Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  141  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40216488--40216702
46
4.6
46
76
9
186
23
26
19
30
1.98
40216488--40216660
94
1.8
94
83
2
231
22
28
19
30
1.98
40221288--40221462
46
3.8
47
75
13
173
31
28
18
21
1.97
40241030--40241061
5
6.6
5
92
7
57
81
0
0
18
0.70
40241031--40241061
9
3.3
9
95
4
53
80
0
0
19
0.71
40245898--40245983
31
2.8
31
94
1
156
24
26
17
31
1.97
40246201--40246271
26
2.8
25
87
4
97
28
21
23
26
1.99
40246402--40246449
25
1.9
25
91
0
78
29
14
22
33
1.94
40247572--40247604
14
2.2
16
89
10
52
75
0
21
3
0.93
40253897--40253982
31
2.8
31
91
1
147
24
25
17
32
1.97
40254200--40254270
26
2.8
25
89
4
106
28
22
23
25
2.00
40254401--40254448
25
1.9
25
86
0
69
27
14
25
33
1.94
40255565--40255589
13
1.9
13
100
0
50
76
0
24
0
0.80
40256725--40256943
46
4.7
46
78
9
180
22
28
20
28
1.98
40256722--40256943
94
2.4
92
80
8
238
22
29
20
27
1.98
40262019--40262059
22
1.9
21
85
14
57
21
26
41
9
1.84
40264263--40264437
46
3.8
49
80
13
183
28
28
21
22
1.99
40264268--40264437
92
1.8
92
93
1
295
28
28
21
21
1.99
40264856--40264915
30
2.0
30
90
0
93
30
25
8
36
1.85
40271846--40272016
93
1.8
93
94
0
306
28
28
21
21
1.99
40271841--40272013
46
3.7
46
80
10
217
28
27
21
21
1.99
40272436--40272495
30
2.0
30
90
0
93
30
25
8
36
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40278447--40278492
24
1.9
24
100
0
92
17
54
10
17
1.70
40279155--40279236
12
6.9
11
80
9
83
17
4
1
76
1.02
40279155--40279216
6
10.5
6
84
3
81
14
4
1
79
0.98
40279152--40279236
17
4.8
17
79
15
84
16
4
1
77
0.99
40282856--40283077
46
4.8
46
75
11
161
21
28
20
29
1.98
40282856--40283077
94
2.4
91
81
11
231
21
28
20
29
1.98
40284675--40284731
28
2.0
30
82
6
73
29
10
8
50
1.67
40292929--40292961
2
17.0
2
93
6
59
51
0
0
48
1.00
40300815--40301243
213
2.0
213
96
0
795
26
13
15
44
1.84
40306422--40306498
29
2.7
29
87
0
118
49
11
9
29
1.70
40307099--40307141
23
1.9
22
86
13
61
51
13
2
32
1.54
40307696--40307725
10
3.0
10
95
0
51
36
0
3
60
1.14
40307650--40307713
29
2.2
29
82
0
74
39
1
6
53
1.36
40307889--40307957
31
2.4
27
77
13
66
50
13
1
34
1.50
40308793--40308839
16
3.0
16
71
3
51
55
0
2
42
1.12
40311381--40311413
5
6.6
5
100
0
66
0
18
0
81
0.68
40318931--40318983
26
2.0
26
88
0
79
41
7
7
43
1.61
40319232--40319261
11
2.8
11
95
5
53
26
0
0
73
0.84
40319298--40319336
10
3.5
11
86
10
53
20
0
0
79
0.73
40321962--40322168
39
5.3
39
92
3
287
29
28
23
18
1.98
40321935--40322167
77
3.0
77
87
5
310
30
29
22
18
1.97
40322187--40322212
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40328324--40328618
39
7.6
40
89
4
383
29
28
23
18
1.98
40328334--40328617
155
1.8
155
86
4
412
29
28
22
19
1.98
40333018--40333508
241
2.0
241
92
1
822
36
12
19
31
1.89
40333711--40334088
48
7.9
48
74
10
228
27
18
29
23
1.98
40333959--40334084
47
2.6
47
90
5
182
25
19
29
25
1.99
40333719--40334087
146
2.6
140
74
10
329
27
18
29
23
1.98
40335079--40335160
28
2.9
28
87
0
110
25
19
34
20
1.96
40339381--40339414
15
2.3
15
90
10
52
47
5
2
44
1.42
40340912--40340944
17
1.9
18
88
11
52
51
27
0
21
1.48
40344900--40344941
22
1.9
22
85
0
57
40
23
2
33
1.68
40348529--40348561
17
1.9
18
88
11
52
51
27
0
21
1.48
40348645--40348672
2
14.0
2
100
0
56
50
0
0
50
1.00
40348980--40349035
27
2.1
27
96
0
103
41
14
7
37
1.73
40359715--40359756
15
2.8
15
88
0
57
19
14
14
52
1.75
40364549--40364579
2
15.5
2
100
0
62
48
0
0
51
1.00
40367940--40368235
151
1.9
152
89
5
465
30
8
14
46
1.73
40369890--40370047
78
2.0
77
87
1
226
37
12
13
36
1.83
40370260--40370413
84
1.8
84
85
2
220
29
12
14
42
1.84
40371650--40371734
42
2.0
42
100
0
170
30
11
25
31
1.92
40375495--40375652
40
4.0
40
79
4
151
26
24
26
22
2.00
40375495--40375682
80
2.3
80
79
12
206
26
23
27
22
2.00
40383554--40383711
40
4.0
40
79
4
151
26
24
26
22
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40383554--40383741
80
2.3
80
79
12
206
26
23
27
22
2.00
40386744--40386928
47
3.9
47
94
0
316
27
11
13
47
1.77
40388187--40388272
31
2.8
31
89
1
138
25
25
16
32
1.96
40388490--40388560
26
2.8
25
91
4
115
26
22
25
25
2.00
40388615--40388660
5
9.4
5
77
13
51
41
19
4
34
1.71
40390443--40390624
45
4.1
45
90
2
262
25
23
24
26
2.00
40397028--40397086
10
5.7
10
80
7
64
15
6
0
77
0.96
40397025--40397086
21
3.0
21
95
0
106
16
6
0
77
0.97
40404212--40404258
16
2.9
17
76
20
55
34
31
8
25
1.86
40405148--40405186
15
2.6
16
92
8
64
46
5
0
48
1.24
40406150--40406237
43
2.0
43
100
0
176
38
18
11
31
1.86
40424971--40425040
28
2.5
28
88
9
99
31
27
14
27
1.95
40427547--40427599
24
2.2
24
96
0
97
54
22
3
18
1.59
40430619--40430662
21
2.1
21
100
0
88
38
22
13
25
1.91
40431062--40431163
50
2.0
50
96
0
186
25
20
16
37
1.93
40433247--40433410
40
4.1
40
76
3
150
24
26
22
26
2.00
40441238--40441378
40
3.5
40
94
1
230
23
29
23
24
1.99
40445371--40445532
43
3.8
42
80
9
168
30
25
15
29
1.96
40448161--40448385
47
4.8
49
72
16
172
26
19
29
24
1.98
40448161--40448385
94
2.4
93
86
3
308
26
19
29
24
1.98
40464486--40464606
61
2.0
63
82
9
151
50
6
18
24
1.70
40474893--40475013
43
2.8
42
81
6
145
24
16
23
34
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40474888--40475044
43
3.7
43
76
5
138
29
15
22
33
1.94
40477786--40477816
2
15.5
2
100
0
62
48
0
0
51
1.00
40484711--40484794
42
2.0
42
97
0
159
30
14
8
46
1.74
40497295--40497328
16
2.1
16
100
0
68
26
14
17
41
1.88
40501384--40501436
28
1.9
27
85
11
72
30
26
22
20
1.98
40504964--40505024
31
2.0
31
90
0
95
49
8
8
34
1.62
40505485--40505511
8
3.4
8
100
0
54
48
0
0
51
1.00
40506676--40506733
29
2.0
30
82
3
73
27
0
6
65
1.18
40506740--40506884
74
2.0
74
81
2
175
45
2
6
45
1.42
40507501--40507553
15
3.5
15
85
10
72
47
0
5
47
1.26
40516840--40516940
28
3.4
27
72
19
78
24
27
20
26
1.99
40516828--40516976
60
2.5
59
82
9
160
26
24
20
28
1.99
40518634--40518677
19
2.3
19
96
0
79
56
2
9
31
1.43
40522662--40522833
46
3.7
46
75
13
181
22
21
27
28
1.99
40534038--40534215
45
3.8
45
77
11
187
29
16
24
29
1.96
40534033--40534215
96
1.9
96
85
2
251
30
16
24
28
1.96
40534033--40534255
96
2.3
96
81
3
234
30
17
22
29
1.97
40534979--40535005
14
1.9
14
100
0
54
7
11
0
81
0.87
40537849--40537924
27
2.8
26
88
7
100
35
18
25
21
1.95
40539247--40539417
93
1.8
93
94
0
306
28
28
21
21
1.98
40539242--40539414
46
3.7
46
77
13
201
29
27
20
21
1.98
40540707--40540793
27
3.2
26
87
6
129
34
25
22
17
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40540899--40540972
26
2.8
26
83
4
76
32
9
22
35
1.87
40542415--40542497
26
3.2
26
94
0
148
37
26
7
28
1.83
40543898--40543937
16
2.5
17
92
8
66
10
22
17
50
1.76
40545396--40545446
19
2.7
19
74
17
52
47
5
5
41
1.52
40548695--40548742
20
2.5
18
77
12
51
39
22
10
27
1.87
40548915--40549020
50
2.2
51
81
13
125
36
16
21
25
1.94
40556515--40556577
19
3.3
19
71
4
63
39
20
7
31
1.81
40556637--40556742
24
4.3
23
76
10
79
32
16
26
24
1.97
40564546--40564574
3
9.7
3
100
0
58
65
0
0
34
0.93
40566226--40566300
35
2.1
35
81
13
84
33
2
1
62
1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378