Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  111  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30859566--30859621
26
2.2
26
96
0
103
37
26
5
30
1.79
30861778--30861851
29
2.6
29
95
0
139
27
14
31
27
1.95
30861835--30861910
29
2.6
29
77
4
82
22
21
35
21
1.96
30869653--30869726
29
2.6
29
95
0
139
27
14
31
27
1.95
30869710--30869784
28
2.6
28
78
2
87
22
20
36
21
1.96
30869653--30869784
58
2.3
57
80
3
131
25
17
33
24
1.96
30877644--30877699
26
2.2
26
96
0
103
35
25
7
32
1.83
30882259--30882283
12
2.1
12
100
0
50
32
0
16
52
1.44
30882538--30882606
28
2.5
28
88
6
97
30
27
14
27
1.95
30885976--30886068
40
2.4
40
83
3
118
38
35
11
13
1.82
30892316--30892363
25
1.9
25
83
8
62
33
22
12
31
1.91
30894436--30894560
46
2.7
46
94
0
214
29
28
20
21
1.98
30896365--30896408
13
3.4
13
100
0
88
0
40
34
25
1.56
30899353--30899574
40
5.6
40
88
1
322
22
22
26
27
1.99
30901273--30901306
11
3.1
11
86
0
50
64
11
8
14
1.49
30906219--30906255
19
2.0
19
89
5
58
24
18
40
16
1.90
30906324--30906440
28
4.1
28
78
14
107
29
12
30
26
1.93
30906344--30906440
28
3.4
28
83
8
115
29
14
31
23
1.94
30908707--30908740
7
4.9
7
100
0
68
29
14
29
26
1.95
30908900--30908944
20
2.2
20
92
0
72
46
8
0
44
1.34
30909168--30909201
11
3.1
11
86
0
50
64
11
8
14
1.49
30916065--30916334
43
6.3
43
82
6
316
30
27
17
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30920502--30920546
19
2.3
19
84
3
63
17
2
4
75
1.07
30920888--30920931
7
6.3
7
86
0
52
38
38
2
20
1.65
30920993--30921031
14
2.8
14
88
0
60
46
30
0
23
1.53
30921196--30921249
15
3.7
15
76
16
51
40
35
1
22
1.65
30921207--30921248
22
2.0
21
85
4
57
40
38
0
21
1.53
30921447--30921511
23
2.8
24
77
15
57
24
0
26
49
1.51
30921419--30921521
54
1.9
53
84
2
134
23
0
25
50
1.55
30921553--30921793
41
5.9
40
79
6
207
21
23
20
34
1.97
30921553--30921793
82
3.0
81
76
8
229
21
23
20
34
1.97
30921578--30921802
122
1.8
123
83
4
303
21
22
20
35
1.96
30921826--30921851
12
2.2
12
100
0
52
46
30
15
7
1.74
30921959--30922515
301
1.9
301
94
0
990
31
13
16
38
1.88
30925048--30925211
71
2.3
71
100
0
328
18
28
17
35
1.94
30925048--30925245
71
2.8
70
91
3
258
20
28
17
33
1.95
30932624--30932787
71
2.3
71
100
0
328
18
28
17
35
1.94
30932624--30932821
71
2.8
70
91
3
258
20
28
17
33
1.95
30935098--30935281
78
2.3
81
86
6
252
24
22
27
26
2.00
30935099--30935281
40
4.6
39
85
8
228
24
22
27
25
2.00
30943258--30943441
78
2.3
81
86
6
252
24
22
27
26
2.00
30943259--30943441
40
4.6
39
85
8
228
24
22
27
25
2.00
30945394--30945452
25
2.4
25
81
18
70
37
1
3
57
1.25
30947218--30947334
40
2.9
40
78
5
112
29
17
21
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30947385--30947494
54
2.0
54
98
0
211
27
21
23
27
1.99
30947592--30947747
41
3.8
41
80
5
181
26
17
24
30
1.97
30948223--30948273
14
3.6
14
71
12
50
45
25
3
25
1.71
30948507--30948544
16
2.5
15
87
8
51
23
0
31
44
1.54
30948775--30948844
7
9.7
7
75
6
59
22
2
35
38
1.69
30948762--30948841
22
3.7
21
76
5
70
25
2
36
36
1.69
30948776--30948844
29
2.4
28
79
11
77
23
2
36
37
1.70
30948734--30948935
80
2.5
80
80
7
230
24
2
36
36
1.69
30949118--30949160
22
2.0
22
85
0
59
53
0
4
41
1.21
30952205--30952506
64
4.7
64
97
0
541
38
10
3
47
1.57
30952557--30952598
19
2.1
21
86
8
61
50
2
2
45
1.27
30953770--30953836
23
2.8
24
82
13
93
28
19
5
46
1.73
30954013--30954068
15
3.8
15
80
20
73
46
0
0
53
1.00
30954173--30954398
9
24.6
9
76
8
143
47
12
0
38
1.48
30954173--30954398
18
12.3
18
75
9
161
47
12
0
38
1.48
30954201--30954411
114
1.9
114
86
4
309
47
12
0
38
1.47
30960283--30960361
31
2.5
32
77
4
79
16
3
17
62
1.48
30960436--30960556
43
2.8
42
94
2
206
21
33
19
24
1.97
30962064--30962108
22
2.0
22
83
8
56
40
4
0
55
1.20
30964116--30964223
57
1.9
57
83
5
139
26
33
13
25
1.94
30964110--30964221
28
4.0
28
83
2
118
27
32
14
25
1.95
30972692--30972875
89
2.1
89
97
1
352
29
6
20
44
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30973241--30973274
7
4.9
7
88
0
50
32
0
35
32
1.58
30974256--30974294
20
2.0
20
100
0
78
58
0
25
15
1.37
30976135--30976288
49
3.2
47
77
9
148
25
26
18
29
1.98
30976163--30976337
49
3.6
48
75
10
158
25
28
19
27
1.99
30976165--30976391
98
2.3
98
79
4
226
25
27
18
28
1.98
30978226--30978265
21
1.9
21
89
0
62
45
12
5
37
1.64
30978396--30978536
40
3.5
40
85
0
174
18
21
6
53
1.67
30978506--30978586
25
3.2
25
89
3
119
16
22
2
59
1.49
30979979--30980017
16
2.4
17
83
12
55
46
15
2
35
1.60
30990242--30990364
55
2.2
56
84
2
151
26
26
30
16
1.96
30995076--30995133
23
2.5
23
97
0
107
46
43
1
8
1.44
30995505--30995551
15
3.1
15
75
0
58
48
10
2
38
1.50
30995898--30995927
2
15.0
2
100
0
60
50
0
0
50
1.00
30996611--30996639
13
2.1
14
93
6
51
44
3
0
51
1.18
31003900--31004030
41
3.2
41
80
6
140
20
23
6
49
1.71
31006532--31006578
21
2.2
21
88
7
69
27
4
10
57
1.51
31009488--31009567
29
2.8
28
87
7
117
22
15
35
27
1.94
31014498--31014648
40
3.8
40
82
6
164
28
21
25
23
1.99
31019605--31019826
40
5.6
40
83
9
267
24
22
26
26
2.00
31021844--31021994
40
3.8
40
78
6
155
27
23
27
21
1.99
31021846--31021994
80
1.9
79
84
6
203
26
24
27
21
1.99
31021844--31022010
80
2.1
79
81
7
196
26
23
26
22
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31029806--31029956
40
3.8
40
77
11
141
26
24
27
21
2.00
31029807--31029956
80
1.9
80
84
5
205
26
24
27
21
1.99
31029805--31029972
40
4.2
40
74
7
139
26
23
26
22
2.00
31029805--31029972
80
2.1
80
81
6
198
26
23
26
22
2.00
31041271--31041383
37
3.1
37
76
13
99
40
2
4
52
1.36
31041408--31041464
21
2.7
21
86
2
69
47
1
1
49
1.22
31046039--31046077
19
2.1
19
100
0
78
15
5
12
66
1.41
31046044--31046086
19
2.3
19
87
0
59
18
9
9
62
1.51
31046276--31046318
21
2.0
21
86
0
59
13
0
9
76
1.01
31067296--31067563
131
2.0
131
97
0
509
31
24
10
34
1.88
31073095--31073123
6
4.8
6
100
0
58
34
0
31
34
1.58
31073474--31073512
20
1.9
21
84
5
53
43
2
12
41
1.56
31073795--31073890
4
24.0
4
97
0
156
0
45
4
50
1.21
31073910--31074070
79
2.0
79
92
0
268
37
14
11
35
1.83
31076245--31076308
28
2.3
28
88
0
101
37
12
21
28
1.90
31092771--31092947
92
1.9
92
91
2
293
38
13
15
32
1.86
31112410--31112442
2
17.0
2
93
6
59
48
0
0
51
1.00
31112462--31112534
26
2.9
25
75
13
69
71
4
23
1
1.11
31117348--31117388
19
2.2
19
100
0
82
46
14
12
26
1.80
31122034--31122124
23
3.9
24
82
4
96
36
17
21
24
1.95
31125140--31125215
35
2.2
35
82
0
89
22
22
23
31
1.98
31136325--31136358
17
1.9
18
88
5
52
47
2
0
50
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31136637--31136676
16
2.4
17
91
8
64
37
0
0
62
0.95
31137055--31137092
7
5.6
7
93
6
69
86
0
13
0
0.56
31146903--31146955
26
2.0
26
82
14
63
56
1
0
41
1.10
31147846--31147888
2
21.5
2
100
0
86
51
0
0
48
1.00
31153459--31153690
49
4.7
49
84
2
320
25
18
27
29
1.98
31162213--31162381
83
2.0
83
87
2
241
26
27
18
28
1.98
31174154--31174239
45
1.9
45
95
0
154
38
26
12
22
1.90
31174170--31174239
21
3.2
21
68
18
61
37
25
14
22
1.92
31175252--31175284
8
4.0
8
92
7
57
12
12
0
75
1.04
31175252--31175284
17
2.0
16
94
5
57
12
12
0
75
1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378