genome.fa.s1.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  177  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51553515--51553651	57	2.4	58	84	10	176	34	4	2	59	1.30
51553519--51553612	19	4.9	19	75	11	75	36	3	2	58	1.26
51557941--51558158	49	4.6	49	70	11	141	25	27	19	27	1.99
51558130--51558252	46	2.7	44	86	7	158	25	26	17	30	1.98
51563144--51563181	20	1.9	20	88	0	58	36	10	0	52	1.36
51568131--51568214	26	3.3	26	69	21	86	42	33	3	20	1.69
51568131--51568230	51	2.0	51	100	0	200	44	32	4	20	1.70
51574530--51574596	30	2.2	30	91	0	107	44	2	11	40	1.56
51574530--51574605	30	2.5	29	83	8	98	43	3	13	39	1.62
51575490--51575530	16	2.7	16	92	7	68	34	0	12	53	1.38
51578801--51578959	46	3.4	45	69	16	128	32	28	16	22	1.96
51578794--51578963	93	1.8	93	88	2	261	32	26	18	22	1.97
51579362--51579419	30	1.9	30	82	6	73	29	27	3	39	1.73
51587499--51587665	39	4.3	39	91	0	253	24	30	20	23	1.99
51594778--51594977	39	5.1	39	88	0	229	25	32	20	22	1.98
51594814--51594980	39	4.3	39	92	0	262	24	31	19	23	1.98
51596628--51596803	46	3.8	46	73	12	162	31	27	18	21	1.97
51596635--51596805	93	1.8	93	88	0	261	30	27	19	22	1.98
51599431--51599658	40	5.7	40	94	3	397	24	22	27	25	2.00
51599431--51599691	119	2.2	119	89	4	393	25	22	27	24	2.00
51607497--51607719	40	5.7	40	89	4	337	25	22	26	25	2.00
51607497--51607719	79	2.8	79	90	3	342	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51607497--51607719	119	1.9	118	87	4	333	25	22	26	25	2.00
51617053--51617093	20	2.0	20	95	0	73	19	26	36	17	1.94
51617065--51617106	20	2.1	20	82	8	50	21	23	42	11	1.86
51620496--51620543	20	2.4	20	85	0	69	22	31	18	27	1.97
51621581--51621762	40	4.6	40	76	1	150	31	13	20	34	1.91
51626483--51626510	13	2.2	13	100	0	56	35	14	7	42	1.73
51631596--51631743	40	3.7	40	79	3	145	20	28	24	26	1.99
51631580--51631743	80	2.0	80	84	2	213	23	28	23	25	1.99
51636358--51636456	28	3.5	28	81	9	112	29	25	16	29	1.96
51643568--51643666	28	3.5	28	81	9	112	29	25	16	29	1.96
51648495--51648586	44	2.1	44	100	0	184	31	18	6	43	1.75
51649373--51649518	40	3.7	40	76	3	132	24	28	20	26	1.99
51649358--51649518	80	2.0	80	84	2	207	26	28	19	25	1.99
51652144--51652418	3	90.3	3	68	13	89	57	3	8	30	1.46
51653116--51653140	12	2.1	12	100	0	50	84	0	16	0	0.63
51655942--51656184	26	9.8	26	82	8	303	27	23	22	26	1.99
51656041--51656131	21	4.0	21	80	14	110	28	24	21	25	1.99
51655942--51656180	121	2.0	120	86	6	338	28	24	22	25	2.00
51655965--51656183	73	3.0	73	81	12	272	28	23	21	26	1.99
51656987--51657079	27	3.4	27	83	2	107	21	26	19	32	1.97
51657135--51657414	27	10.3	27	79	8	165	34	7	19	38	1.80
51657131--51657333	81	2.5	83	74	6	189	31	8	19	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51657270--51657454	81	2.3	81	78	0	217	36	7	20	35	1.80
51657311--51657441	27	4.9	27	91	0	190	41	6	20	31	1.77
51658660--51658844	40	4.6	40	75	0	136	30	14	23	31	1.94
51661458--51661500	18	2.3	19	92	8	79	23	9	4	62	1.44
51662817--51662845	14	2.1	14	100	0	58	24	0	27	48	1.51
51664590--51664732	40	3.5	40	80	8	164	24	26	23	25	2.00
51672768--51672921	39	3.9	40	88	0	204	22	21	31	24	1.98
51672768--51672921	79	1.9	79	86	2	220	22	21	31	24	1.98
51675741--51675827	37	2.3	36	94	5	147	26	33	19	20	1.97
51675891--51676499	49	12.4	49	92	0	975	28	29	10	31	1.89
51676132--51676212	27	3.2	27	61	16	64	29	28	7	34	1.84
51685219--51685372	39	3.9	39	86	0	191	22	21	31	24	1.98
51685219--51685372	79	1.9	79	85	2	211	22	21	31	24	1.98
51688228--51688391	71	2.3	71	100	0	328	18	28	17	35	1.94
51688228--51688425	71	2.8	70	91	3	258	20	28	17	33	1.95
51695798--51695961	71	2.3	71	100	0	328	18	28	17	35	1.94
51695798--51695995	71	2.8	70	91	3	258	20	28	17	33	1.95
51698465--51698565	28	3.5	30	82	6	118	29	14	26	28	1.95
51698494--51698569	29	2.7	28	76	13	75	30	14	26	28	1.95
51706326--51706426	28	3.5	30	82	6	118	29	14	26	28	1.95
51706355--51706430	29	2.7	28	76	13	75	30	14	26	28	1.95
51729272--51729455	78	2.3	80	81	7	205	23	27	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51729253--51729455	40	5.1	39	75	7	140	24	28	23	24	2.00
51733387--51733529	39	3.6	39	88	0	187	23	31	22	23	1.98
51745023--51745164	40	3.6	40	87	1	182	23	31	21	23	1.98
51745053--51745165	39	2.9	39	90	2	174	23	32	20	23	1.98
51747645--51747762	59	2.0	59	98	0	227	27	10	24	38	1.87
51750419--51750497	24	3.3	24	78	15	83	35	18	25	20	1.95
51758418--51758457	20	2.0	20	100	0	80	20	30	5	45	1.72
51760341--51760515	46	3.8	46	74	15	153	30	29	18	21	1.97
51760348--51760520	93	1.9	93	87	0	256	30	30	18	21	1.97
51763817--51763902	24	3.5	24	81	9	86	33	19	24	22	1.97
51764487--51764519	9	3.7	9	100	0	66	45	21	0	33	1.52
51767964--51768004	21	2.0	21	85	0	55	29	4	21	43	1.73
51768695--51768733	20	2.0	20	89	0	60	12	25	38	23	1.90
51775466--51775552	31	2.8	31	91	0	138	27	17	28	26	1.97
51775581--51775767	42	4.2	43	81	10	161	31	14	24	29	1.95
51775628--51775785	42	3.7	42	83	9	160	30	14	25	29	1.95
51777081--51777120	20	2.0	20	100	0	80	20	30	5	45	1.72
51779489--51779674	40	4.7	40	84	5	218	26	20	26	26	1.99
51787593--51787775	40	4.6	40	85	5	203	27	20	25	26	1.99
51792025--51792178	38	4.0	38	91	4	247	25	20	31	22	1.98
51792044--51792215	38	4.5	39	85	7	158	23	22	32	21	1.98
51800129--51800288	39	4.2	39	88	8	247	23	20	32	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51800174--51800246	37	2.2	30	70	29	76	26	20	31	21	1.98
51800140--51800288	76	2.0	76	93	2	255	23	20	32	23	1.98
51800146--51800324	39	4.6	40	86	4	154	22	22	32	22	1.98
51807624--51807734	39	2.8	41	85	9	149	22	26	28	22	1.99
51807621--51807749	40	3.3	39	83	7	163	22	24	27	24	2.00
51815735--51815864	40	3.2	40	84	4	174	22	24	29	23	1.99
51820386--51820493	26	4.2	26	97	0	207	36	26	6	30	1.82
51822429--51822469	20	2.0	20	95	0	73	9	26	41	21	1.84
51830929--51831029	28	3.5	28	86	6	114	28	13	27	29	1.95
51830958--51831029	29	2.5	28	91	6	110	29	13	27	29	1.95
51839017--51839059	16	2.7	16	92	0	77	41	16	23	18	1.89
51845024--51845116	29	3.2	29	79	0	105	36	15	27	20	1.92
51849152--51849336	40	4.7	40	78	8	173	25	21	25	27	1.99
51857218--51857402	40	4.7	40	84	7	227	23	22	28	25	1.99
51857218--51857400	79	2.3	81	85	7	241	24	22	27	25	2.00
51857219--51857435	79	2.7	78	79	12	237	25	21	27	25	1.99
51865212--51865394	79	2.3	81	84	7	232	24	21	27	26	1.99
51865213--51865396	40	4.6	40	83	9	216	23	21	28	26	1.99
51865246--51865429	79	2.3	77	81	10	210	26	21	26	25	1.99
51866635--51866781	74	2.0	74	97	0	276	34	12	23	30	1.91
51867364--51867441	29	2.8	28	73	21	72	23	14	34	28	1.93
51881719--51881753	17	2.1	17	88	0	52	20	5	8	65	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51884233--51884341	43	2.6	43	79	4	123	28	23	16	31	1.96
51887150--51887481	27	12.3	27	83	1	333	39	20	8	31	1.82
51887502--51887668	27	6.3	27	86	2	212	32	20	20	25	1.97
51887930--51887975	2	23.0	2	100	0	92	50	0	0	50	1.00
51888227--51888306	31	2.6	31	85	0	106	21	16	12	50	1.78
51888227--51888363	6	22.3	6	71	15	93	19	16	13	49	1.79
51888255--51888361	43	2.5	43	92	0	178	17	17	14	49	1.80
51898536--51898737	38	5.3	38	83	4	228	31	25	20	22	1.98
51898541--51898737	78	2.6	76	81	3	241	31	24	20	23	1.98
51902462--51902587	42	2.9	43	77	8	123	31	24	18	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378