Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  368  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110229424--110229466
3
14.3
3
95
0
77
32
2
0
65
1.06
110229836--110229877
3
14.3
3
80
5
50
30
4
2
61
1.29
110229840--110229880
14
2.9
15
89
7
59
31
4
2
60
1.30
110233791--110233831
19
2.1
19
86
4
55
26
17
7
48
1.73
110236408--110236467
29
2.0
30
96
3
113
25
13
33
28
1.93
110241734--110241897
65
2.6
65
84
3
217
31
17
10
39
1.85
110242256--110242405
42
3.5
42
72
7
149
34
18
22
24
1.96
110242210--110242484
86
3.2
86
86
3
356
35
20
22
22
1.96
110242212--110242348
44
3.2
44
70
8
136
35
19
21
22
1.96
110242257--110242527
86
3.1
86
83
5
253
34
19
22
22
1.96
110244241--110244274
17
2.0
17
88
11
52
20
8
5
64
1.43
110244402--110244447
3
15.3
3
95
0
83
32
2
0
65
1.05
110244818--110244859
3
14.3
3
80
5
50
30
4
2
61
1.29
110244822--110244862
14
2.9
15
89
7
59
31
4
2
60
1.30
110246972--110247084
52
2.1
52
81
15
126
45
3
7
43
1.50
110247796--110247872
40
1.9
41
81
7
95
32
1
2
63
1.16
110248057--110248086
7
4.4
7
95
4
53
60
0
40
0
0.97
110258531--110258557
1
27.0
1
100
0
54
100
0
0
0
0.00
110259496--110259629
71
1.9
71
90
0
214
30
16
23
29
1.96
110259402--110259787
160
2.4
160
92
1
634
28
17
21
32
1.96
110259655--110259831
70
2.5
70
96
0
318
32
17
21
28
1.96
110259663--110259899
70
3.4
70
88
0
296
29
16
22
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110260165--110260189
13
1.9
13
100
0
50
16
16
4
64
1.44
110260044--110260233
67
2.8
67
80
8
199
28
15
15
40
1.89
110262025--110262081
3
19.0
3
100
0
114
33
0
0
66
0.92
110277837--110277875
16
2.5
15
84
12
51
53
2
0
43
1.14
110278937--110278979
16
2.5
18
88
7
63
65
4
2
27
1.25
110280072--110280201
66
2.0
66
95
0
233
49
18
10
22
1.77
110281865--110281898
17
2.0
17
88
0
50
47
0
0
52
1.00
110295689--110295718
2
15.0
2
92
0
51
53
0
46
0
1.00
110299199--110299299
53
1.9
53
87
0
148
44
9
13
31
1.77
110301464--110301517
26
2.0
28
89
7
85
38
7
16
37
1.77
110306411--110306463
25
2.1
26
86
10
74
39
0
0
60
0.97
110309323--110309388
31
2.1
31
88
0
96
42
9
10
37
1.71
110315033--110315074
21
2.0
21
100
0
84
47
14
9
28
1.75
110315098--110315125
2
14.0
2
100
0
56
50
0
0
50
1.00
110316655--110316732
38
2.1
38
100
0
156
38
16
26
17
1.92
110317189--110317240
25
2.1
25
100
0
104
44
7
3
44
1.51
110320497--110320545
18
2.5
21
78
21
61
63
0
0
36
0.95
110320497--110320555
16
3.5
18
77
9
54
64
0
1
33
1.04
110322715--110322744
13
2.2
14
94
5
53
56
16
0
26
1.40
110328953--110329014
29
2.2
29
97
2
117
27
19
24
29
1.98
110330448--110330477
15
2.0
15
93
0
51
66
3
20
10
1.35
110342762--110342794
17
1.9
17
93
0
57
36
6
0
57
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110347805--110347870
21
3.1
21
82
10
64
42
0
1
56
1.08
110352209--110352243
13
2.6
14
86
9
54
45
0
0
54
0.99
110352209--110352262
28
2.0
27
82
10
65
48
0
1
50
1.11
110363412--110363444
17
1.9
17
93
0
57
15
9
0
75
1.03
110365765--110365834
31
2.3
31
85
5
97
24
28
12
34
1.92
110366736--110366793
18
3.2
17
75
22
55
27
3
1
67
1.17
110366712--110366821
37
3.0
36
79
10
98
36
1
1
60
1.18
110367991--110368044
19
2.9
18
76
23
58
25
1
1
70
1.07
110367991--110368045
27
2.0
28
82
10
69
27
1
1
69
1.09
110368010--110368036
10
2.7
10
100
0
54
25
0
0
74
0.83
110368065--110368115
21
2.4
20
78
12
57
43
1
0
54
1.11
110369075--110369125
25
2.0
26
84
7
68
52
7
7
31
1.59
110369302--110369363
25
2.4
27
78
10
74
58
8
1
32
1.37
110369494--110369528
3
11.7
3
100
0
70
68
0
0
31
0.90
110370012--110370045
14
2.2
16
85
15
54
47
0
52
0
1.00
110370006--110370058
22
2.4
22
81
12
72
47
0
52
0
1.00
110370767--110370805
19
2.1
19
95
0
69
15
2
41
41
1.61
110371440--110371464
13
1.9
13
100
0
50
64
4
16
16
1.44
110371455--110371639
67
2.7
67
94
3
309
40
19
14
25
1.90
110371680--110371858
73
2.5
71
82
9
218
30
20
17
31
1.96
110384214--110384264
25
2.0
26
84
7
68
52
7
7
31
1.59
110384441--110384502
25
2.4
27
78
10
74
58
8
1
32
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110384633--110384669
3
12.3
3
100
0
74
67
0
0
32
0.91
110385150--110385183
14
2.2
16
85
15
54
47
0
52
0
1.00
110385144--110385196
22
2.4
22
81
12
72
47
0
52
0
1.00
110385904--110385942
19
2.1
19
95
0
69
15
2
41
41
1.61
110386577--110386601
13
1.9
13
100
0
50
64
4
16
16
1.44
110386592--110386776
67
2.7
67
94
3
309
40
19
14
25
1.90
110386817--110386995
73
2.5
71
82
9
218
30
20
17
31
1.96
110399373--110399423
25
2.0
26
84
7
68
52
7
7
31
1.59
110399600--110399661
25
2.4
27
78
10
74
58
8
1
32
1.37
110399792--110399826
3
11.7
3
100
0
70
68
0
0
31
0.90
110400310--110400343
14
2.2
16
85
15
54
47
0
52
0
1.00
110400304--110400356
22
2.4
22
81
12
72
47
0
52
0
1.00
110401065--110401103
19
2.1
19
95
0
69
15
2
41
41
1.61
110403881--110404032
72
2.1
72
81
4
173
29
28
15
26
1.96
110404386--110404482
48
2.0
48
95
0
176
35
14
3
47
1.60
110406762--110406933
93
1.8
93
94
0
308
27
29
22
20
1.98
110406754--110406929
46
3.8
46
79
12
216
28
28
21
21
1.98
110409356--110409448
44
2.1
46
80
11
104
39
7
7
45
1.61
110410900--110410975
34
2.2
34
97
0
143
31
0
18
50
1.47
110412455--110412491
18
2.1
18
100
0
74
29
5
37
27
1.79
110428354--110428463
9
11.4
9
69
18
53
60
2
3
32
1.28
110428409--110428455
19
2.4
20
82
3
60
63
2
2
31
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110429125--110429175
18
2.8
19
77
11
54
29
0
5
64
1.17
110429125--110429184
27
2.2
27
84
0
75
31
0
6
61
1.22
110430944--110430984
21
1.9
22
85
14
59
56
4
7
31
1.48
110431562--110431614
21
2.5
22
78
3
63
52
9
5
32
1.57
110433315--110433357
19
2.2
20
87
4
61
41
0
0
58
0.98
110433315--110433357
10
4.4
10
83
13
54
41
0
0
58
0.98
110434133--110434174
22
1.9
22
85
9
59
23
52
9
14
1.71
110434238--110434327
22
3.9
23
75
12
76
10
2
28
58
1.42
110434281--110434327
22
2.1
22
96
0
85
6
0
27
65
1.16
110434653--110434735
3
27.3
3
73
20
59
30
3
1
65
1.17
110434653--110434735
18
4.4
18
79
13
87
30
3
1
65
1.17
110434652--110434739
27
3.3
26
73
12
81
30
3
1
64
1.17
110437544--110437590
19
2.5
19
89
6
69
27
21
8
42
1.81
110440341--110440376
6
6.0
6
96
0
63
47
16
33
2
1.61
110440380--110440440
8
7.6
8
77
14
63
78
19
1
0
0.83
110440379--110440417
9
4.4
9
93
6
71
79
20
0
0
0.73
110440379--110440440
16
3.8
17
79
10
76
79
19
1
0
0.82
110440373--110440441
8
9.0
7
77
22
52
79
18
1
0
0.80
110440377--110440442
9
6.8
9
80
16
60
80
18
1
0
0.79
110441586--110441712
66
1.9
66
96
0
236
33
19
11
35
1.88
110441776--110442456
87
7.8
87
73
11
520
35
22
22
20
1.96
110441776--110442719
43
21.6
44
73
10
582
35
21
21
21
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110441765--110442632
261
3.3
260
91
3
1302
36
21
21
20
1.96
110441764--110442632
132
6.6
131
85
6
1097
36
21
21
20
1.96
110441947--110442735
88
9.0
86
70
11
316
35
21
21
21
1.96
110442737--110442935
68
2.9
68
89
2
294
27
23
22
27
1.99
110442988--110444491
132
11.4
131
88
3
1258
31
19
23
25
1.98
110443178--110444527
176
7.7
176
84
4
1304
31
19
23
25
1.98
110443047--110444493
308
4.7
307
86
4
1559
31
19
23
25
1.98
110444838--110444879
22
1.9
22
85
9
59
23
52
9
14
1.71
110444944--110445052
25
4.7
23
75
18
100
11
1
28
58
1.42
110444926--110445022
22
4.4
22
77
6
88
7
1
30
60
1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378