Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  349  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104997270--104997316
23
2.0
23
95
0
85
25
23
21
29
1.99
105000145--105000187
20
2.2
20
86
0
59
27
9
11
51
1.69
105000863--105000915
24
2.2
24
89
0
79
43
28
9
18
1.81
105007488--105007519
16
2.0
16
93
0
55
40
18
15
25
1.90
105019867--105019906
19
2.1
19
100
0
80
32
10
12
45
1.75
105022167--105022212
23
2.0
23
88
12
69
47
10
4
36
1.58
105022173--105022224
23
2.2
24
83
10
63
44
15
5
34
1.70
105032167--105032208
21
2.0
21
81
9
50
57
0
11
30
1.35
105034019--105034107
31
3.0
29
81
5
88
50
10
5
33
1.59
105035143--105035193
26
2.0
26
88
0
75
60
21
9
7
1.53
105041744--105041782
18
2.2
17
90
4
60
46
10
20
23
1.81
105045076--105045114
11
3.3
11
80
19
51
71
20
0
7
1.10
105045403--105045446
19
2.3
19
88
4
61
77
9
13
0
0.99
105045416--105045470
26
2.1
25
83
6
65
78
10
10
0
0.98
105046277--105046306
15
2.0
15
93
0
51
6
30
23
40
1.80
105046436--105046469
17
1.9
18
94
5
61
8
5
2
82
0.93
105046703--105046742
20
1.9
22
85
10
57
40
10
0
50
1.36
105050472--105050510
21
1.9
20
84
5
51
43
5
20
30
1.73
105050733--105050773
20
2.0
20
90
9
66
29
2
4
63
1.28
105051619--105051680
18
3.3
18
75
24
58
66
3
1
29
1.17
105056048--105056095
25
1.9
25
91
0
78
39
12
12
35
1.81
105056583--105056679
16
6.3
15
68
13
54
36
4
5
54
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105057581--105057614
16
2.1
16
94
0
59
47
0
2
50
1.16
105060559--105060593
2
17.5
2
100
0
70
51
0
0
48
1.00
105061075--105061108
7
4.9
7
88
0
50
32
2
8
55
1.45
105063284--105063344
22
2.8
21
85
2
77
13
4
13
68
1.35
105068303--105068376
38
1.9
38
97
0
139
28
13
20
37
1.90
105068301--105068440
34
4.0
34
81
9
138
27
15
20
36
1.93
105068803--105068840
18
2.1
18
85
9
51
39
0
18
42
1.50
105069144--105069179
2
18.0
2
100
0
72
50
0
0
50
1.00
105075990--105079527
156
22.8
156
85
3
4448
31
15
14
38
1.88
105075990--105079527
469
7.6
468
87
3
4865
31
15
14
38
1.88
105078296--105078548
137
1.9
136
93
2
436
35
14
15
33
1.88
105081770--105081994
125
1.8
125
89
0
351
37
10
8
42
1.71
105084212--105084285
30
2.5
29
82
8
87
29
0
4
66
1.10
105086701--105086746
19
2.3
20
81
3
58
39
2
4
54
1.32
105086727--105086755
14
2.1
14
100
0
58
48
0
0
51
1.00
105087011--105087066
18
3.1
17
73
14
51
32
3
3
60
1.31
105087015--105087068
27
2.0
27
82
10
65
31
3
3
61
1.31
105098445--105098540
25
3.8
25
72
8
79
31
17
27
23
1.97
105111113--105111163
16
3.2
16
88
0
75
25
21
5
47
1.73
105115875--105115947
35
2.0
37
82
10
89
61
2
6
28
1.35
105116994--105117029
16
2.2
17
85
14
58
50
0
50
0
1.00
105118738--105119000
130
2.0
130
96
0
490
30
20
16
32
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105119093--105119128
14
2.6
14
90
0
54
52
2
25
19
1.59
105130428--105130500
35
2.0
37
82
10
89
61
2
6
28
1.35
105131540--105131578
16
2.3
16
86
8
51
46
0
53
0
1.00
105131548--105131578
16
2.0
15
93
6
53
41
0
58
0
0.98
105132721--105132762
16
2.7
15
82
14
50
64
2
7
26
1.32
105145509--105145537
11
2.7
11
94
5
51
55
6
0
37
1.27
105145588--105145654
21
3.2
20
80
15
75
61
0
7
31
1.24
105145669--105145734
22
3.2
19
74
18
51
57
4
3
34
1.34
105145815--105145931
23
4.8
24
72
19
84
54
5
6
32
1.51
105146058--105146126
26
2.7
26
86
8
90
57
2
4
34
1.33
105146154--105146197
15
2.8
16
79
10
54
59
4
0
36
1.18
105151482--105151535
26
2.1
26
100
0
108
51
3
7
37
1.48
105151935--105151978
15
2.8
16
82
6
54
36
4
6
52
1.49
105151989--105152030
20
2.1
20
86
0
57
59
0
0
40
0.97
105152636--105152691
21
2.7
22
81
10
64
42
1
0
55
1.10
105152636--105152691
20
2.7
21
83
10
62
42
1
0
55
1.10
105152969--105152995
2
13.5
2
100
0
54
51
0
0
48
1.00
105164314--105164356
21
2.0
22
86
4
61
16
16
2
65
1.38
105165785--105165815
15
2.1
15
100
0
62
32
9
19
38
1.84
105166559--105166624
27
2.4
27
85
9
98
16
28
37
16
1.91
105166650--105166718
3
22.7
3
73
14
52
0
34
5
59
1.21
105166656--105166715
30
2.0
29
83
9
75
0
35
6
58
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105168669--105168805
29
4.5
29
88
10
202
24
22
13
39
1.90
105168669--105168815
64
2.4
64
87
7
207
24
21
13
40
1.90
105171525--105171594
27
2.6
26
80
8
79
58
2
10
28
1.45
105171535--105171594
27
2.2
27
87
0
93
60
3
8
28
1.42
105177327--105177368
21
2.0
22
90
4
68
57
16
0
26
1.40
105177767--105177811
19
2.3
19
92
3
72
26
11
13
48
1.75
105177775--105177812
19
2.0
19
100
0
76
26
10
15
47
1.78
105177947--105177971
2
12.5
2
100
0
50
48
0
0
52
1.00
105178133--105178177
15
2.9
15
83
3
54
22
0
0
77
0.76
105178144--105178184
19
2.1
20
86
13
59
26
0
0
73
0.84
105178237--105178272
16
2.2
16
90
0
54
63
19
0
16
1.30
105180061--105180193
43
3.1
43
82
7
137
30
13
22
33
1.93
105183449--105183540
32
2.9
32
93
0
148
38
22
10
28
1.88
105186176--105186200
12
2.1
12
100
0
50
84
0
0
16
0.63
105189179--105189313
46
2.9
46
83
0
162
22
22
12
42
1.87
105191125--105191180
11
5.2
11
78
4
60
64
1
0
33
1.04
105191125--105191208
43
2.0
41
83
4
105
60
1
0
38
1.04
105193577--105193602
13
2.0
13
100
0
52
84
0
0
15
0.62
105200463--105200510
25
1.9
25
87
8
71
41
18
22
16
1.90
105206896--105207154
129
2.0
128
94
0
455
32
12
12
42
1.80
105207402--105207434
7
4.9
7
96
3
59
90
0
9
0
0.44
105208805--105208840
2
18.0
2
100
0
72
0
50
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105214047--105214101
24
2.3
24
87
9
85
27
5
12
54
1.60
105214236--105214301
15
4.3
15
77
7
60
30
15
3
51
1.58
105220992--105221030
16
2.5
16
83
4
53
41
0
0
58
0.98
105231345--105231385
2
20.5
2
100
0
82
51
0
0
48
1.00
105237024--105237084
32
1.9
32
86
6
88
21
22
36
19
1.95
105244230--105244285
28
2.0
29
85
3
78
33
23
16
26
1.95
105244245--105244415
29
6.0
28
72
10
105
33
15
16
33
1.91
105249367--105249483
3
38.0
3
70
17
55
34
1
0
63
1.11
105249357--105249477
19
6.1
18
69
19
71
33
2
0
63
1.13
105249424--105249688
14
18.0
15
68
22
111
35
4
1
58
1.26
105249388--105249485
18
5.2
18
73
18
74
31
2
1
65
1.11
105249516--105249683
17
9.5
17
67
23
64
34
4
1
60
1.24
105249418--105249666
30
8.0
30
66
20
102
34
4
1
59
1.24
105249504--105249668
58
2.7
59
70
18
135
33
4
1
60
1.24
105249612--105249681
16
4.2
16
74
15
54
32
2
1
62
1.18
105249938--105249984
18
2.5
19
75
3
51
31
2
0
65
1.04
105252836--105252862
13
2.1
13
100
0
54
48
14
7
29
1.71
105254601--105254630
12
2.5
12
100
0
60
76
0
10
13
1.01
105267934--105268482
46
12.0
46
91
0
733
39
14
24
21
1.91
105268768--105268800
17
2.0
17
88
5
50
45
3
15
36
1.61
105280316--105280371
16
3.6
16
83
7
71
28
7
7
57
1.52
105281759--105281792
16
2.1
16
94
0
59
32
17
20
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105282124--105282176
23
2.3
23
100
0
106
50
7
11
30
1.65
105288178--105288221
17
2.6
18
78
10
56
47
2
0
50
1.13
105292147--105292281
26
5.2
26
96
1
227
33
5
24
36
1.80
105297951--105298082
26
5.2
26
92
5
200
32
5
25
37
1.78
105301260--105301290
12
2.6
12
100
0
62
9
25
51
12
1.70
105306158--105306267
26
4.2
26
92
0
175
33
5
23
37
1.78
105308908--105309218
129
2.4
130
79
4
357
28
17
16
37
1.91
105309819--105309963
19
7.9
19
87
9
221
38
9
13
37
1.78
105309840--105309895
18
3.5
15
81
18
60
37
10
16
35
1.83
105309819--105309963
54
2.7
54
93
1
245
38
9
13
37
1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378