Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 113035596 
Parameters: 2 7 7 80 10 50 1000
Length:  113035596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378   

This is table  348  of  378  ( 45343 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104792295--104792463
13
13.1
13
64
20
52
56
3
4
36
1.36
104792294--104792429
13
10.1
14
66
20
67
58
2
4
34
1.33
104792300--104792444
65
2.2
65
81
7
168
56
2
4
35
1.35
104792327--104792416
40
2.3
37
83
11
101
57
2
4
35
1.31
104792327--104792416
38
2.3
36
83
11
99
57
2
4
35
1.31
104792397--104792459
24
2.6
24
83
11
76
52
4
4
38
1.44
104792509--104792562
23
2.5
20
80
13
54
55
7
1
35
1.39
104792614--104792660
25
1.9
24
82
4
58
44
2
14
38
1.58
104792763--104792841
3
26.7
3
70
12
56
60
5
3
30
1.36
104792794--104792829
15
2.4
15
95
0
63
63
5
2
27
1.30
104797517--104797568
19
2.9
18
77
5
52
28
1
3
65
1.21
104802954--104803017
27
2.4
28
86
5
80
42
12
12
32
1.80
104806128--104806233
50
2.1
51
98
1
205
60
17
3
17
1.51
104806135--104806214
24
3.2
24
67
19
74
60
17
5
17
1.54
104809159--104809205
25
2.0
23
83
8
58
8
14
4
72
1.24
104809884--104809918
10
3.4
10
92
4
52
54
2
0
42
1.15
104814965--104814990
6
4.3
6
100
0
52
84
0
0
15
0.62
104818167--104818234
34
2.0
34
100
0
136
41
17
2
38
1.65
104821783--104821944
40
4.1
39
81
4
164
25
27
22
24
2.00
104825599--104825671
15
5.0
14
75
15
67
27
9
0
63
1.26
104825627--104825673
18
2.5
20
77
19
57
27
10
0
61
1.29
104825807--104825855
25
2.0
25
83
0
62
32
6
2
59
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104833900--104833939
21
1.9
21
94
0
71
42
10
12
35
1.76
104834417--104834825
44
9.2
44
68
15
218
32
20
24
22
1.98
104834387--104834908
88
5.9
88
85
4
627
32
20
23
23
1.98
104834387--104834908
178
2.9
178
87
1
701
32
20
23
23
1.98
104834630--104834874
44
5.5
44
64
16
130
33
20
22
23
1.97
104837081--104837274
105
1.9
101
82
6
246
28
24
14
32
1.95
104838223--104838295
36
2.0
36
97
0
137
41
13
15
30
1.85
104840903--104840932
2
15.0
2
100
0
60
50
0
0
50
1.00
104847665--104847727
27
2.3
27
83
0
81
25
38
20
15
1.92
104852617--104852642
12
2.2
12
100
0
52
46
0
7
46
1.31
104856995--104857040
22
2.1
22
87
0
65
0
52
0
47
1.00
104857001--104857047
22
2.1
22
92
0
76
0
42
0
57
0.98
104857512--104857578
3
22.0
3
93
3
116
32
0
0
67
0.91
104870263--104870684
70
5.9
71
82
4
409
28
16
22
33
1.95
104871053--104871088
13
2.8
13
86
0
54
19
8
2
69
1.27
104871195--104871219
13
1.9
13
100
0
50
16
16
4
64
1.44
104871087--104871263
67
2.6
68
80
8
193
27
16
18
37
1.92
104872180--104872211
15
2.3
15
89
10
50
81
3
0
15
0.82
104872799--104872876
3
26.0
3
100
0
156
33
0
0
66
0.92
104875767--104875795
10
2.9
10
100
0
58
41
17
10
31
1.83
104876708--104876752
22
2.0
22
86
8
63
51
4
0
44
1.21
104876854--104876911
21
2.7
22
78
19
61
32
3
0
63
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104886421--104886463
22
2.0
22
85
0
59
60
18
13
6
1.55
104893206--104893561
179
2.0
176
91
1
577
44
18
14
22
1.86
104897093--104897151
30
1.9
31
86
3
84
47
1
22
28
1.61
104897351--104897396
15
3.1
16
81
12
62
39
0
0
60
0.97
104897351--104897426
31
2.6
30
82
12
86
38
0
1
60
1.05
104900707--104900742
15
2.5
15
86
4
56
66
0
0
33
0.92
104912099--104912176
39
2.0
40
84
2
104
64
8
1
25
1.31
104912181--104912234
29
1.9
27
85
7
72
64
0
1
33
1.04
104912533--104912581
19
2.7
18
87
12
73
73
2
0
24
0.94
104912561--104912610
26
1.9
26
83
0
64
66
4
2
28
1.21
104912567--104912755
17
10.3
18
68
16
59
57
3
2
37
1.26
104912660--104912756
27
3.5
26
81
8
113
59
3
2
35
1.24
104912732--104912804
8
8.8
8
70
19
51
64
1
2
31
1.16
104912892--104913044
34
4.5
34
77
4
166
29
15
19
35
1.92
104912946--104913036
33
2.7
33
81
8
112
30
18
14
36
1.91
104913658--104913701
22
2.0
22
86
0
61
52
0
0
47
1.00
104913724--104913760
16
2.3
16
86
13
58
59
0
0
40
0.97
104914257--104914295
14
2.8
14
88
0
51
35
15
7
41
1.76
104915135--104915232
16
6.1
16
67
17
51
63
2
2
32
1.17
104915237--104915297
27
2.3
27
91
0
104
68
1
6
22
1.21
104915230--104915267
19
2.0
20
85
10
53
73
0
5
21
1.02
104918920--104918969
24
2.1
24
88
0
73
32
0
0
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104918918--104918973
20
3.0
20
87
7
73
32
0
0
67
0.91
104918916--104918973
18
3.2
18
81
13
57
31
0
0
68
0.89
104927835--104927890
29
2.1
28
84
15
75
33
7
8
50
1.61
104927846--104927923
37
2.1
37
97
0
147
35
7
8
47
1.64
104928094--104928137
21
2.1
21
100
0
88
56
13
25
4
1.56
104928236--104928273
2
19.5
2
94
5
69
50
0
0
50
1.00
104929707--104929736
2
15.0
2
100
0
60
50
0
0
50
1.00
104929865--104929919
19
3.0
18
84
10
67
36
0
3
60
1.15
104929845--104929925
37
2.2
38
82
10
96
37
1
2
59
1.19
104929844--104929919
17
4.2
18
75
17
68
36
1
2
59
1.20
104937560--104937620
19
3.1
19
81
9
70
50
0
1
47
1.10
104940771--104940805
2
17.5
2
87
0
52
0
45
2
51
1.16
104941222--104941558
166
2.0
166
97
0
638
35
16
23
25
1.95
104941892--104941943
28
1.9
27
84
7
70
42
5
17
34
1.73
104943001--104943085
42
2.0
42
86
0
116
25
15
10
48
1.77
104945238--104945278
11
3.7
11
80
0
55
24
14
4
56
1.58
104945427--104945466
18
2.2
18
86
8
55
20
0
12
67
1.22
104945468--104945501
11
3.0
12
87
12
54
67
0
0
32
0.91
104947987--104948218
132
1.8
127
80
8
281
38
17
17
26
1.92
104948347--104948400
23
2.5
23
82
8
60
61
7
0
31
1.24
104948481--104948534
24
2.2
26
83
9
69
70
0
5
24
1.08
104948599--104948724
18
7.4
17
69
18
68
66
0
6
26
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104948609--104948654
15
2.9
15
90
6
65
67
0
6
26
1.15
104948624--104948714
14
6.4
13
73
23
60
64
0
7
27
1.20
104948619--104948740
29
4.2
30
69
16
76
65
0
6
27
1.22
104948609--104948731
14
8.5
15
66
20
50
67
0
5
26
1.13
104949871--104950413
88
6.1
88
65
16
251
28
21
18
30
1.97
104949696--104950326
178
3.5
178
89
1
908
28
22
18
29
1.98
104950003--104950276
89
3.1
89
65
15
222
28
21
17
32
1.96
104950206--104950365
44
3.6
44
68
14
105
26
20
18
33
1.96
104950047--104950414
88
4.2
88
70
10
282
29
20
19
31
1.97
104950047--104950590
265
2.0
266
87
1
779
29
22
18
30
1.97
104950225--104950590
88
4.1
88
68
14
232
28
22
18
29
1.98
104949869--104950766
443
2.0
443
86
3
1189
28
22
18
30
1.98
104950313--104950822
177
2.9
178
84
1
659
28
22
18
30
1.97
104957154--104957207
23
2.5
23
82
8
60
61
7
0
31
1.24
104957323--104957351
4
7.2
4
100
0
58
75
0
0
24
0.80
104957424--104957469
15
2.9
15
90
6
65
67
0
6
26
1.15
104957389--104957487
29
3.4
28
72
22
71
63
0
8
28
1.22
104957449--104957489
14
2.8
15
75
20
50
60
0
9
29
1.28
104957424--104957484
15
4.1
14
80
16
54
67
0
6
26
1.15
104957436--104957498
29
2.2
28
81
13
74
61
1
9
26
1.36
104957418--104957538
23
5.2
24
70
18
87
65
2
8
23
1.33
104966485--104966556
16
4.4
16
68
10
56
45
1
1
51
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104973944--104973993
2
25.0
2
100
0
100
50
0
50
0
1.00
104975210--104975248
15
2.6
15
79
0
51
2
53
0
43
1.14
104976358--104976412
18
3.0
19
77
17
62
63
5
30
0
1.17
104976370--104976409
19
2.2
17
86
8
53
65
5
30
0
1.14
104976832--104976900
18
3.8
18
70
14
52
52
0
5
42
1.25
104977430--104977491
30
2.0
31
87
3
90
38
0
38
22
1.54
104977540--104977595
9
6.2
9
91
0
94
32
8
12
46
1.73
104977925--104978086
80
2.0
80
97
0
306
39
13
11
35
1.80
104980581--104980614
15
2.3
15
89
0
50
17
11
0
70
1.16
104993781--104993889
28
3.9
28
80
0
119
33
21
21
24
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   357   358   359   360   361   362   363   364   365   366   367   368   
          369   370   371   372   373   374   375   376   377   378