genome.fa.s1.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  193  of  378  ( 45343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56846661--56846764	48	2.2	48	81	6	113	30	22	29	17	1.96
56850401--56850484	38	2.2	38	89	0	123	20	17	27	34	1.95
56850456--56850673	43	5.1	43	88	2	289	14	22	31	31	1.94
56851003--56851088	45	1.9	45	87	0	127	25	20	25	27	1.99
56856247--56856285	16	2.4	16	91	0	60	48	23	20	7	1.75
56856508--56856646	29	4.8	29	81	4	131	29	15	30	24	1.95
56863485--56863597	27	4.2	26	86	8	145	36	23	23	16	1.94
56863485--56863597	55	2.1	54	88	5	165	36	23	23	16	1.94
56870191--56870303	27	4.1	27	80	10	115	38	21	22	17	1.93
56870198--56870302	55	1.9	54	84	5	140	39	20	21	19	1.93
56870723--56870754	8	4.0	8	95	0	55	9	25	25	40	1.85
56873637--56873788	40	3.8	40	88	5	193	24	23	28	23	2.00
56878354--56878516	39	4.2	39	90	0	254	23	20	32	23	1.98
56878371--56878552	39	4.6	40	86	0	154	22	22	32	22	1.98
56886269--56886431	39	4.2	39	91	0	263	22	20	33	23	1.97
56886269--56886462	39	4.9	39	89	0	253	22	21	32	23	1.98
56892140--56892245	27	3.9	27	81	10	117	37	21	22	17	1.94
56895917--56896050	56	2.4	56	89	0	205	31	24	15	28	1.96
56900000--56900045	20	2.3	20	85	7	58	76	4	6	13	1.14
56900020--56900103	14	6.1	13	69	15	53	72	2	3	21	1.11
56900021--56900103	27	3.0	26	72	11	69	72	2	3	21	1.12
56900074--56900106	16	2.1	16	94	5	59	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56904203--56904259	30	1.9	30	89	7	89	15	29	36	17	1.91
56906449--56906493	22	2.0	22	100	0	90	55	13	8	22	1.65
56913142--56913216	10	7.9	9	72	11	51	76	4	2	17	1.06
56913186--56913223	7	5.7	7	84	12	53	76	0	0	23	0.79
56913282--56913370	14	6.2	13	70	15	52	71	1	5	21	1.12
56914108--56914241	60	2.2	63	80	9	161	29	26	17	26	1.98
56923499--56923663	42	3.9	41	74	7	134	30	13	25	30	1.94
56932068--56932247	40	4.5	40	85	5	134	25	27	21	25	1.99
56941311--56941438	39	3.3	39	83	1	166	22	24	20	32	1.98
56943964--56944230	40	6.7	40	91	2	439	25	26	21	25	2.00
56947650--56947800	40	3.8	40	77	13	134	27	23	26	22	2.00
56947687--56947814	40	3.2	40	76	4	134	25	24	26	24	2.00
56950919--56950991	35	2.1	35	94	0	128	32	28	10	27	1.91
56956946--56957006	30	2.0	30	83	0	77	39	6	24	29	1.80
56960274--56960316	17	2.6	17	81	3	52	41	20	4	32	1.73
56965305--56965435	47	2.8	47	86	0	181	34	29	14	22	1.93
56969896--56969996	29	3.5	29	90	0	148	27	15	32	23	1.95
56972846--56973029	40	4.6	39	75	6	138	26	23	27	22	2.00
56972886--56973074	80	2.4	81	77	4	186	23	24	29	22	1.99
56980867--56981050	40	4.6	39	75	6	138	26	23	27	22	2.00
56980907--56981095	80	2.4	81	77	4	186	23	24	29	22	1.99
56983011--56983188	40	4.5	40	92	3	272	24	23	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56985818--56985877	24	2.5	24	100	0	120	36	26	16	20	1.93
56994066--56994140	29	2.6	29	89	4	107	26	16	32	25	1.96
56997914--56998016	29	3.6	28	80	5	116	29	33	16	21	1.95
57002599--57002701	29	3.6	28	80	5	116	29	33	16	21	1.95
57007295--57007397	29	3.6	28	80	5	116	29	33	16	21	1.95
57011989--57012091	29	3.6	28	80	5	116	29	33	16	21	1.95
57014497--57014631	40	3.4	39	82	5	146	25	20	26	27	1.99
57025402--57025477	31	2.5	31	93	0	125	32	19	5	42	1.74
57040440--57040540	28	3.5	28	86	6	114	29	13	26	29	1.94
57049657--57049841	26	7.1	27	82	8	204	28	24	7	39	1.81
57049657--57049856	78	2.6	78	84	6	253	29	24	7	39	1.81
57049657--57049869	26	8.2	27	81	7	194	28	24	7	39	1.82
57049872--57050139	27	9.9	27	77	6	202	38	19	10	31	1.86
57049871--57050055	81	2.3	80	85	9	268	39	20	10	30	1.85
57050167--57050229	27	2.3	27	83	5	83	36	20	22	20	1.95
57051023--57051092	25	2.8	25	93	0	113	27	25	22	24	2.00
57051022--57051117	25	3.9	24	81	9	95	28	23	22	25	2.00
57051023--57051117	50	1.9	50	80	8	113	28	24	23	24	2.00
57051311--57051393	31	2.7	31	96	3	152	28	16	26	27	1.97
57051430--57051492	33	1.9	33	83	0	81	23	19	28	28	1.98
57052189--57052213	12	2.1	12	100	0	50	0	8	0	92	0.40
57053645--57053824	52	3.4	52	87	6	240	30	24	6	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57053633--57053824	78	2.4	79	85	6	257	29	25	7	38	1.82
57053645--57053820	26	6.8	26	84	6	198	30	25	6	38	1.80
57053816--57054005	27	7.1	26	77	8	161	38	21	9	30	1.85
57053823--57053978	54	2.9	53	85	5	199	39	19	8	31	1.83
57053823--57053980	81	2.0	80	91	1	253	39	20	8	31	1.83
57054017--57054069	28	1.9	27	88	3	79	39	13	13	33	1.83
57054130--57054213	27	3.1	27	93	3	134	30	22	26	20	1.98
57055017--57055084	24	2.8	24	90	2	100	27	23	23	25	2.00
57055041--57055111	24	3.0	24	78	15	67	29	21	22	26	1.99
57056506--57056561	20	2.9	21	87	10	75	41	8	17	32	1.81
57056611--57056700	26	3.6	26	89	5	141	27	16	24	31	1.97
57056611--57056719	51	2.2	49	87	9	150	29	15	23	31	1.95
57056611--57056719	26	4.3	26	86	10	140	29	15	23	31	1.95
57059518--57059752	39	6.1	39	93	2	411	20	25	30	23	1.99
57059518--57059752	115	2.0	117	94	1	411	20	25	30	23	1.99
57067574--57067697	39	3.2	39	91	1	194	26	33	18	21	1.97
57071708--57071754	20	2.3	20	85	7	60	40	12	19	27	1.88
57071804--57071923	26	4.7	26	83	2	154	26	21	24	27	1.99
57071804--57071939	52	2.7	52	85	5	172	28	19	23	27	1.99
57073514--57073624	58	1.9	58	85	1	152	27	30	14	27	1.95
57073517--57073624	29	3.8	29	82	6	121	27	29	14	27	1.95
57073847--57073883	16	2.3	16	90	0	56	8	21	21	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57074930--57074961	16	2.0	16	93	0	55	9	6	34	50	1.60
57096685--57096725	19	2.1	20	90	4	66	60	0	2	36	1.10
57100261--57100308	24	2.0	24	91	0	78	22	31	18	27	1.97
57105350--57105383	10	3.4	10	91	0	50	26	29	29	14	1.95
57106567--57106613	20	2.4	18	80	19	51	25	0	8	65	1.20
57112087--57112238	67	2.2	68	82	10	195	31	16	30	21	1.95
57121994--57122023	15	2.0	15	100	0	60	46	13	13	26	1.80
57128971--57129132	67	2.5	66	81	6	195	28	16	32	23	1.96
57132992--57133201	40	5.2	40	90	1	312	27	27	22	22	1.99
57132978--57133201	81	2.8	81	91	2	355	27	26	21	23	1.99
57135844--57135908	27	2.4	27	92	0	103	50	7	13	27	1.69
57141121--57141307	43	4.4	43	92	3	290	12	23	34	29	1.92
57141131--57141293	85	1.9	86	94	1	292	11	24	33	30	1.91
57141624--57141731	45	2.5	42	85	8	128	23	24	26	25	2.00
57142863--57142966	48	2.2	48	81	6	113	30	22	29	17	1.96
57146610--57146787	43	4.1	43	91	0	266	13	24	32	29	1.93
57151961--57152145	40	4.7	40	82	6	207	22	22	27	27	1.99
57151962--57152178	79	2.7	78	76	12	210	24	22	27	26	2.00
57156256--57156488	40	5.8	40	83	4	211	23	26	22	27	1.99
57165468--57165618	40	3.8	40	80	6	164	26	23	27	23	2.00
57173368--57173509	40	3.5	40	83	1	124	27	23	26	21	1.99
57173407--57173519	40	2.8	39	86	5	145	23	23	28	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57177082--57177110	14	2.1	14	100	0	58	41	6	24	27	1.80
57190699--57190911	43	5.0	43	86	5	270	29	28	16	25	1.97
57190699--57190911	86	2.5	86	87	1	302	29	28	16	25	1.97
57197140--57197227	29	3.1	29	88	1	133	28	13	27	30	1.94
57201426--57201474	17	2.8	18	74	22	50	24	18	22	34	1.96
57202332--57202462	40	3.3	40	79	2	147	25	22	28	24	1.99
57203922--57204138	43	5.0	43	85	4	285	30	28	16	24	1.96
57209226--57209271	15	3.1	15	90	0	74	15	15	17	52	1.76
57209228--57209291	15	4.3	15	76	7	58	14	18	15	51	1.76
57209228--57209292	30	2.2	30	83	10	80	13	18	15	52	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378