genome.fa.s1.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  126  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35321009--35321090	27	3.0	27	84	8	69	28	15	25	30	1.96
35328006--35328060	13	3.9	14	77	15	51	34	1	1	61	1.17
35330638--35330716	39	2.0	39	100	0	158	32	10	10	46	1.71
35337293--35337494	55	3.7	53	73	12	160	34	16	24	24	1.95
35337292--35337492	108	1.8	110	86	4	291	34	16	24	23	1.95
35337725--35337762	20	1.9	20	88	0	58	42	0	18	39	1.50
35340658--35340833	46	3.8	46	79	12	216	20	21	29	28	1.98
35340655--35340826	93	1.8	93	96	0	317	20	21	29	27	1.98
35348238--35348413	46	3.8	46	79	12	216	20	21	29	28	1.98
35348235--35348406	93	1.8	93	96	0	317	20	21	29	27	1.98
35349757--35349874	29	4.1	29	94	1	193	28	32	14	24	1.94
35350085--35350138	16	3.4	16	92	0	90	7	22	24	46	1.77
35350093--35350143	8	6.4	8	83	0	66	7	19	25	47	1.76
35355853--35355985	40	3.3	40	86	0	167	24	27	21	27	1.99
35355875--35356024	40	3.8	40	83	6	171	23	26	22	28	1.99
35361975--35362134	29	5.5	29	82	4	180	25	31	16	26	1.97
35369232--35369413	40	4.6	39	77	8	163	22	27	24	25	2.00
35369230--35369414	79	2.3	81	82	9	220	23	27	24	24	2.00
35387217--35387302	37	2.3	37	97	0	163	23	33	19	23	1.97
35387351--35387570	48	4.6	48	90	0	323	30	27	8	34	1.86
35387548--35387670	47	2.6	47	96	0	219	29	30	8	31	1.88
35387351--35387670	96	3.4	96	78	8	232	30	28	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35387351--35387617	144	1.9	143	82	3	331	29	27	8	34	1.86
35392585--35392682	28	3.5	28	84	4	108	29	16	24	29	1.96
35399811--35399908	28	3.5	28	84	4	108	29	16	24	29	1.96
35404848--35404892	18	2.5	18	82	7	56	22	15	13	48	1.79
35408275--35408484	40	5.3	40	86	2	239	26	27	22	23	2.00
35422878--35423126	40	6.3	40	83	1	238	27	26	21	24	1.99
35422903--35423126	40	5.6	40	86	1	256	27	26	21	23	1.99
35426936--35427251	48	6.6	48	82	3	334	26	17	28	28	1.97
35426933--35427251	144	2.2	143	84	7	396	26	17	27	27	1.98
35429687--35429832	37	3.9	37	96	0	247	26	30	19	23	1.98
35429978--35430162	48	3.8	48	88	4	282	30	25	6	36	1.82
35429978--35430302	47	6.8	48	82	10	253	28	27	9	35	1.87
35429978--35430161	98	1.9	97	89	4	291	30	26	6	36	1.82
35430132--35430372	47	5.1	47	93	0	392	26	29	11	33	1.91
35430225--35430343	22	5.1	22	63	25	66	24	28	13	33	1.93
35430247--35430373	25	5.3	25	64	17	81	28	27	10	33	1.89
35432011--35432141	29	4.5	29	93	0	226	29	14	29	25	1.95
35432011--35432141	58	2.3	58	100	0	262	29	14	29	25	1.95
35432011--35432199	87	2.2	87	80	3	211	26	15	31	25	1.96
35435018--35435053	18	1.9	19	88	5	56	63	0	25	11	1.27
35436394--35436525	29	4.5	29	97	1	237	37	14	23	24	1.92
35436394--35436525	59	2.3	58	95	1	237	37	14	23	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35436364--35436525	88	1.8	89	90	1	263	36	14	24	25	1.93
35441744--35441927	40	4.6	39	75	6	138	26	23	27	22	2.00
35441784--35441972	80	2.4	81	77	4	186	23	24	29	22	1.99
35447034--35447197	71	2.3	71	100	0	328	18	28	17	35	1.94
35447034--35447231	71	2.8	70	91	3	258	20	28	17	33	1.95
35454575--35454738	71	2.3	71	100	0	328	18	28	17	35	1.94
35454575--35454772	71	2.8	70	91	3	258	20	28	17	33	1.95
35457225--35457288	31	2.1	31	96	0	119	23	21	15	39	1.92
35457479--35457597	24	5.0	24	89	5	170	26	22	21	28	1.99
35457479--35457597	47	2.5	48	89	5	170	26	22	21	28	1.99
35457648--35457707	20	3.0	20	95	0	111	33	20	10	36	1.86
35457648--35457702	11	5.4	11	70	16	55	30	20	10	38	1.87
35457750--35457797	25	1.9	25	86	0	69	25	16	25	33	1.96
35463221--35463404	40	4.6	39	76	6	138	28	23	25	22	1.99
35467305--35467368	31	2.1	31	96	0	119	23	21	15	39	1.92
35467560--35467678	24	5.0	24	89	5	170	26	22	21	28	1.99
35467560--35467678	47	2.5	48	89	5	170	26	22	21	28	1.99
35467729--35467788	20	3.0	20	95	0	111	33	20	10	36	1.86
35467729--35467783	11	5.4	11	70	16	55	30	20	10	38	1.87
35467831--35467878	25	1.9	25	86	0	69	25	16	25	33	1.96
35469831--35469878	21	2.2	22	81	3	53	20	4	20	54	1.61
35472408--35472463	27	2.1	27	100	0	112	19	17	14	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35475263--35475431	93	1.8	93	89	0	266	28	28	20	23	1.99
35475255--35475430	46	3.8	46	77	10	178	28	28	19	22	1.98
35477812--35477880	30	2.3	30	85	7	97	59	17	14	8	1.60
35477812--35477880	15	4.7	15	80	8	79	59	17	14	8	1.60
35480093--35480264	93	1.8	93	92	0	290	27	29	21	20	1.98
35480085--35480260	46	3.8	46	78	10	196	28	28	21	21	1.98
35480136--35480279	46	3.1	46	71	14	134	29	29	19	21	1.98
35491334--35491649	46	6.7	48	78	10	201	23	30	19	26	1.98
35491333--35491552	48	4.7	47	78	10	202	24	29	19	26	1.98
35495600--35495721	50	2.6	47	85	5	156	36	13	22	27	1.92
35498031--35498131	28	3.5	28	86	6	114	28	13	27	29	1.95
35498060--35498131	29	2.5	28	91	6	110	29	13	27	29	1.95
35501470--35501519	16	3.1	15	83	11	64	48	30	6	16	1.70
35502864--35502964	28	3.6	28	82	5	123	26	16	28	27	1.97
35502866--35502973	57	1.9	57	88	3	164	27	16	28	26	1.97
35506618--35506668	24	2.1	24	92	0	84	56	19	15	7	1.63
35508667--35508698	3	10.7	3	100	0	64	31	0	0	68	0.90
35517380--35517464	29	2.9	29	87	0	125	27	16	28	28	1.97
35517380--35517488	57	1.9	57	84	1	146	28	16	28	26	1.97
35520383--35520494	43	2.6	42	80	2	125	32	13	24	30	1.93
35527400--35527446	24	1.9	25	82	4	60	68	4	2	25	1.19
35539323--35540110	262	3.0	262	99	0	1531	33	16	13	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35549085--35549155	27	2.6	27	80	4	81	38	26	5	29	1.79
35549139--35549227	27	3.3	27	85	0	133	40	20	6	32	1.78
35549846--35549914	28	2.5	28	95	2	122	43	27	10	18	1.82
35551986--35552091	40	2.6	42	78	3	117	36	17	16	28	1.93
35555723--35555747	2	12.5	2	100	0	50	48	0	0	52	1.00
35557433--35557502	23	3.0	24	85	10	90	24	18	24	32	1.97
35560729--35560808	39	2.1	39	100	0	160	17	33	2	46	1.62
35568918--35568962	23	2.0	23	90	0	72	46	8	17	26	1.78
35580901--35581118	48	4.5	48	77	10	194	18	16	29	35	1.93
35580920--35581127	96	2.2	95	80	11	221	19	16	28	35	1.94
35582812--35582984	46	3.7	46	79	13	210	21	20	28	29	1.98
35582809--35582979	93	1.8	93	94	0	306	21	21	29	28	1.98
35583209--35583246	19	2.0	20	85	15	53	36	0	23	39	1.55
35588502--35588544	21	2.0	22	82	17	54	48	9	4	37	1.56
35588533--35588690	79	2.0	79	92	0	262	55	10	10	22	1.65
35589268--35589303	16	2.2	16	90	0	54	77	8	5	8	1.11
35595011--35595213	40	5.1	40	92	0	334	16	20	28	34	1.94
35603630--35603848	40	5.5	39	86	2	240	24	25	22	27	2.00
35603630--35603854	80	2.8	80	84	2	290	24	25	22	27	2.00
35611677--35611895	40	5.5	39	82	7	208	23	26	23	26	2.00
35611663--35611893	80	2.9	79	82	1	246	23	26	22	26	2.00
35611677--35611895	120	1.8	121	84	3	298	23	26	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35614378--35614602	40	5.6	40	88	0	324	18	20	28	33	1.96
35623324--35623443	47	2.6	47	91	0	195	30	28	16	25	1.97
35627598--35627665	27	2.6	25	79	9	66	38	19	25	17	1.93
35631901--35632071	48	3.6	48	85	3	220	26	29	18	26	1.98
35640284--35640477	47	4.1	47	89	2	291	32	11	28	26	1.91
35640313--35640384	22	3.1	22	64	24	58	33	13	29	23	1.93
35640448--35640631	98	1.9	96	91	4	298	36	6	26	30	1.82
35640447--35640631	48	3.8	48	88	5	291	36	6	26	30	1.82
35640777--35640885	37	2.9	37	95	0	191	22	19	31	26	1.98
35642154--35642465	40	7.8	40	92	0	498	24	22	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378