genome.fa.s1.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  188  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55218430--55218670	46	5.2	45	77	13	181	29	29	19	21	1.98
55223671--55223760	27	3.3	27	85	3	119	40	17	10	32	1.83
55223671--55223777	54	2.0	54	81	7	128	38	20	10	30	1.86
55223766--55224083	27	11.8	27	85	0	323	28	21	8	41	1.83
55223712--55224002	81	3.6	81	84	0	206	29	22	9	38	1.85
55223766--55224083	54	5.9	54	90	0	440	28	21	8	41	1.83
55223766--55224082	81	3.9	81	89	0	420	28	21	8	41	1.83
55224062--55224147	27	3.2	27	86	6	86	41	24	5	27	1.78
55224076--55224200	54	2.3	54	80	10	139	44	19	9	27	1.81
55224076--55224174	27	3.7	27	87	5	121	45	20	7	27	1.76
55224101--55224219	27	4.4	27	81	5	98	42	17	13	26	1.87
55224103--55224219	54	2.2	53	78	7	121	42	17	12	26	1.86
55224839--55224907	28	2.5	28	92	2	113	43	26	10	20	1.83
55227954--55228034	27	3.0	27	83	8	76	39	16	9	34	1.81
55227963--55228052	27	3.3	28	84	9	107	40	16	10	33	1.82
55228058--55228374	27	11.8	27	84	1	305	28	22	7	41	1.81
55228058--55228374	54	5.9	54	89	0	431	28	22	7	41	1.81
55228058--55228374	81	3.9	81	88	0	404	28	22	7	41	1.81
55228353--55228438	27	3.2	27	86	6	86	41	24	5	27	1.78
55228367--55228493	54	2.4	53	79	11	141	43	19	9	27	1.82
55228367--55228465	27	3.7	27	87	5	121	45	20	7	27	1.76
55228392--55228511	27	4.4	27	83	4	109	40	18	13	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55229130--55229198	28	2.5	28	90	2	104	42	26	11	20	1.86
55233063--55233314	127	2.0	126	87	2	362	35	22	22	20	1.96
55242709--55242912	40	5.1	39	85	4	230	26	26	21	24	1.99
55242999--55243187	64	3.0	64	58	16	142	33	26	11	28	1.91
55242881--55243219	123	2.8	123	95	0	597	33	25	10	30	1.90
55250080--55250323	40	6.1	40	87	2	303	27	26	21	24	1.99
55250410--55250598	64	3.0	64	58	16	142	33	26	11	28	1.91
55250292--55250630	123	2.8	123	95	0	597	33	25	10	30	1.90
55256289--55256327	18	2.4	16	80	19	53	64	5	5	25	1.35
55256289--55256331	17	2.6	16	86	13	61	65	4	4	25	1.32
55261819--55261966	80	1.9	80	81	2	181	22	30	24	22	1.99
55261860--55261966	40	2.7	39	85	8	128	21	29	25	23	1.99
55269956--55270069	37	3.1	39	88	8	184	21	31	21	25	1.98
55272393--55272530	51	2.7	51	82	8	149	28	28	16	26	1.97
55272436--55272673	51	4.7	50	79	5	192	31	26	15	26	1.96
55272537--55272669	50	2.6	50	80	7	142	33	26	12	27	1.93
55278921--55278996	27	2.8	27	79	0	98	22	23	15	38	1.93
55281537--55281658	37	3.3	37	96	0	217	22	32	19	25	1.97
55281754--55281979	49	4.7	49	86	7	291	30	30	7	30	1.85
55284785--55284849	22	3.0	22	75	8	69	30	21	26	21	1.98
55284989--55285105	41	2.9	41	92	0	171	28	28	21	22	1.99
55285348--55285620	27	10.1	27	82	3	237	28	7	20	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55285370--55285620	81	3.1	79	81	5	272	27	7	21	43	1.78
55285617--55285693	27	2.9	27	90	0	109	31	23	12	32	1.92
55288347--55288532	40	4.7	40	84	6	209	26	26	20	26	1.99
55292127--55292296	45	3.7	46	78	14	181	21	21	28	28	1.99
55292131--55292304	46	3.8	45	80	9	199	21	21	28	28	1.98
55297197--55297344	40	3.7	40	91	1	217	23	22	29	25	1.99
55297197--55297364	80	2.1	80	84	3	214	23	22	27	26	1.99
55302956--55303131	46	3.8	46	80	10	214	21	21	28	28	1.98
55302953--55303124	93	1.8	93	94	0	308	21	21	29	27	1.99
55304062--55304113	24	2.2	24	100	0	104	36	11	21	30	1.89
55305066--55305127	25	2.4	25	94	2	106	48	6	8	37	1.59
55308327--55308352	13	2.0	13	100	0	52	53	0	0	46	1.00
55309087--55309207	46	2.9	43	74	20	130	39	9	13	37	1.78
55309427--55309560	58	2.3	58	83	6	182	43	0	3	52	1.24
55309728--55309781	16	3.4	16	80	10	65	35	25	1	37	1.67
55312169--55312251	39	2.2	39	78	6	89	56	3	1	38	1.24
55312922--55312962	19	2.1	19	86	9	55	58	2	7	31	1.38
55314024--55314134	19	5.9	19	75	1	80	18	26	27	27	1.98
55315626--55315674	24	2.0	24	88	0	71	38	18	24	18	1.93
55316021--55316101	42	1.9	42	82	5	101	23	32	25	18	1.97
55320944--55321346	46	8.7	46	87	2	531	43	14	22	19	1.87
55320944--55321346	93	4.3	93	88	2	526	43	14	22	19	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55320939--55321346	139	2.9	139	90	1	613	43	14	22	19	1.87
55325515--55325585	35	2.0	35	100	0	142	25	25	8	40	1.83
55327620--55327731	24	4.6	24	77	2	116	25	16	32	25	1.97
55327644--55327754	49	2.3	49	82	6	127	27	16	30	25	1.96
55327619--55327755	73	1.9	73	81	6	170	26	16	32	25	1.96
55335267--55335401	49	2.8	47	84	6	146	26	17	30	25	1.97
55335266--55335402	24	5.6	24	75	6	98	27	16	30	25	1.97
55337431--55337521	46	2.0	46	97	0	173	24	16	18	40	1.90
55338502--55338580	20	4.0	20	80	4	81	32	10	12	44	1.76
55338493--55338580	40	2.2	40	82	8	99	30	11	13	44	1.79
55340641--55340742	29	3.5	28	76	7	89	27	34	17	20	1.95
55344664--55344876	27	7.9	27	86	0	264	31	23	7	37	1.82
55344640--55344847	81	2.6	81	88	0	299	30	24	7	37	1.82
55344826--55345078	27	9.3	27	75	8	138	40	19	8	31	1.82
55344651--55345049	54	7.4	54	79	5	207	37	21	7	33	1.81
55345096--55345173	27	2.9	27	77	11	88	37	21	20	20	1.95
55345982--55346051	25	2.8	25	88	0	104	27	24	22	25	2.00
55345981--55346076	25	3.9	24	78	9	86	28	22	22	26	1.99
55348771--55348861	40	2.3	40	84	0	110	31	24	21	21	1.98
55349900--55349936	18	2.1	18	100	0	74	37	13	27	21	1.91
55356691--55356723	2	16.5	2	93	0	57	45	0	0	54	0.99
55370148--55370333	79	2.3	79	78	12	193	26	23	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55372040--55372127	45	2.0	45	93	0	149	20	22	18	38	1.93
55378018--55378193	47	3.8	46	80	8	178	31	20	25	22	1.98
55379884--55379914	9	3.4	9	90	0	53	12	64	0	22	1.27
55381747--55381847	28	3.5	28	86	6	114	28	13	27	29	1.95
55381776--55381847	29	2.5	28	91	6	110	29	13	27	29	1.95
55389601--55389672	28	2.5	29	86	4	92	27	13	27	30	1.94
55393335--55393368	2	17.0	2	93	0	59	52	0	0	47	1.00
55399118--55399375	56	4.6	56	85	3	340	27	15	22	34	1.94
55399818--55399845	2	14.0	2	100	0	56	50	0	0	50	1.00
55401459--55401501	23	1.9	22	90	4	68	34	0	9	55	1.32
55405777--55406025	56	4.5	55	81	9	283	26	14	23	36	1.93
55408100--55408143	23	2.0	22	86	4	61	36	0	9	54	1.32
55410408--55410676	46	5.7	47	76	9	221	30	19	27	23	1.98
55410413--55410676	140	1.9	141	81	7	322	30	19	26	23	1.98
55415592--55415744	40	3.8	40	79	5	148	25	28	23	22	2.00
55423652--55423798	39	3.8	38	85	8	165	24	27	23	24	2.00
55423652--55423761	39	2.8	39	91	5	170	23	27	22	26	2.00
55426653--55426753	28	3.5	28	86	6	114	29	26	13	29	1.94
55429199--55429246	24	2.0	24	91	0	78	35	16	20	27	1.94
55429282--55429429	51	2.9	51	91	6	246	32	14	25	27	1.94
55434260--55434386	43	2.9	42	79	8	114	22	14	26	35	1.94
55438774--55438916	51	2.8	51	93	4	245	31	25	11	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55438952--55439020	22	3.0	22	89	8	111	23	21	14	40	1.90
55438952--55439021	24	3.0	24	93	4	117	22	21	15	40	1.91
55442370--55442521	40	3.8	40	85	0	178	27	23	25	23	2.00
55449611--55449648	19	2.0	20	85	15	53	36	0	23	39	1.55
55453202--55453285	40	2.1	39	84	2	105	26	16	28	28	1.97
55463719--55463850	20	6.6	20	98	0	237	16	37	34	11	1.85
55472772--55472872	28	3.5	29	86	6	125	29	27	13	28	1.95
55474178--55474216	21	2.0	20	85	14	55	7	15	0	76	0.99
55479732--55479912	39	4.6	39	94	0	290	26	20	29	22	1.99
55479732--55479952	117	1.9	119	90	1	356	24	22	29	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378