Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  161  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46946128--46946170
12
3.5
12
93
3
68
46
0
18
34
1.50
46947011--46947055
21
2.1
21
84
8
56
24
24
17
33
1.96
46950747--46950800
26
2.1
26
100
0
108
35
27
7
29
1.84
46951295--46951375
24
3.3
23
75
11
74
25
20
18
34
1.96
46954141--46954183
18
2.5
16
78
14
50
11
23
44
20
1.84
46968138--46968356
24
9.1
24
97
0
384
36
25
17
20
1.94
46976123--46976341
24
9.1
24
97
0
384
36
25
17
20
1.94
46984669--46984887
24
9.1
24
97
0
384
36
25
17
20
1.94
46998739--46998898
44
3.7
42
74
12
130
26
24
21
28
1.99
46998742--46998901
86
1.9
87
84
6
218
26
24
21
27
1.99
47009662--47009782
59
2.1
59
86
7
158
48
12
5
33
1.64
47010310--47010345
12
3.0
12
91
0
54
27
13
50
8
1.71
47011507--47011589
36
2.4
34
80
8
96
36
2
4
56
1.34
47014412--47014441
11
2.7
11
89
0
51
23
26
0
50
1.50
47014710--47014741
2
16.0
2
100
0
64
50
0
0
50
1.00
47015446--47015502
29
2.0
29
100
0
114
33
10
21
35
1.87
47021973--47022065
32
2.9
32
95
0
168
36
18
17
27
1.93
47025626--47025653
3
9.3
3
100
0
56
67
0
0
32
0.91
47025862--47025911
18
2.8
18
71
14
50
32
0
2
66
1.03
47026361--47026398
2
18.5
2
94
5
67
50
2
0
47
1.15
47026447--47026474
2
14.0
2
100
0
56
50
0
0
50
1.00
47028043--47028081
19
2.0
20
90
5
62
20
0
7
71
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47031066--47031105
9
4.4
9
87
6
55
12
7
0
80
0.91
47031052--47031105
9
5.6
10
81
14
53
9
9
0
81
0.88
47031094--47031167
18
4.1
17
71
15
51
16
8
4
71
1.25
47031183--47031274
23
4.1
22
69
19
66
43
0
2
54
1.12
47031204--47031271
22
3.2
21
78
15
68
42
0
2
54
1.15
47031286--47031310
2
12.5
2
100
0
50
48
0
0
52
1.00
47032046--47032144
10
10.4
9
75
10
65
51
3
1
44
1.23
47032036--47032098
29
2.2
29
91
2
101
55
3
0
41
1.16
47032037--47032144
39
2.8
39
74
12
100
52
2
0
43
1.22
47032114--47032203
33
2.7
34
78
14
98
54
1
1
43
1.14
47034512--47034617
28
3.7
28
67
23
76
30
23
15
31
1.95
47034517--47034653
60
2.3
61
80
13
169
29
22
16
31
1.95
47038433--47038481
24
2.0
25
96
4
91
34
8
28
28
1.86
47039402--47039477
30
2.5
30
91
0
116
27
26
22
23
1.99
47042545--47042572
2
14.0
2
100
0
56
50
0
0
50
1.00
47042621--47042689
22
3.2
21
78
13
61
56
2
1
39
1.23
47042704--47042741
15
2.7
15
88
8
53
78
2
2
15
0.97
47042785--47042848
26
2.4
28
81
7
78
45
1
3
50
1.27
47042785--47042850
27
2.5
26
82
5
78
43
1
3
51
1.26
47042996--47043062
23
3.0
23
71
16
59
49
0
0
50
1.00
47043253--47043362
36
3.1
35
74
8
98
56
2
1
39
1.24
47043331--47043418
22
3.9
24
69
19
73
54
2
0
43
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47043403--47043454
18
2.9
18
74
5
52
67
1
3
26
1.18
47043496--47043528
9
3.8
9
92
8
59
81
0
9
9
0.87
47043497--47043527
8
3.8
8
91
8
53
80
0
9
9
0.90
47043941--47044002
30
2.1
30
100
0
124
22
9
9
58
1.59
47047289--47047387
29
3.5
28
83
5
119
28
26
16
29
1.97
47058271--47058614
173
2.0
173
93
2
584
43
7
4
45
1.51
47064487--47064527
2
20.5
2
100
0
82
51
0
0
48
1.00
47066404--47066485
43
1.9
43
87
0
119
30
14
20
34
1.93
47069972--47070031
28
2.1
28
90
6
95
53
11
1
33
1.47
47076878--47076917
21
1.9
21
84
0
53
27
12
35
25
1.92
47084120--47084210
21
4.2
21
80
8
92
20
5
54
18
1.63
47084158--47084210
24
2.2
24
93
0
88
16
3
58
20
1.54
47084249--47084406
78
2.0
78
93
0
271
12
20
32
34
1.91
47084327--47084567
96
2.5
96
89
0
365
13
19
30
36
1.90
47088115--47088157
19
2.4
18
81
11
52
25
30
2
41
1.68
47091521--47091662
40
3.5
40
82
3
117
28
22
26
23
1.99
47091560--47091688
40
3.2
39
84
6
152
24
22
27
25
2.00
47099455--47099621
40
4.2
40
79
6
169
26
22
26
24
2.00
47102596--47102714
58
2.1
55
82
11
143
40
16
16
26
1.90
47103903--47104069
40
4.2
40
78
6
160
25
22
27
24
2.00
47110276--47110306
16
1.9
16
93
0
53
35
22
0
41
1.54
47110273--47110312
20
2.0
20
90
0
62
37
20
0
42
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47110544--47110750
53
3.8
53
81
5
229
22
25
16
35
1.95
47110498--47110751
54
4.9
51
76
12
205
22
24
16
36
1.94
47116987--47117085
28
3.5
29
83
6
114
30
27
15
27
1.96
47123247--47123311
21
2.8
24
80
20
84
27
21
0
50
1.49
47123261--47123313
21
2.6
20
91
5
88
28
20
0
50
1.48
47123556--47123763
55
3.8
53
78
8
215
22
24
16
36
1.94
47126626--47126652
2
13.5
2
100
0
54
48
0
0
51
1.00
47126693--47126732
19
2.1
19
100
0
80
27
0
5
67
1.11
47130626--47130791
43
3.9
43
79
5
167
26
15
26
31
1.96
47135522--47135624
21
5.6
19
72
19
76
64
1
8
25
1.33
47135522--47135583
31
1.9
33
87
6
92
66
1
8
24
1.28
47137427--47137455
6
4.8
6
100
0
58
17
34
17
31
1.93
47140289--47140330
14
2.9
15
78
7
50
40
4
2
52
1.35
47140290--47140333
15
3.0
15
80
6
54
38
4
2
54
1.33
47147598--47147728
29
4.5
29
97
0
244
38
14
23
23
1.92
47152140--47152261
35
3.5
35
85
0
154
20
11
27
40
1.86
47154030--47154056
9
3.0
9
100
0
54
88
0
0
11
0.50
47158470--47158494
8
3.1
8
100
0
50
88
0
0
12
0.53
47161184--47161219
18
2.0
18
88
0
54
55
2
5
36
1.38
47161406--47161478
28
2.6
28
84
2
85
32
6
24
35
1.82
47163614--47163657
21
2.1
21
95
0
79
25
18
20
36
1.95
47165700--47165736
18
2.1
18
100
0
74
10
56
27
5
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47165703--47165743
18
2.3
18
91
0
64
17
56
21
4
1.60
47166794--47166856
28
2.2
28
91
0
99
31
6
30
31
1.83
47174510--47174543
18
1.9
18
88
5
52
55
5
8
29
1.54
47176107--47176158
27
2.0
26
81
11
61
67
0
17
15
1.24
47178929--47179116
41
4.6
41
79
4
200
26
14
24
34
1.94
47178929--47179133
82
2.5
81
83
4
250
26
14
24
34
1.94
47190453--47190673
46
4.8
45
80
11
216
23
30
19
26
1.98
47195470--47195508
20
2.0
20
84
0
51
79
2
2
15
0.95
47197405--47197463
29
2.0
29
83
0
73
33
27
10
28
1.89
47210438--47210580
60
2.3
63
80
10
163
26
26
20
26
1.99
47215598--47215638
20
2.0
20
100
0
82
0
29
9
60
1.28
47215598--47215647
20
2.5
20
90
6
66
2
30
8
60
1.37
47215677--47215732
2
30.0
2
86
13
84
53
0
0
46
1.00
47229468--47229519
19
2.7
20
81
6
61
50
1
7
40
1.42
47230525--47230590
28
2.3
28
84
7
89
37
0
19
42
1.52
47230597--47230653
28
2.0
29
90
6
91
42
0
17
40
1.49
47230527--47230653
28
4.7
28
71
15
83
39
0
21
39
1.53
47232799--47232825
2
13.5
2
100
0
54
51
0
0
48
1.00
47237117--47237191
37
2.0
37
100
0
150
41
16
13
29
1.86
47237938--47239295
488
2.8
488
96
0
2482
36
15
21
27
1.93
47243500--47243539
21
2.0
21
90
5
64
30
2
17
50
1.59
47245324--47245400
38
2.0
38
100
0
154
25
20
25
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47246065--47246121
30
1.9
30
82
13
73
47
3
0
49
1.18
47247507--47247543
18
2.1
18
94
0
65
32
10
8
48
1.67
47248665--47248739
34
2.2
34
79
9
82
46
0
2
50
1.15
47248665--47248729
33
1.9
34
81
9
80
47
0
3
49
1.17
47256790--47256843
16
3.5
16
73
16
60
50
0
5
44
1.25
47256941--47256983
2
22.0
2
95
4
79
48
0
0
51
1.00
47257069--47257096
9
3.1
9
100
0
56
78
0
21
0
0.75
47258129--47258247
51
2.3
53
83
4
152
16
21
21
41
1.91
47263339--47263438
44
2.2
45
85
3
130
30
23
13
34
1.92
47263355--47263443
46
2.0
44
91
4
142
28
25
13
32
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378