40974775--40975032	120	2.2	120	91	3	414	26	27	23	22	2.00
40982872--40983168	40	7.5	40	91	2	440	26	28	22	22	1.99
40982872--40983168	119	2.5	118	90	2	443	26	28	22	22	1.99
40988737--40988782	23	2.0	23	100	0	92	43	26	4	26	1.73
40993497--40993530	17	1.9	18	88	5	52	38	5	5	50	1.51
40993550--40993777	127	1.8	123	86	9	327	48	7	3	40	1.49
40996886--40996982	50	1.9	50	95	0	176	34	14	23	27	1.94
41004635--41004668	13	2.6	13	100	0	68	17	32	35	14	1.91
41032706--41032851	43	3.4	43	75	11	147	31	15	21	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41032706--41032871	43	3.9	43	74	13	137	31	15	22	31	1.94
41034875--41035004	46	2.8	48	81	11	171	29	29	20	20	1.98
41034880--41035023	46	3.1	45	75	11	148	29	29	20	20	1.98
41037421--41037453	13	2.6	13	90	4	50	48	12	0	39	1.40
41039157--41039227	26	2.8	26	95	2	126	26	23	25	23	2.00
41039275--41039322	11	4.6	11	80	12	57	33	18	12	35	1.89
41041585--41041624	3	13.3	3	100	0	80	65	0	0	35	0.93
41041678--41041702	12	2.1	12	100	0	50	52	8	0	40	1.31
41043963--41044033	26	2.8	26	93	2	117	25	23	26	23	2.00
41044081--41044128	11	4.6	11	80	12	57	33	18	12	35	1.89
41046398--41046425	3	9.3	3	100	0	56	64	0	0	35	0.94
41055136--41055304	39	4.3	40	88	6	215	24	20	28	25	1.99
41055136--41055304	77	2.2	79	85	6	220	24	20	28	25	1.99
41062244--41062413	39	4.3	40	90	3	231	24	20	29	25	1.99
41062244--41062413	79	2.2	78	86	5	227	24	20	29	25	1.99
41069226--41069309	27	3.2	26	85	8	98	21	25	20	33	1.97
41070934--41070969	18	2.0	18	94	0	63	30	11	5	52	1.59
41073005--41073053	21	2.4	19	77	12	53	42	22	6	28	1.77
41078263--41078427	43	3.9	42	75	12	149	31	23	18	26	1.98
41079763--41080015	129	2.0	129	84	3	339	26	18	26	29	1.98
41079761--41080015	43	5.9	43	78	8	268	26	18	26	29	1.98
41083519--41083660	40	3.5	40	83	1	124	27	23	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41083558--41083686	40	3.2	39	84	6	152	24	22	27	25	2.00
41092874--41093023	78	1.9	81	84	4	207	25	23	28	23	2.00
41092874--41093023	38	3.8	40	86	4	205	25	23	28	23	2.00
41097541--41097758	40	5.4	40	87	3	269	26	23	26	23	2.00
41105656--41105867	40	5.3	40	87	1	264	26	22	25	25	2.00
41105742--41105893	80	1.9	80	80	0	178	26	24	25	23	2.00
41105656--41105882	119	1.9	120	82	3	287	27	22	25	24	2.00
41110669--41110767	28	3.5	28	87	4	119	27	15	27	30	1.96
41117407--41117574	43	3.9	42	72	12	119	28	27	19	24	1.98
41119431--41119490	27	2.3	26	85	2	75	35	20	23	21	1.96
41124617--41124861	125	2.0	125	93	0	418	36	20	8	34	1.84
41125412--41125475	23	2.8	23	97	0	119	48	9	9	32	1.67
41127161--41127190	5	6.0	5	96	0	51	63	0	0	36	0.95
41134987--41135026	19	2.1	19	95	0	71	30	7	30	32	1.85
41136480--41136522	13	3.5	13	78	18	56	39	0	11	48	1.40
41136478--41136522	23	2.0	23	95	0	81	40	0	11	48	1.39
41138917--41138948	2	16.0	2	100	0	64	50	0	0	50	1.00
41141956--41142136	46	3.9	46	81	9	233	20	21	29	27	1.98
41141958--41142128	93	1.8	93	96	0	315	20	22	29	27	1.98
41144202--41144794	292	2.0	292	95	0	1060	35	17	13	34	1.88
41146147--41146218	36	2.0	36	100	0	144	36	13	13	36	1.85
41148284--41148713	48	8.9	48	77	6	379	25	29	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41148284--41148713	96	4.5	96	84	5	546	25	29	18	27	1.98
41148321--41148713	144	2.7	141	81	4	432	25	29	18	27	1.98
41153641--41153793	40	3.8	40	90	0	243	27	29	20	22	1.98
41153629--41153813	80	2.3	80	86	3	264	30	28	17	23	1.97
41153625--41153822	40	5.0	41	82	7	228	28	28	20	22	1.98
41154580--41154607	2	14.0	2	100	0	56	50	0	0	50	1.00
41156965--41157277	156	2.0	156	99	0	617	27	23	17	30	1.97
41161915--41162119	79	2.6	80	87	3	301	27	28	20	22	1.99
41161919--41162119	39	5.1	40	87	4	266	27	29	20	22	1.99
41162870--41162901	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378